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1.
Phys Chem Chem Phys ; 26(21): 15255-15267, 2024 May 29.
Article in English | MEDLINE | ID: mdl-38751356

ABSTRACT

Photoinduced linkage isomers (PLI) of the NO ligand in transition-metal nitrosyl compounds can be identified by vibrational spectroscopy due to the large shifts of the (NO) stretching vibration. We present a detailed experimental and theoretical study of the prototypical compound K2[RuCl5NO], where (NO) shifts by ≈150 cm-1 when going from the N-bound (κN) ground state (GS) to the oxygen-bound (κO) metastable linkage isomer MS1, and by ≈360 cm-1 when going to the side-on (κ2N,O) metastable linkage isomer MS2. We show that the experimentally observed N-O stretching modes of the GS, MS1, and MS2 exhibit strong coupling with the Ru-N and Ru-O stretching modes, which can be decoupled using the local mode vibrational theory formalism. From the resulting decoupled pure two-atomic harmonic oscillators the local force constants are determined, which all follow the same quadratic behavior on the wavenumber. A Bader charge analysis shows that the total charge on the NO ligand is not correlated to the observed frequency shift of (NO).

2.
Angew Chem Int Ed Engl ; 61(42): e202210671, 2022 Oct 17.
Article in English | MEDLINE | ID: mdl-35983847

ABSTRACT

The {Ru(NO)2 }10 dinitrosylruthenium complex [Ru(NO)2 (PPh3 )2 ] (1) shows photo-induced linkage isomerism (PLI) of a special kind: the two NO ligands switch, on photo-excitation, synchronously from the ground state (GS) with two almost linear RuNO functions to a metastable state (MS) which persists up to 230 K and can be populated to ≈50 %. The MS was experimentally characterised by photo-crystallography, IR spectroscopy and DS-calorimetry as a double-bent variant of the double-linear GS. The experimental results are confirmed by computation which unravels the GS/MS transition as a disrotatory synchronous 50° turn of the two nitrosyl ligands. Although 1 shows the usual redshift of the N-O stretch on bending the MNO unit, there is no increased charge transfer from Ru to NO along the GS-to-MS path. In terms of the effective-oxidation-state (EOS) method, both isomers of 1 and the transition state are Ru-II (NO+ )2 species.


Subject(s)
Ruthenium , Crystallography, X-Ray , Isomerism , Ligands , Nitric Oxide/chemistry , Ruthenium/chemistry
3.
Inorg Chem ; 60(21): 15980-15996, 2021 Nov 01.
Article in English | MEDLINE | ID: mdl-34612642

ABSTRACT

Among the isoelectronic ligands CN-, CO, and NO+, an oblique bonding to the metal is well-established for the nitrosyl ligand, with M-N-O angles down to ≈120°. In the last decades, the nitrosyl community got into the habit of addressing a bent-bonded nitrosyl ligand as 1NO-. Thus, because various redox forms of a nitrosyl ligand seem to exist, the ligand is considered to be "noninnocent" because of the obvious ambiguity of an oxidation state (OS) assignment of the ligand and metal. Among the bent-bonded species, the low-spin {CoNO}8 class is prototypic. From this class, some 20 new nitrosyl compounds, the X-ray structure determinations of which comply with strict quality criteria, were analyzed with respect to the OS issue. As a result, the effective OS method shows a low-spin d8 CoI-NO+ couple instead of a negative OS of the ligand at the BP86/def2-TZVP (+D3, +CPCM with infinite permittivity) level of theory. The same holds for some new members of the linear subclass of {CoNO}8 compounds. For all compounds, a largely invariable "real" charge of ≈ -0.3 e was obtained from population analyses. All of these electron-rich d8 species strive to manage Pauli repulsion between the metal electrons and the lone pair at the nitrosyl's nitrogen atom, with the bending of the CoNO unit as the most frequent escape.

