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1.
Nat Biotechnol ; 2024 Feb 06.
Article in English | MEDLINE | ID: mdl-38321114

ABSTRACT

Using transient inhibition of DNA mismatch repair during a permissive stage of development, we demonstrate highly efficient prime editing of mouse embryos with few unwanted, local byproducts (average 58% precise edit frequency, 0.5% on-target error frequency across 13 substitution edits at 8 sites), enabling same-generation phenotyping of founders. Whole-genome sequencing reveals that mismatch repair inhibition increases off-target indels at low-complexity regions in the genome without any obvious phenotype in mice.

2.
Biophys J ; 120(19): 4149-4161, 2021 10 05.
Article in English | MEDLINE | ID: mdl-33964274

ABSTRACT

The last decade has seen a major expansion in development of live biosensors, the tools needed to genetically encode them into model organisms, and the microscopic techniques used to visualize them. When combined, these offer us powerful tools with which to make fundamental discoveries about complex biological processes. In this review, we summarize the availability of biosensors to visualize an essential cellular process, the cell cycle, and the techniques for single-cell tracking and quantification of these reporters. We also highlight studies investigating the connection of cellular behavior to the cell cycle, particularly through live imaging, and anticipate exciting discoveries with the combination of these technologies in developmental contexts.


Subject(s)
Biosensing Techniques , Cell Cycle , Cell Tracking
3.
Development ; 145(23)2018 12 05.
Article in English | MEDLINE | ID: mdl-30389852

ABSTRACT

Adult stem cell niche boundaries must be precisely maintained to facilitate the segregation of stem cell and daughter cell fates. However, the mechanisms that govern this process in epithelial tissues are not fully understood. In this study, we investigated the relationship between two signals, Wnt and EGFR, that are necessary for self-renewal of the epithelial follicle stem cells (FSCs) in the Drosophila ovary, but must be downregulated in cells that have exited the niche to allow for differentiation. We found that Wingless produced by inner germarial sheath (IGS) cells acts over a short distance to activate Wnt signaling in FSCs, and that movement across the FSC niche boundary is limited. In addition, we show that Wnt signaling functions genetically upstream of EGFR signaling by activating the expression of the EGFR ligand, Spitz, and that constitutive activation of EGFR partially rescues the self-renewal defect caused by loss of Wnt signaling. Collectively, our findings support a model in which the Wnt and EGFR pathways operate in a signaling hierarchy to promote FSC self-renewal.


Subject(s)
Cell Self Renewal , Drosophila Proteins/metabolism , Drosophila melanogaster/cytology , Drosophila melanogaster/metabolism , ErbB Receptors/metabolism , Ovarian Follicle/cytology , Receptors, Invertebrate Peptide/metabolism , Stem Cells/cytology , Wnt1 Protein/metabolism , Animals , Drosophila Proteins/genetics , Epidermal Growth Factor/genetics , Epidermal Growth Factor/metabolism , Extracellular Signal-Regulated MAP Kinases/metabolism , Female , Ligands , Membrane Proteins/genetics , Membrane Proteins/metabolism , Phosphorylation , Receptors, Notch/metabolism , Signal Transduction , Stem Cell Niche , Stem Cells/metabolism , Transcription, Genetic
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