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1.
Sci Rep ; 7(1): 16952, 2017 12 05.
Article in English | MEDLINE | ID: mdl-29209065

ABSTRACT

Many diffusion processes in nature and society were found to be anomalous, in the sense of being fundamentally different from conventional Brownian motion. An important example is the migration of biological cells, which exhibits non-trivial temporal decay of velocity autocorrelation functions. This means that the corresponding dynamics is characterized by memory effects that slowly decay in time. Motivated by this we construct non-Markovian lattice-gas cellular automata models for moving agents with memory. For this purpose the reorientation probabilities are derived from velocity autocorrelation functions that are given a priori; in that respect our approach is "data-driven". Particular examples we consider are velocity correlations that decay exponentially or as power laws, where the latter functions generate anomalous diffusion. The computational efficiency of cellular automata combined with our analytical results paves the way to explore the relevance of memory and anomalous diffusion for the dynamics of interacting cell populations, like confluent cell monolayers and cell clustering.


Subject(s)
Cell Movement , Models, Biological , Probability , Random Allocation , Time Factors
2.
Phys Rev Lett ; 89(21): 214102, 2002 Nov 18.
Article in English | MEDLINE | ID: mdl-12443415

ABSTRACT

A paradigmatic nonhyperbolic dynamical system exhibiting deterministic diffusion is the smooth nonlinear climbing sine map. We find that this map generates fractal hierarchies of normal and anomalous diffusive regions as functions of the control parameter. The measure of these self-similar sets is positive, parameter dependent, and in case of normal diffusion it shows a fractal diffusion coefficient. By using a Green-Kubo formula we link these fractal structures to the nonlinear microscopic dynamics in terms of fractal Takagi-like functions.

3.
Phys Rev E Stat Nonlin Soft Matter Phys ; 66(1 Pt 2): 018201, 2002 Jul.
Article in English | MEDLINE | ID: mdl-12241527

ABSTRACT

Rajagopalan and Sabir [Phys. Rev. E 63, 057201 (2001)] recently discussed deterministic diffusion in a piecewise linear map using an approach developed by Fujisaka et al. We first show that they rederived the random walk formula for the diffusion coefficient, which is known to be the exact result for maps of Bernoulli-type since the work of Fujisaka and Grossmann [Z. Phys. B: Condens. Matter 48, 261 (1982)]. However, this correct solution is at variance to the diffusion coefficient curve presented in their paper. Referring to another existing approach based on Markov partitions, we answer the question posed by the authors regarding solutions for more general parameter values by recalling the finding of a fractal diffusion coefficient. We finally argue that their model is not suitable for studying intermittent behavior, in contrast to what was suggested in their paper.

4.
Phys Rev E Stat Nonlin Soft Matter Phys ; 65(5 Pt 2): 055203, 2002 May.
Article in English | MEDLINE | ID: mdl-12059630

ABSTRACT

The impact of quenched disorder on deterministic diffusion in chaotic dynamical systems is studied. As a simple example, we consider piecewise linear maps on the line. In computer simulations we find a complex scenario of multiple suppression and enhancement of normal diffusion, under variation of the perturbation strength. These results are explained by a theoretical approximation, showing that the oscillations emerge as a direct consequence of the unperturbed diffusion coefficient, which is known to be a fractal function of a control parameter.

5.
Phys Rev E Stat Nonlin Soft Matter Phys ; 65(3 Pt 2A): 036209, 2002 Mar.
Article in English | MEDLINE | ID: mdl-11909214

ABSTRACT

In recent work a deterministic and time-reversible boundary thermostat called thermostating by deterministic scattering was introduced for the periodic Lorentz gas [Phys. Rev. Lett. 84, 4268 (2000)]. Here we assess the nonlinear properties of this dynamical system by numerically calculating its Lyapunov exponents. Based on a revised method for computing Lyapunov exponents, which employs periodic orthonormalization with a constraint, we present results for the Lyapunov exponents and related quantities in equilibrium and nonequilibrium. Finally, we check whether we obtain the same relations between quantities characterizing the microscopic chaotic dynamics and quantities characterizing macroscopic transport as obtained for conventional deterministic and time-reversible bulk thermostats.

6.
Phys Rev Lett ; 84(19): 4268-71, 2000 May 08.
Article in English | MEDLINE | ID: mdl-10990663

ABSTRACT

We present a novel approach for constructing nonequilibrium steady states. It is based on a deterministic and time-reversible mechanism for dissipating energy from a subsystem into a thermal reservoir. The key idea is to thermalize a moving particle by appropriately modeling its microscopic collision rules with a boundary mimicking a thermal reservoir with arbitrarily many degrees of freedom. We demonstrate our method for the periodic Lorentz gas with an external electric field. By applying our thermostat we do not find an ergodic breakdown with increasing field strength.

7.
Article in English | MEDLINE | ID: mdl-11969496

ABSTRACT

We analyze a simple model of deterministic diffusion. The model consists of a one-dimensional array of scatterers with moving point particles. The particles move from one scatterer to the next according to a piecewise linear, expanding, deterministic map on unit intervals. The microscopic chaotic scattering process of the map can be changed by a control parameter. The macroscopic diffusion coefficient for the moving particles is well defined and depends upon the control parameter. We calculate the diffusion coefficent and the largest eigenmodes of the system by using Markov partitions and by solving the eigenvalue problems of respective topological transition matrices. For different boundary conditions we find that the largest eigenmodes of the map match the ones of the simple phenomenological diffusion equation. Our main result is that the diffusion coefficient exhibits a fractal structure as a function of the control parameter. We provide qualitative and quantitative arguments to explain features of this fractal structure.

8.
Article in English | MEDLINE | ID: mdl-11969900

ABSTRACT

We apply a recently proposed thermostating mechanism to an interacting many-particle system where the bulk particles are moving according to Hamiltonian dynamics. At the boundaries the system is thermalized by deterministic and time-reversible scattering. We first show how this scattering mechanism can be related to stochastic boundary conditions. We subsequently simulate thermal conduction and shear flow for a hard disk fluid. By comparing the transport coefficients obtained from computer simulations to theoretical results we find that this thermostating mechanism yields well-defined nonequilibrium steady states in the range of linear response. Furthermore, the conjectured identity between thermodynamic entropy production and exponential phase-space contraction rates is investigated from the standpoint of our formalism. We find that, in general, these quantities do not agree.

9.
Chaos ; 8(2): 409-423, 1998 Jun.
Article in English | MEDLINE | ID: mdl-12779745

ABSTRACT

We study the consequences of deterministic chaos for diffusion-controlled reaction. As an example, we analyze a diffusive-reactive deterministic multibaker and a parameter-dependent variation of it. We construct the diffusive and the reactive modes of the models as eigenstates of the Frobenius-Perron operator. The associated eigenvalues provide the dispersion relations of diffusion and reaction and, hence, they determine the reaction rate. For the simplest model we show explicitly that the reaction rate behaves as phenomenologically expected for one-dimensional diffusion-controlled reaction. Under parametric variation, we find that both the diffusion coefficient and the reaction rate have fractal-like dependences on the system parameter. (c) 1998 American Institute of Physics.

10.
Phys Rev Lett ; 74(3): 387-390, 1995 Jan 16.
Article in English | MEDLINE | ID: mdl-10058745
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