4.
Dalton Trans ; 49(27): 9480-9486, 2020 Jul 21.
Article in English | MEDLINE | ID: mdl-32608457

ABSTRACT

Low temperature stopped-flow techniques were used to investigate the reaction of three different iron(ii) complexes with nitrogen monoxide. The kinetic studies allowed calculation of the activation parameters from the corresponding Eyring plots for all three systems. The reaction of iron(ii) chloride with NO leading to the formation of MNIC (mononitrosyl-iron-complex) and DNIC (dinitrosyl-iron-complex) led to activation parameters of ΔH‡ = 55.4 ± 0.4 kJ mol-1 and ΔS‡ = 13 ± 2 J K-1 mol-1 for MNIC and ΔH‡ = 32 ± 6 kJ mol-1 and ΔS‡ = -193 ± 21 J K-1 mol-1 for DNIC. Formation of MNIC turned out to be much faster in comparison with DNIC. In contrast, activation parameters for the formation of monoculear [Fe(bztpen)(NO)](OTf)2 (bztpen = N-benzyl-N,N',N'-tris(2-pyridylmethyl)-ethylenediamine) ΔH‡ = 17.8 ± 0.8 kJ mol-1 and ΔS‡ = -181 ± 3 J K-1 mol-1 supported an associative mechanism. Interestingly, [Fe(bztpen)(CH3CN)](OTf)2 does not react with dioxygen at all. Furthermore, activation parameters of ΔH‡ = 37.7 ± 0.7 kJ mol-1 and ΔS‡ = -66 ± 3 J K-1 mol-1 were obtained for the reaction of NO with the dinuclear iron(ii) H-HPTB complex (H-HPTB = N,N,N',N'-tetrakis(2-benzimidazolylmethyl)-2-hydroxy-1,3-diaminopropane), [Fe2(H-HPTB)(Cl)3]. The kinetic data allowed postulation of the mechanisms for all of these reactions.

5.
Angew Chem Int Ed Engl ; 59(30): 12381-12386, 2020 Jul 20.
Article in English | MEDLINE | ID: mdl-32339395

ABSTRACT

Nitrosyl-metal bonding relies on the two interactions between the pair of N-O-π* and two of the metal's d orbitals. These (back)bonds are largely covalent, which makes their allocation in the course of an oxidation-state determination ambiguous. However, apart from M-N-O-angle or net-charge considerations, IUPAC's "ionic approximation" is a useful tool to reliably classify nitrosyl metal complexes in an orbital-centered approach.

6.
Angew Chem Int Ed Engl ; 58(25): 8566-8571, 2019 06 17.
Article in English | MEDLINE | ID: mdl-31017715

ABSTRACT

Although the "brown-ring" ion, [Fe(H2 O)5 (NO)]2+ (1), has been a research target for more than a century, this poorly stable species had never been isolated. We now report on the synthesis of crystals of a salt of 1 which allowed us to tackle the unique bonding situation on an experimental basis. As a result of the bonding analysis, two stretched, spin-polarised π-interactions provide the Fe-NO binding-and challenge the concept of "oxidation state".

8.
Chemistry ; 25(5): 1304-1325, 2019 Jan 24.
Article in English | MEDLINE | ID: mdl-30346635

ABSTRACT

Mononitrosyl-iron compounds (MNICs) of the Enemark-Feltham {FeNO}7 type can be divided into a doublet (S=1/2) and a quartet (S=3/2) spin variant. The latter relies on weak-field co-ligands such as amine carboxylates. Aqua-only co-ligation appears to exist in the long-known "brown-ring" [Fe(H2 O)5 (NO)]2+ cation, which was prepared originally from ferrous salts and NO in sulfuric acid. A chloride variant of this species, the green [FeCl3 (NO)]- ion, was first prepared analoguosly by using hydrochloric instead of sulfuric acid. As a tetrahedral species, it is the simple prototype of sulfur-bonded {FeNO}7 (S=3/2) MNICs of biological significance. Although it has been investigated for more than a century, neither clean preparative routes nor reliable structural parameters were available for the [FeCl3 (NO)]- ion and related species such as the [FeCl2 (NO)2 ]- ion, a prototypical dinitrosyliron species (a "DNIC"). In this work, both issues have been resolved. In addition, we report on a computational study on the ground- and excited-state properties including an assignment of the chromophoric transitions. Photoinduced metastable isomers were characterised in a combined experimental and computational approach that resulted in the confirmation of a single photoinduced linkage isomer of the paramagnetic nitrosyl-metal coordination entity.

