Physicochemical Mechanics Instead of Transition State Theory.

This article initially reminds the basics of transition state theory (TST) and gives a textbook example illustrating the often-forgotten problems with TST-based description of reversible reactions. Then, we briefly describe a suggested by us approach called physicochemical mechanics. It was initially developed to describe both the rates and equilibria of chemical mass transport. Here, we show that the same classical mechanics-based approach is working for the kinetics of elementary mono-, bimolecular, and electrochemical reactions. Traditional assumptions regarding pseudoequilibrium for transition state formation are not necessary anymore. A simple interpretation of compensation and tunneling effects is given. The inversion zone for rate constants of strongly exothermic redox reactions is also explained.

Physicochemical Mechanics and Nonequilibrium Chemical Thermodynamics.

Equilibrium thermodynamics answers the question, "by how much?" Nonequilibrium thermodynamics answers the question "how fast?" The physicochemical mechanics approach presented in this article answers both of these questions. It also gives equilibrium laws and expressions for all major transport coefficients and their relations, which was previously impossible. For example, Onsager's reciprocal relations only tell us that symmetric transport coefficients are equal, and even for these, the value is often not known. Our new approach, applicable to non-isolated systems, leads to a new formulation of the second law of thermodynamics and agrees with entropy increase in spontaneous processes for isolated systems. Instead of entropy, it is based on a modified Lagrangian formulation which always increases during system evolution, even in the presence of external fields. This article will present numerous examples of physicochemical mechanics can be applied to various transport processes and their equilibriums, including thermodiffusion and different surface processes. It has been proven that the efficiency of a transport process with an actual steady-state flux (as opposed to a reversible process near equilibrium) is 50%. Finally, an analogy between physicochemical mechanics and some social processes is mentioned.

Interactions of Surfactants with Biomimetic Membranes-2. Generation of Electric Potential with Non-Ionic Surfactants.

It is known that noncharged surfactants lead to electric effects that interact with biomimetic membranes made of nitrocellulose filters, which are impregnated with fatty acid esters. At a surfactant concentration as low as 64 micrometers in one of the solutions, they lead to the transient formation of transmembrane electric potential. Maximum changes of this potential are proportional to the log of noncharged surfactant concentrations when it changes by three orders of magnitude. We explain this new and nontrivial effect in terms of an earlier suggested physicochemical mechanics approach and noncharged surfactants transient changes induced by membrane permeability for inorganic ions. It could be used to imitate the interactions of non-ionic drugs with biological membranes. The effect may also be used in determining the concentration of these surfactants and other non-ionic chemicals of concern, such as pharmaceuticals and personal care products.

Thermodiffusion: The physico-chemical mechanics view.

Thermodiffusion in liquids (the Soret effect) has several unusual properties. In particular, transport can occur with or against a temperature gradient depending on the case. Numerous empirical correlations have been proposed with mixed success or range of applicability. Here, we show that physicochemical mechanics, derived from the Smoluchowski equation as a description of diffusive transport phenomena, is in accord with the experimental and simulated thermodiffusion data from colloidal beads and biomacromolecules to ionic solutions and ultracold fluid mixtures. It yields a simple formula for the Soret coefficient ST based on the reference molar entropy including non-ideality. Hydrodynamic and local non-equilibrium effects are discussed but not included as these are apparently not a major contribution for the wide range of solutes under the near-equilibrium experimental conditions considered here.

Mechanical approach to chemical transport.

Nonequilibrium thermodynamics describes the rates of transport phenomena with the aid of various thermodynamic forces, but often the phenomenological transport coefficients are not known, and the description is not easily connected with equilibrium relations. We present a simple and intuitive model to address these issues. Our model is based on Lagrangian dynamics for chemical systems with dissipation, so one may think of the model as physicochemical mechanics. Using one main equation, the model allows a systematic derivation of all transport and equilibrium equations, subject to the limitation that heat generated or absorbed in the system must be small for the model to be valid. A table with all major examples of transport and equilibrium processes described using physicochemical mechanics is given. In equilibrium, physicochemical mechanics reduces to standard thermodynamics and the Gibbs-Duhem relation, and we show that the First and Second Laws of thermodynamics are satisfied for our system plus bath model. Out of equilibrium, our model provides relationships between transport coefficients and describes system evolution in the presence of several simultaneous external fields. The model also leads to an extension of the Onsager-Casimir reciprocal relations for properties simultaneously transported by many components.

Aquaporin, forward osmosis and biomimetic membranes.

