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1.
Curr Biol ; 34(6): 1168-1182.e7, 2024 03 25.
Article in English | MEDLINE | ID: mdl-38335959

ABSTRACT

The Earth's oceans brim with an incredible diversity of microscopic lifeforms, including motile planktonic larvae, whose survival critically depends on effective dispersal in the water column and subsequent exploration of the seafloor to identify a suitable settlement site. How their nervous systems mediate sensing of diverse multimodal cues remains enigmatic. Here, we uncover that the tunicate Ciona intestinalis larvae employ ectodermal sensory cells to sense various mechanical and chemical cues. Combining whole-brain imaging and chemogenetics, we demonstrate that stimuli encoded at the periphery are sufficient to drive global brain-state changes to promote or impede both larval attachment and metamorphosis behaviors. The ability of C. intestinalis larvae to leverage polymodal sensory perception to support information coding and chemotactile behaviors may explain how marine larvae make complex decisions despite streamlined nervous systems.


Subject(s)
Ciona intestinalis , Ciona , Animals , Larva , Metamorphosis, Biological/physiology , Perception
2.
Nat Commun ; 12(1): 6569, 2021 11 12.
Article in English | MEDLINE | ID: mdl-34772921

ABSTRACT

Calcium imaging is an increasingly valuable technique for understanding neural circuits, neuroethology, and cellular mechanisms. The analysis of calcium imaging data presents challenges in image processing, data organization, analysis, and accessibility. Tools have been created to address these problems independently, however a comprehensive user-friendly package does not exist. Here we present Mesmerize, an efficient, expandable and user-friendly analysis platform, which uses a Findable, Accessible, Interoperable and Reproducible (FAIR) system to encapsulate the entire analysis process, from raw data to interactive visualizations for publication. Mesmerize provides a user-friendly graphical interface to state-of-the-art analysis methods for signal extraction & downstream analysis. We demonstrate the broad scientific scope of Mesmerize's applications by analyzing neuronal datasets from mouse and a volumetric zebrafish dataset. We also applied contemporary time-series analysis techniques to analyze a novel dataset comprising neuronal, epidermal, and migratory mesenchymal cells of the protochordate Ciona intestinalis.


Subject(s)
Calcium , Image Processing, Computer-Assisted/methods , Imaging, Three-Dimensional/methods , Animals , Computational Biology/methods , Data Curation , Electronic Data Processing , Mice , Software , User-Computer Interface , Zebrafish
3.
J Neuropathol Exp Neurol ; 74(1): 64-74, 2015 Jan.
Article in English | MEDLINE | ID: mdl-25470350

ABSTRACT

Reactive astrogliosis is associated with many pathologic processes in the central nervous system, including gliomas. The glycoprotein podoplanin (PDPN) is upregulated in malignant gliomas. Using a syngeneic intracranial glioma mouse model, we show that PDPN is highly expressed in a subset of glial fibrillary acidic protein-positive astrocytes within and adjacent to gliomas. The expression of PDPN in tumor-associated reactive astrocytes was confirmed by its colocalization with the astrocytic marker S100ß and with connexin43, a major astrocytic gap junction protein. To determine whether the increase in PDPN is a general feature of gliosis, we used 2 mouse models in which astrogliosis was induced either by a needle injury or ischemia and observed similar upregulation of PDPN in reactive astrocytes in both models. Astrocytic PDPN was also found to be coexpressed with nestin, an intermediate filament marker for neural stem/progenitor cells. Our findings confirm that expression of PDPN is part of the normal host response to brain injury and gliomas, and suggest that it may be a novel cell surface marker for a specific population of reactive astrocytes in the vicinity of gliomas and nonneoplastic brain lesions. The findings also highlight the heterogeneity of glial fibrillary acidic protein-positive astrocytes in reactive gliosis.


Subject(s)
Brain Injuries/metabolism , Brain Neoplasms/pathology , Gene Expression Regulation, Neoplastic/physiology , Glioma/pathology , Gliosis/metabolism , Membrane Glycoproteins/metabolism , Animals , Astrocytes/metabolism , Astrocytes/pathology , Brain Injuries/etiology , Brain Injuries/pathology , Calcium-Binding Proteins/metabolism , Cell Line, Tumor , Connexin 43/metabolism , Disease Models, Animal , Female , Glial Fibrillary Acidic Protein/metabolism , Magnetic Resonance Imaging , Male , Mice , Mice, Inbred C57BL , Microfilament Proteins/metabolism , Nestin/metabolism , S100 Calcium Binding Protein beta Subunit/metabolism
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