9.
Chemistry ; 24(60): 16019-16028, 2018 Oct 26.
Article in English | MEDLINE | ID: mdl-30144196

ABSTRACT

The hyponitrite anion is a tentative intermediate in the reduction of nitric oxide (NO) to nitrous oxide (N2 O) catalyzed by nitric-oxide reductase (NOR) in the process of bacterial denitrification. Owing to the considerable number of known coordination modes for the hyponitrito ligand, its actual bonding form in the enzymatic cycle is a point of current discussion. Here, we contribute to the hardly known ligand properties of a key intermediate, the monoprotonated hyponitrite anion. Three air- and water-stable ruthenium complexes with hydrogenhyponitrite as the ligand were synthesized by using commercially available bisphosphane co-ligands (1,2-bis(diphenylphosphino)ethane (dppe), 1,3-bis(diphenylphosphino)propane (dppp), 1,2-bis(diphenylphosphino)ethene (dppv)). The starting compounds [Ru(dppe)2 (tos)]BF4 (1) and [Ru(dppp)2 (tos)]BF4 (2) contained the bidentate coordinating tosylate anion (tos) as a particularly well-suited leaving group. To confirm the protonated and deprotonated species, X-ray diffraction, IR, UV/Vis spectroscopy (solution and solid state), solid-state NMR spectroscopy, and high-resolution mass spectroscopy were used. DFT calculations give insight into the bonding situation. We report on [Ru(dppe)2 (HN2 O2 )]BF4 (5), [Ru(dppp)2 (HN2 O2 )]BF4 (6), [Ru(dppv)2 (HN2 O2 )]BF4 (7), [Ru(dppp)2 (HN2 O2 )]BF4 ⋅Imi (9; Imi=imidazole) as the first mononuclear trans-hydrogenhyponitrite complexes. Isolated deprotonated analogs are [Ru(dppe)2 (N2 O2 )]⋅HImi(BF4 ) (8) and [Ru(dppv)2 (N2 O2 )] ⋅HImi(BF4 )⋅Imi (10).

10.
Acta Crystallogr B Struct Sci Cryst Eng Mater ; 71(Pt 6): 788-97, 2015 Dec 01.
Article in English | MEDLINE | ID: mdl-26634736

ABSTRACT

One single photo-induced linkage NO isomer (PLI) is detected and characterized in the dinitrosyl pentacoordinated compound [RuBr(NO)2(PCyp3)2]BF4 by a combination of photocrystallographic and IR analysis. In the ground state, the molecule adopts a trigonal-bipyramidal structure with the two NO ligands almost linear with angles Ru-N1-O1 = 168.92 (16), Ru-N2-O2 = 166.64 (16)°, and exactly equal distances of Ru-N = 1.7838 (17) and O-N = 1.158 (2) Å. After light irradiation of 405 nm at T = 10 K, the angle of Ru-N2-O2 changes to 114.2 (6)° by rotation of the O atom towards the Br ligand with increased distances of Ru-N2 = 1.992 (6) and N2-O2 = 1.184 (8) Å, forming a bent κN bonded configuration. Using IR spectroscopy, the optimal wavelength and maximum population of 39 (1)% of the PLI is determined. In the ground state (GS), the two symmetric νs(NO) and asymmetric νas(NO) vibrations are measured at 1820 and 1778 cm(-1), respectively. Upon photo-irradiation, the detection of only one new vibrational ν(NO) stretching band at 1655 cm(-1), assigned to the antisymmetric coupled vibration mode and shifted to lower wavenumbers by -123 cm(-1), supports the photocrystallographic result. These experimental results are supported by additional DFT calculations, which reproduce the structural parameters and vibrational properties of both the ground state and the photo-induced linkage isomer well. Especially the experimentally characterized molecular structure of the PLI state corresponds to an energy minimum in the calculations; the stabilization of the bent κN bonded configuration of the PLI state originates from specific intramolecular orbital overlap.