Aquaporin attracted attention not only of physiologists and biophysicists, but also of chemical engineers. Here we critically analyze a paper describing aquaporin-based artificial membranes, suggested for forward osmosis-based water purification (Wang et al. 2012, Small 8, pp. 1185-1190). Related papers published later by the same group are also discussed. We indicate recently developed general approach to describe membrane transport, membrane permeability and selectivity, which is applicable for forward osmosis. In addition, we also mention our papers describing simple nitrocellulose-based membranes, which have selective aqueous channels without proteins, but successfully imitate many properties of biomembranes.

Biomimetic membranes with aqueous nano channels but without proteins: impedance of impregnated cellulose ester filters.

Earlier we have shown that many important properties of ionic aqueous channels in biological membranes can be imitated using simple biomimetic membranes. These membranes are composed of mixed cellulose ester-based filters, impregnated with isopropyl myristate or other esters of fatty acids, and can be used for high-throughput drug screening. If the membrane separates two aqueous solutions, combination of relatively hydrophilic polymer support with immobilized carboxylic groups results in the formation of thin aqueous layers covering inner surface of the pores, while the pore volume is filled by lipid-like substances. Because of these aqueous layers biomimetic membranes even without proteins have a cation/anion ion selectivity and specific (per unit of thickness) electrical properties, which are similar to typical properties of biological membranes. Here we describe frequency-dependent impedance of the isopropyl myristate-impregnated biomimetic membranes in the 4-electrode arrangement and present the results as Bode and Nyquist diagrams. When the membranes are placed in deionized water, it is possible to observe three different dispersion processes in the frequency range 0.1 Hz to 30 kHz. Only one dispersion is observed in 5 mM KH(2)PO(4) solution. It is suggested that these three dispersion features are determined by (a) conductivity in aqueous structures/channels, formed near the internal walls of the filter pores at high frequencies, (b) dielectric properties of the whole membrane at medium frequencies, determined by polymer support, aqueous layers and impregnating oil, and, finally, (c) by the processes in hydrated liquid crystal structures formed in pores by impregnating oil in contact with water at low frequencies.

Acidic lipids, H(+)-ATPases, and mechanism of oxidative phosphorylation. Physico-chemical ideas 30 years after P. Mitchell's Nobel Prize award.

Peter D. Mitchell, who was awarded the Nobel Prize in Chemistry 30 years ago, in 1978, formulated the chemiosmotic theory of oxidative phosphorylation. This review initially analyzes the major aspects of this theory, its unresolved problems, and its modifications. A new physico-chemical mechanism of energy transformation and coupling of oxidation and phosphorylation is then suggested based on recent concepts regarding proteins, including ATPases that work as molecular motors, and acidic lipids that act as hydrogen ion (H(+)) carriers. According to this proposed mechanism, the chemical energy of a redox substrate is transformed into nonequilibrium states of electron-transporting chain (ETC) coupling proteins. This leads to nonequilibrium pumping of H(+) into the membrane. An acidic lipid, cardiolipin, binds with this H(+) and carries it to the ATP-synthase along the membrane surface. This transport generates gradients of surface tension or electric field along the membrane surface. Hydrodynamic effects on a nanolevel lead to rotation of ATP-synthase and finally to the release of ATP into aqueous solution. This model also explains the generation of a transmembrane protonmotive force that is used for regulation of transmembrane transport, but is not necessary for the coupling of electron transport and ATP synthesis.

Ion/electron coupled transport through polyaniline membrane: fast transmembrane redox reactions at neutral pH.

Different oxidizing and reducing agents can be separated by a solid polymer membrane, but they still react. The possibility to conduct this type of transmembrane redox reactions coupled with electroneutral electron/chloride countertransport is demonstrated here for polyaniline (PANI) membrane doped with camphor sulfonic acid (CSA). For the 80 microm film, the transmembrane reaction rate can be as high as 5 x 10 (-8) mol/(cm (2) s) with FeCl 3 as the oxidizing and ascorbic acid as the reducing agents, which is approximately 25 times higher than described by us earlier with HCl-doped PANI membrane. Both solutions separated by the membrane with CSA can have pH near neutral, which is impossible with HCl-doping. Advanced kinetic mechanism of electron/ion coupled transport including chloride equilibrium at the interface is proposed, and major kinetic parameters are estimated. Interfacial redox rate constants (cm/s) are compared with the rate constants determined for polarized membranes by electrochemical methods and also with usual first and second order rate constants in the bulk volume. Possibility to conduct different redox reactions between substances which are not mixed and are separated by a membrane makes this new process very attractive for chemical and environmental engineering.

DSC and EPR investigations on effects of cholesterol component on molecular interactions between paclitaxel and phospholipid within lipid bilayer membrane.

