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1.
FEBS J ; 284(24): 4343-4357, 2017 12.
Article in English | MEDLINE | ID: mdl-29083543

ABSTRACT

Clostridium difficile is a burden to healthcare systems around the world, causing tens of thousands of deaths annually. The S-layer of the bacterium, a layer of protein found of the surface of cells, has received a significant amount of attention over the past two decades as a potential target to combat the growing threat presented by C. difficile infections. The S-layer contains a wide range of proteins, each of which possesses three cell wall-binding domains, while many also possess a "functional" region. Here, we present the high resolution structure of the functional region of one such protein, Cwp19 along with preliminary functional characterisation of the predicted glycoside hydrolase. Cwp19 has a TIM barrel fold and appears to possess a high degree of substrate selectivity. The protein also exhibits peptidoglycan hydrolase activity, an order of magnitude slower than that of lysozyme and is the first member of glycoside hydrolase-like family 10 to be characterised. This research goes some way to understanding the role of Cwp19 in the S-layer of C. difficile. DATABASE: Structural data are available in the PDB under the accession numbers 5OQ2 and 5OQ3.


Subject(s)
Bacterial Proteins/chemistry , Clostridioides difficile/enzymology , Glycoside Hydrolases/chemistry , Membrane Glycoproteins/chemistry , Bacterial Proteins/isolation & purification , Bacterial Proteins/physiology , Catalytic Domain , Crystallography, X-Ray , Glycoside Hydrolases/isolation & purification , Glycoside Hydrolases/physiology , Hydrolysis , Membrane Glycoproteins/isolation & purification , Membrane Glycoproteins/physiology , Models, Molecular , Peptidoglycan/metabolism , Protein Conformation , Protein Domains
2.
FEBS J ; 284(17): 2886-2898, 2017 09.
Article in English | MEDLINE | ID: mdl-28677344

ABSTRACT

Colonization of the gut by Clostridium difficile requires the adhesion of the bacterium to host cells. A range of cell surface located factors have been linked to adhesion including the S-layer protein LMW SLP and the related protein Cwp66. As well as these proteins, the S-layer of C. difficile may contain many others. One such protein is Cwp2. Here, we demonstrate the production of a C. difficile strain 630 cwp2 knockout mutant and assess the effect on the bacterium. The mutant results in increased TcdA (toxin A) release and impaired cellular adherence in vitro. We also present the extended three domain structure of the 'functional' region of Cwp2, consisting of residues 29-318 at 1.9 Å, which is compared to that of LMW SLP and Cwp8. The adhesive properties of Cwp2 and LMW SLP, which are likely to be shared by Cwp8, are predicted to be mediated by the variable loop regions in domain 2. DATABASES: Structural data are available in the PDB under the accession number 5NJL.


Subject(s)
Adhesins, Bacterial/chemistry , Clostridioides difficile/physiology , Adhesins, Bacterial/genetics , Adhesins, Bacterial/metabolism , Bacterial Adhesion , Base Sequence , Caco-2 Cells , Crystallography, X-Ray , Gene Knockout Techniques , Humans , Models, Molecular , Protein Conformation, alpha-Helical , Protein Domains , Sequence Deletion
3.
Acta Crystallogr D Biol Crystallogr ; 70(Pt 7): 1983-93, 2014 Jul.
Article in English | MEDLINE | ID: mdl-25004975

ABSTRACT

Clostridium difficile is a major problem as an aetiological agent for antibiotic-associated diarrhoea. The mechanism by which the bacterium colonizes the gut during infection is poorly understood, but undoubtedly involves a myriad of components present on the bacterial surface. The mechanism of C. difficile surface-layer (S-layer) biogenesis is also largely unknown but involves the post-translational cleavage of a single polypeptide (surface-layer protein A; SlpA) into low- and high-molecular-weight subunits by Cwp84, a surface-located cysteine protease. Here, the first crystal structure of the surface protein Cwp84 is described at 1.4 Šresolution and the key structural components are identified. The truncated Cwp84 active-site mutant (amino-acid residues 33-497; C116A) exhibits three regions: a cleavable propeptide and a cysteine protease domain which exhibits a cathepsin L-like fold followed by a newly identified putative carbohydrate-binding domain with a bound calcium ion, which is referred to here as a lectin-like domain. This study thus provides the first structural insights into Cwp84 and a strong base to elucidate its role in the C. difficile S-layer maturation mechanism.


Subject(s)
Clostridioides difficile/chemistry , Cysteine Endopeptidases/chemistry , Cysteine Proteases/chemistry , Lectins/chemistry , Amino Acid Sequence , DNA Primers , Molecular Sequence Data , Protein Conformation , Sequence Homology, Amino Acid
4.
Article in English | MEDLINE | ID: mdl-21795789

ABSTRACT

Cwp19 is a putatively surface-located protein from Clostridium difficile. A recombinant N-terminal protein (residues 27-401) lacking the signal peptide and the C-terminal cell-wall-binding repeats (PFam04122) was crystallized using the sitting-drop vapour-diffusion method and diffracted to 2 Šresolution. The crystal appeared to belong to the primitive monoclinic space group P2(1), with unit-cell parameters a=109.1, b=61.2, c=109.2 Å, ß=111.85°, and is estimated to contain two molecules of Cwp19 per asymmetric unit.


Subject(s)
Bacterial Proteins/chemistry , Clostridioides difficile/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/isolation & purification , Cell Wall/chemistry , Crystallization , Crystallography, X-Ray , Gene Expression
5.
J Biol Chem ; 284(50): 34666-73, 2009 Dec 11.
Article in English | MEDLINE | ID: mdl-19808679

ABSTRACT

Clostridium difficile is a major and growing problem as a hospital-associated infection that can cause severe, recurrent diarrhea. The mechanism by which the bacterium colonizes the gut during infection is poorly understood but undoubtedly involves protein components within the surface layer (S-layer), which play a role in adhesion. In C. difficile, the S-layer is composed of two principal components, the high and low molecular weight S-layer proteins, which are formed from the post-translational cleavage of a single precursor, SlpA. In the present study, we demonstrate that a recently characterized cysteine protease, Cwp84 plays a role in maturation of SlpA. Using a gene knock-out approach, we show that inactivation of the Cwp84 gene in C. difficile 630DeltaErm results in a bacterial phenotype in which only immature, single chain SlpA comprises the S-layer. The Cwp84 knock-out mutants (CDDeltaCwp84) displayed significantly different colony morphology compared with the wild-type strain and grew more slowly in liquid medium. SlpA extracted from CDDeltaCwp84 was readily cleaved into its mature subunits by trypsin treatment. Addition of trypsin to the growth medium also cleaved SlpA on CDDeltaCwp84 and increased the growth rate of the bacterium in a dose-dependent manner. Using the hamster model for C. difficile infection, CDDeltaCwp84 was found to be competent at causing disease with a similar pathology to the wild-type strain. The data show that whereas Cwp84 plays a role in the cleavage of SlpA, it is not an essential virulence factor and that bacteria expressing immature SlpA are able to cause disease.


Subject(s)
Bacterial Proteins/metabolism , Clostridioides difficile/cytology , Clostridioides difficile/physiology , Cysteine Endopeptidases/metabolism , Amino Acid Sequence , Animals , Bacterial Adhesion/physiology , Bacterial Proteins/genetics , Clostridioides difficile/pathogenicity , Cricetinae , Cricetulus , Cysteine Endopeptidases/genetics , Enterocolitis, Pseudomembranous/metabolism , Gene Knockout Techniques , Humans , Mesocricetus , Molecular Sequence Data , Survival Rate
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