11.
IUCrJ ; 2(Pt 1): 35-44, 2015 Jan 01.
Article in English | MEDLINE | ID: mdl-25610626

ABSTRACT

Multiple light-induced reversible metastable NO linkage isomers (PLIs) have been detected in the dinitrosyl compound [RuCl(NO)2(PPh3)2]BF4 by a combination of photocrystallographic and IR analysis. The IR signature of three PLI states has been clearly identified, with estimated populations of 59% (PLI-1), 8% (PLI-2) and 5% (PLI-3) for a total population of the metastable state of 72%. The structural configuration of the major component (PLI-1) has been derived by X-ray photocrystallography. In the ground state, the structure is characterized by a bent and a linear nitrosyl, the bent one being oriented towards the linear equatorial nitrosyl with an Ru-N-O angle of 133.88 (9)°. X-ray Fourier difference maps indicate a selectivity of the photo-isomerization process in PLI-1: only the bent NO ligand changes its position, while the linear NO is unaffected. After irradiation at 405 nm, the orientation is changed by rotation towards the Cl ligand opposite the linear NO, with an Ru-N-O angle in this new position of 109 (1)°. The photocrystallographic analysis provides evidence that, in the photo-induced metastable state, the bent NO group is attached to the Ru atom through the N atom (Ru-N-O), rather than in an isonitrosyl Ru-O-N binding mode. In the IR spectra, the asymmetric NO vibrational band shifts by -33 cm(-1) to a lower value, whereas the symmetric band splits and shifts by 5 cm(-1) to a higher value and by -8 cm(-1) to a lower value. The down shift is a clear indication of the structural change, and the small upward shift in response to the new electronic configuration of the metastable structure. Variable-temperature IR kinetic measurements in the range 80-114 K show that the decay of the PLI-1 state follows an Arrhenius behaviour with an activation energy of 0.22 eV.

12.
Dalton Trans ; 43(35): 13278-92, 2014 Sep 21.
Article in English | MEDLINE | ID: mdl-25058659

ABSTRACT

Two different structure types were found for a series of mononuclear dinitrosyl complexes of the general formula [RuL2(NO)2X]BF4 (L = monodentate phosphane, X = Cl, Br, I). The {Ru(NO)2}(8)-type target compounds were prepared by the reduction of the respective {RuNO}(6) precursors and subsequent oxidative addition of (NO)BF4. About one half of the new compounds share their molecular structure with the hitherto only representative of this class of dinitrosyls, Pierpont and Eisenberg's [RuCl(NO)2(PPh3)2]PF6·C6H6 (Inorg. Chem., 1972, 11, 1088-1094). The Cs-symmetric cations exhibit both a linear and a bent Ru-N-O fragment, in line with a formal 6 + 2 split of the {Ru(NO)2}(8) electron sum in the sense of a [Ru(II)(NO(+))((1)NO(-))](2+) bonding. The coordination entity's configuration in this subgroup is described by IUPAC's polyhedral symbol SPY-5. Continuous shape measures (CShM) as defined by Alvarez et al. (Coord. Chem. Rev., 2005, 249, 1693-1708) reveal a uniform deviation from the L-M-L angles expected for SPY-5, in a narrower sense, towards a vacant octahedron (vOC-5). DFT calculations confirmed that Enemark and Feltham's analysis (Coord. Chem. Rev., 1974, 13, 339-406) of the electronic situation of the {Ru(NO)2}(8) group remains adequate. The same holds for the second subclass of new compounds the existence of which had been predicted in the same paper by Enemark and Feltham, namely C(2v)-symmetric, TBPY-5-type cations with two almost equally bonded nitrosyl ligands. In agreement with an 8 + 0 distribution of the relevant electrons, the formal [Ru(0)(NO(+))2](2+) entities are found for L/X couples that donate more electron density on the central metal. Two solid compounds (8a/b, 12a/b) were found in both structures including the special case of the P(i)Pr3/Br couple 12a/b, which led to crystals that contained both structure types in the same solid. Conversely, four compounds showed a single form in the solid but both forms in dichloromethane solution in terms of the solutions' IR spectra. The irradiation of crystalline 12 with blue laser light resulted in the photoisomerisation of, mainly, the bent (1)NO(-) ligand in terms of low-temperature IR spectroscopy.