Differential scanning calorimetry (DSC) and electron paramagnetic resonance spectroscopy (EPR) were applied to investigate effects of cholesterol component on molecular interactions between paclitaxel, which is one of the best antineoplastic agents found from nature, and dipalmitoylphosphatidylcholine (DPPC) within lipid bilayer vesicles (liposomes), which could also be used as a model cell membrane. DSC analysis showed that incorporation of paclitaxel into the DPPC bilayer causes a reduction in the cooperativity of bilayer phase transition, leading to a looser and more flexible bilayer structure. Including cholesterol component in the DPPC/paclitaxel mixed bilayer can facilitate the molecular interaction between paclitaxel and lipid and make the tertiary system more stable. EPR analysis demonstrated that both of paclitaxel and cholesterol have fluidization effect on the DPPC bilayer membranes although cholesterol has more significant effect than paclitaxel does. The reduction kinetics of nitroxides by ascorbic acid showed that paclitaxel can inhibit the reaction by blocking the diffusion of either the ascorbic acid or nitroxide molecules since the reaction is tested to be a first order one. Cholesterol can remarkably increase the reduction reaction speed. This research may provide useful information for optimizing liposomal formulation of the drug as well as for understanding the pharmacology of paclitaxel.

Reduced cardiac output is associated with decreased mitochondrial efficiency in the non-ischemic ventricular wall of the acute myocardial-infarcted dog.

Cardiogenic shock is the leading cause of death among patients hospitalized with acute myocardial infarction (MI). Understanding the mechanisms for acute pump failure is therefore important. The aim of this study is to examine in an acute MI dog model whether mitochondrial bio-energetic function within non-ischemic wall regions are associated with pump failure. Anterior MI was produced in dogs via ligation of left anterior descending (LAD) coronary artery, that resulted in an infract size of about 30% of the left ventricular wall. Measurements of hemodynamic status, mitochondrial function, free radical production and mitochondrial uncoupling protein 3 (UCP3) expression were determined over 24 h period. Hemodynamic measurements revealed a > 50% reduction in cardiac output at 24 h post infarction when compared to baseline. Biopsy samples were obtained from the posterior non-ischemic wall during acute infarction. ADP/O ratios for isolated mitochondria from non-ischemic myocardium at 6 h and 24 h were decreased when compared to the ADP/O ratios within the same samples with and without palmitic acid (PA). GTP inhibition of (PA)-stimulated state 4 respiration in isolated mitochondria from the non-ischemic wall increased by 7% and 33% at 6 h and 24 h post-infarction respectively when compared to sham and pre-infarction samples. This would suggest that the mitochondria are uncoupled and this is supported by an associated increase in UCP3 expression observed on western blots from these same biopsy samples. Blood samples from the coronary sinus measured by electron paramagnetic resonance (EPR) methods showed an increase in reactive oxygen species (ROS) over baseline at 6 h and 24 h post-infarction. In conclusion, mitochondrial bio-energetic ADP/O ratios as a result of acute infarction are abnormal within the non-ischemic wall. Mitochondria appear to be energetically uncoupled and this is associated with declining pump function. Free radical production may be associated with the induction of uncoupling proteins in the mitochondria.

Antiplasmodial activity of ferrocenyl chalcones: investigations into the role of ferrocene.

A series of ferrocenyl chalcones were synthesized and evaluated in vitro against Plasmodium falciparum (K1) in a [3H] hypoxanthine uptake assay. Appropriate size, electronic, lipophilic and electrochemical parameters were determined for QSAR analysis. The results showed that the location of ferrocene influenced the ease of oxidation of Fe2+ in ferrocene and the polarity of the carbonyl linkage. These parameters were found to influence antiplasmodial activity. A general trend was noted in which compounds with ferrocene adjacent to the carbonyl linkage (series A) were associated with more selective and potent antiplasmodial activities. These compounds had polarized carbonyl linkages, lower lipophilicities and ferrocene rings that were less readily oxidized. The most active analogue was 1-ferrocenyl-3-(4-nitrophenyl)prop-2-en-1-one (28) (IC50 4.6 microM, selectivity index 37 against KB3-1 cells). To understand how the redox properties of ferrocene might influence antiplasmodial activity, the oxidant properties of selected compounds were investigated in antioxidant (ABTS+) and EPR experiments. The incorporation of ferrocene in the chalcone template was found to enhance its role in processes that involved the quenching and generation of free radicals. Thus, ferrocene may participate in redox cycling and this process may contribute to the antiplasmodial activity of ferrocenyl chalcones. However, the extent to which this property is manifested is also influenced by other physicochemical properties (lipophilicity, polarity, and planarity) of the compound.

Antioxidant pool in beer and kinetics of EPR spin-trapping.

