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1.
J Chem Phys ; 144(12): 124102, 2016 Mar 28.
Article in English | MEDLINE | ID: mdl-27036422

ABSTRACT

We investigate a general method to calculate the free energy of crystalline solids by considering the harmonic approximation and quasistatically switching the anharmonic contribution. The advantage of this method is that the harmonic approximation provides an already very accurate estimate of the free energy, and therefore the anharmonic term is numerically very small and can be determined to high accuracy. We further show that the anharmonic contribution to the free energy satisfies a number of exact inequalities that place constraints on its magnitude and allows approximate but fast and accurate estimates. The method is implemented into a readily available general software by combining the code HOODLT (Highly Optimized Object Oriented Dynamic Lattice Theory) for the harmonic part and the molecular dynamics (MD) simulation package HOOMD-blue for the anharmonic part. We use the method to calculate the low temperature phase diagram for Lennard-Jones particles. We demonstrate that hcp is the equilibrium phase at low temperature and pressure and obtain the coexistence curve with the fcc phase, which exhibits reentrant behavior. Several implications of the method are discussed.

2.
Phys Rev Lett ; 106(21): 215501, 2011 May 27.
Article in English | MEDLINE | ID: mdl-21699312

ABSTRACT

DNA linker mediated self-assembly is emerging as a very general strategy for designing new materials. In this Letter, we characterize both the dynamics and thermodynamics of nanoparticle-DNA self-assembly by molecular dynamics simulations from a new coarse-grained model. We establish the general phase diagram and discuss the stability of a previously overlooked crystalline phase (D-bcc). We also characterize universal properties about the dynamics of crystallization. We point out the connection to f-star polymer systems and discuss the implications for ongoing experiments as well as for the general field of DNA mediated self-assembly.


Subject(s)
DNA, Single-Stranded/chemistry , Gold/chemistry , Metal Nanoparticles/chemistry , Molecular Dynamics Simulation , Crystallization
3.
J Chem Phys ; 128(16): 164903, 2008 Apr 28.
Article in English | MEDLINE | ID: mdl-18447496

ABSTRACT

We theoretically investigate general conditions under which an inorganic phase can direct the self-assembly of an ordered polymer nanocomposite. For this purpose, we consider a solution of triblock copolymers forming a hexagonal phase of micelles and investigate the effect of adding attractive particles. We show that if the triblock is functionalized at its ends by attaching groups with specific affinity for the particles, thus effectively becoming a pentablock, the particles direct the self-assembly of the system into phases where both the polymers and the particles exhibit mesoscopic order. Different lamellar and gyroid phases (both with Ia3d and I4(1)32 space symmetries) are presented in detail. Our results show that functionalization is a very powerful route for directing self-assembly of polymer nanocomposites. We briefly discuss the connections with recent theoretical and experimental results in diblock melts with nanoparticles as well as for problems where polymers are used to template the growth of an inorganic phase in solution.

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