Subject(s)
Borates/chemistry , Nitric Oxide/chemistry , Ruthenium/chemistry , Binding Sites , Borates/metabolism , Crystallization , Nitric Oxide/metabolism , Organophosphorus Compounds/chemistry , Ruthenium/metabolism , Spectrophotometry, Infrared/methods
13.
Eur J Pharm Biopharm ; 86(3): 469-77, 2014 Apr.
Article in English | MEDLINE | ID: mdl-24309008

ABSTRACT

(13)C NMR spectroscopy provides insight into the chemistry of carbohydrate-based ferric preparations. Specifically, it reveals whether oxygen atoms of the carbohydrate are directly bonded to the preparations' ferric centres or whether more distant interactions are present. After having validated the method by investigating the ferric solutions of low-molecular complexes as well as polynuclear ferric samples, it is demonstrated that common constituents of medically used ferric preparations such as sucrose and other glucose-based saccharides do not support ferric carbohydrate chelates. Instead, these carbohydrates reside outside the NMR-spectroscopically 'blinded' region about the ferric centres and experience the so-called Evans effect that can be used to measure the magnetic moment of the solutions. As a result, an easily accessible physicochemical parameter is provided to characterise commercial iron(III) preparations, namely the samples' magnetism in terms of the in situ-measured spin-normalised effective Bohr magneton number µ(eff)(2)/35. The procedure can, moreover, be combined with a facile NMR-spectroscopic iron assay.


Subject(s)
Carbon-13 Magnetic Resonance Spectroscopy/methods , Dietary Supplements , Ferric Compounds/analysis , Ferric Compounds/chemistry , Iron/analysis , Iron/chemistry
15.
Dalton Trans ; 42(16): 5749-54, 2013 Apr 28.
Article in English | MEDLINE | ID: mdl-23450251

ABSTRACT

Sugar phosphates provide metal-binding sites both at their sugar core and at their phosphate group(s). Mixed sugar-core-phosphate chelation has been considered as a typical bonding mode within the physiological pH range for the central metabolite D-fructose 1,6-bisphosphate. The Re(V)O(tmen) metal fragment was used to enrich this coordination type. The formation of the [ReO(tmen)(Fruf2,3H-21,6P2H2-κ(3)O(2,3,P1))](-) monoanion was determined by NMR spectroscopy and mass spectrometry. The model compound rac-glycerol 1-phosphate yielded similar results in terms of NMR spectroscopy. Crystal-structure analyses of [ReO(tmen)(rac-Glyc2,3H-21PH-κ(3)O(2,3,P))]·2H2O and [ReO(phen)(rac-Glyc2,3H-21PH-κ(3)O(2,3,P))]·MeOH confirmed the coordination pattern.


Subject(s)
Chelating Agents/chemistry , Fructosediphosphates/chemistry , Rhenium/chemistry , Sugar Phosphates/chemistry , Coordination Complexes/chemical synthesis , Coordination Complexes/chemistry , Crystallography, X-Ray , Magnetic Resonance Spectroscopy , Molecular Conformation
16.
Chemistry ; 18(34): 10571-84, 2012 Aug 20.
Article in English | MEDLINE | ID: mdl-22786800

ABSTRACT

Alditols ("sugar alcohols", "glycitols") form palladium(II) complexes in neutral aqueous solution if they can provide the threitol partial structure. This requirement excludes erythritol, ribitol, and allitol when applied to the common tetritols, pentitols, and hexitols. The remaining alditols are able to arrange their threo-tetraol-O(4) pattern to an almost planar rhomb, to which four Pd(II) N(2) (N(2) =bidentate nitrogen ligand) centres bind in a butterfly-shaped Pd(4) motif. Bridging is the exclusive bonding mode of the four alkoxido donors. In contrast to the butterfly complexes, all alditols are able to form a species at a pH intermediate between neutrality and the stronger alkaline conditions of non-bridging diolato-palladium(II) binding, namely, the µ-triolato bonding mode. A Pd(2) (µ-triolato) unit shows the middle O atom of a propanetriolato fragment as a bridging ligator, with the lateral O atoms binding in the terminal mode.