The kinetics of spin-trap adduct formation in beer oxidation exhibits an induction period if the reaction is carried out at elevated temperatures and in the presence of air. This lag period lasts until the endogenous antioxidants are almost completely depleted, and its duration is used as an indicator of the flavor stability and shelf life of beer. This paper demonstrates that the total kinetics of the process can be characterized by three parameters-the lag period, the rate of spin-trap adduct formation, and, finally, the steady-state spin-adduct concentration. A steady-state chain reaction mechanism is described, and quantitative estimates of the main kinetic parameters such as the initiation rate, antioxidant pool, effective content of organic molecules participating in the chain reactions, and the rate constant of the 1-hydroxyethyl radical EtOH(*) spin-adduct disappearance are given. An additional new dimensionless parameter is suggested to characterize the antioxidant pool-the product of the lag time and the rate of spin-trap radical formation immediately after the lag time, normalized by the steady-state concentration of the adducts. The results of spin-tapping EPR experiments are compared with the nitroxide reduction kinetics measured in the same beer samples. It is shown that although the kinetics of nitroxide reduction in beer can be used to evaluate the reducing power of beer, the latter parameter does not correlate with the antioxidant pool. The relationship of free radical processes, antioxidant pool, reducing power, and beer staling is discussed.

Synchrotron radiation-induced formation and reactions of free radicals in human acellular dermal matrix.

The present work characterizes the formation of free radicals in an implantable human acellular dermal tissue (Alloderm, LifeCell Corp., Branchburg, NJ) upon irradiation. The tissue was preserved in a vitreous carbohydrate matrix by freeze-drying. Freeze-dried samples were irradiated using a synchrotron light source, and free radicals generated were investigated using the electron paramagnetic resonance (EPR) technique. At least two free radical populations, with g factors of 1.993 (approximately 43%) and 2.002 (approximately 57%), respectively, were identified in the irradiated tissue. The transformation (reaction) kinetics of free radicals produced was investigated in the presence of nitrogen, oxygen and moisture. The reaction kinetics of free radicals was extremely slow in the nitrogen environment. The presence of oxygen and moisture greatly accelerated free radical reactions in the tissue matrix. The reaction of free radicals could not be described by traditional reaction kinetics. A dispersive kinetics model and a diffusion model were developed to analyze the reaction kinetics in the present study. The dispersive model took into consideration molecular mobility and dispersivity of free radicals in the heterogeneous tissue material. The diffusion model described the radical reaction kinetics as two parallel and simultaneous processes: a first-order fast kinetics mainly on tissue surface and a diffusion-limited slow kinetics in deeper layers of the tissue matrix. Both models described quantitative experimental data well. Further investigation is needed to verify whether any of these two models or concepts describes the inherent radical reaction kinetics in the solid tissue matrix.

Use of nitroxide spin probes and electron paramagnetic resonance for assessing reducing power of beer. role of SH groups.

Intensity of EPR spectra of stable organic free radicals, nitroxides, is decreasing with time if the radicals are dissolved in beer. The process is determined by a chemical reaction of nitroxide reduction by components naturally present in beer. Kinetics can be described as a simple irreversible first order with respect to both nitroxide and one reducing agent. Effective concentration of the reducing agent and the corresponding reaction rate constant has been determined. It is demonstrated that the nitroxide reduction is sensitive to the presence of solvent-accessible SH groups of proteins present in beer. It is proposed that quantitative analysis of reduction kinetics of small water-soluble nitroxide radicals such as TEMPO and TEMPOL can be used to assess the reducing power of beer. The effect of accelerated aging of beer achieved at elevated temperatures on nitroxide reduction kinetics is demonstrated.

Redox reactions without direct contact of the reactants. Electron and ion coupled transport through polyaniline membrane.

It is demonstrated that Fe3+ in one solution can be reduced to Fe2+ by ascorbic acid in another solution when both aqueous solutions are separated by polyaniline membrane. This transmembrane redox process is possible due to electron/anion coupled counter transport through polyaniline membrane. It was demonstrated that at least one of the solutions must have acidic pH to initiate the transmembrane redox reaction. Both redox processes on the solution/membrane interfaces and the electron/ion coupled transport through the membrane play important role in determining the rate of transmembrane reaction. Possible kinetic mechanism is proposed. Apparent "diffusion coefficients" for redox equivalents inside polyaniline membrane and the rate constants of redox reactions on both solution/membrane interfaces are estimated. Maximal transmembrane reaction rate is 2 x 10(-9) mol/(s cm2) in terms of transport of redox equivalents through the membrane and formation of Fe2+. This value is much higher than the typical values of the rates of respiration in mitochondria expressed in the same units. For thin membranes, the rates of transmembrane redox reactions are determined by interface processes and characteristic times are comparable to those in biomembranes.