Subject(s)
Carbohydrates/chemistry , Palladium/chemistry , Sugar Alcohols/chemistry , Ligands , Models, Molecular , Molecular Structure
17.
Acta Crystallogr Sect E Struct Rep Online ; 67(Pt 10): o2615, 2011 Oct 01.
Article in English | MEDLINE | ID: mdl-22058760

ABSTRACT

The title compound, C(6)H(12)O(5), is the α-pyran-ose form of the reducing aldose 2-de-oxy-d-arabino-hexose. The six-membered pyran-ose ring adopts a (4)C(1) conformation, with the anomeric hy-droxy group in axial and the other substituents in equatorial positions. In the crystal, each of the four hy-droxy groups acts as an inter-molecular hydrogen-bond donor function, resulting in a three-dimensional hydrogen-bonded network.

18.
Carbohydr Res ; 346(13): 1752-9, 2011 Sep 27.
Article in English | MEDLINE | ID: mdl-21816393

ABSTRACT

Phenylboronic acid esters are formed by the three common 2-deoxy aldoses: 2-deoxy-d-erythro-pentose ('2-deoxy-d-ribose'), 2-deoxy-d-lyxo-hexose ('2-deoxy-d-galactose'), and 2-deoxy-d-arabino-hexose ('2-deoxy-d-glucose'). The major species that was formed from equimolar quantities of boronic acid and the aldose, was the 3,4-monoester of the pentopyranose in a skew-boat conformation, and the 4,6-monoester in the case of the two hexopyranoses. A double molar quantity of boronic acid led, for both 2-deoxy-hexoses, to the diester of the open-chain aldehydo isomer as the major product: the 3,5:4,6-diester for the lyxo-configured deoxy-hexose, and the 3,4:5,6-diester of the arabino-configured isomer. Minor products of all reactions were identified by a combined NMR/DFT methodology.


Subject(s)
Boronic Acids/chemistry , Esters/chemistry , Esters/chemical synthesis , Galactose/analogs & derivatives , Galactose/chemistry , Magnetic Resonance Spectroscopy , Molecular Structure , Pentoses/chemistry
19.
Carbohydr Res ; 346(13): 1767-75, 2011 Sep 27.
Article in English | MEDLINE | ID: mdl-21782160

ABSTRACT

Excess di(tert-butyl)silylene (DTBS) bis(trifluoromethanesulfonate) formed bis-DTBS derivatives with the four aldopentoses (arabinose, lyxose, ribose and xylose). The structure of the bis-chelates was affected by the bulk of the DTBS groups and the requirement of flat silacycles in the case of five-membered chelate rings. These restrictions resulted in unusual cyclic bis-chelates for ribofuranose (κO(1,5),κO(2,3) bis-chelate) and lyxopyranose (κO(1,4),κO(2,3) bis-chelate of a twisted boat conformation). Most importantly, all aldopentoses formed bis-chelates of their open-chain aldehydo isomers. The bis-chelates of aldehydo-arabinose and -xylose were κO(2,3),κO(4,5)-bonded and thus exhibited five-membered chelate rings. The bis-chelates of aldehydo-lyxose and -ribose were κO(2,4),κO(3,5)-bonded and resembled six-membered chelate rings. For lyxose, the aldehydo bis-chelate was isolated as a solid. The molecular structures were assigned by a combined (1)H, (13)C, and (29)Si NMR spectroscopic approach, which was supported by X-ray analyses on crystals of the bis-DTBS chelates of κO(1,2),κO(3,5)-bonded rac-xylofuranose, κO(1,5),κO(2,3)-bonded d-ribofuranose, and κO(2,4),κO(3,5)-bonded aldehydo-d-lyxose.


Subject(s)
Lewis Acids/chemistry , Monosaccharides/chemistry , Pentoses/chemistry , Arabinose/chemistry , Binding Sites , Molecular Structure , Ribose/chemistry , Silicon/chemistry , Xylose/chemistry
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