Comparison of adsorption probabilities of O2 and CO on copper cluster cations and anions.

Reactions of size-selected copper cluster cations and anions, Cu(n)(±), with O(2) and CO have been systematically investigated under single collision conditions by using a tandem-mass spectrometer. In the reactions of Cu(n)(±) (n = 3-25) with O(2), oxidation of the cluster is prominently observed with and without releasing Cu atoms at the collision energy of 0.2 eV. The reactivity of Cu(n)(+) is governed to some extent by the electronic shell structure; the relatively small reaction cross sections observed at n = 9 and 21 correspond to the electronic shell closings, and those at odd sizes in n ≤ 16 match with the clusters having no unpaired electron. On the other hand, the reactivity of Cu(n)(-) exhibits no remarkable decrease by the electronic shell closings and the even-numbered electrons. These behaviors may be due to an influence of the electron detachment of the reaction intermediate, Cu(n)O(2)(-). Both the cations and anions show the dominant formation of Cu(n-1)O(2)(±) in n ≤ 16 and Cu(n)O(2)(±) in n ≥ 17 in the experimental time window. By contrast, Cu(n)(-) (n = 3-11) do not react with CO at the collision energy of 0.2 eV, while Cu(n)(+) (n = 3-19) adsorb CO though the cross sections are relatively small. The difference in the reactivity between the charge states can be understood in terms of the frontier orbitals of the Cu cluster and O(2) or CO.

Selective decomposition of nucleic acids by laser irradiation on probe-tethered gold nanoparticles in solution.

We have developed a new method for selective decomposition of nucleic acids. The method utilizes a high temperature and pressure region (HTP region, hereafter) around a gold nanoparticle, which was generated when the gold nanoparticle was irradiated with a pulsed laser in aqueous solution. A probe DNA molecule whose sequence was complementary to a part of a target DNA molecule was bound to the gold nanoparticle surface. In a solution containing both the target and non-target DNA molecules, the gold nanoparticle selectively attached to the target DNA through hybridization of the probe DNA. When the gold nanoparticle was excited by a pulsed laser, the HTP region was generated in the close vicinity of the gold nanoparticle and then the target DNA molecules inside of this region were decomposed. The non-target DNA molecules having no part complementary to the probe DNA were scarcely decomposed by laser irradiation. When the gold nanoparticle was excited by an intense laser, the non-target DNA molecules were also decomposed, because some of them were located inside the inflated HTP region. We discussed the mechanism of the decomposition of the DNA molecules by the HTP region.

Enhancement of ammonia dehydrogenation by introduction of oxygen onto cobalt and iron cluster cations.

Reactions of oxygen-chemisorbed cobalt and iron cluster cations (Co(n)O(m)(+) and Fe(n)O(m)(+); n = 3-6, m = 1-3) with an NH(3) molecule have been investigated in comparison with their bare metal cluster cations at a collision energy of 0.2 eV by use of a guided ion beam tandem mass spectrometer. We have observed three kinds of reaction products, which come from NH(3) chemisorption with and without release of a metal atom from the cluster and dehydrogenation of the chemisorbed NH(3). Reaction cross sections and branching fractions are strongly influenced by the number of oxygen atoms introduced onto the metal clusters. Oxygen-chemisorbed metal clusters with particular compositions such as Co(4)O(+), Co(5)O(2)(+), and Fe(5)O(2)(+) are extremely reactive for NH(3) dehydrogenation, whereas Co(4)O(2)(+) and Fe(4)O(2)(+) exhibit high reactivity for NH(3) chemisorption with metal release. The enhancement of dehydrogenation for specific compositions can be interpreted in terms of competition between O-H and neighboring Co-H (or Fe-H) formation.

Photon-trap spectroscopy applied to molecules adsorbed on a solid surface: probing with a standing wave versus a propagating wave.

We apply photon-trap spectroscopy, a generalized scheme of cavity ringdown spectroscopy, to infrared spectroscopy of molecular adsorbates on a solid substrate. The storage lifetime of light in a high-finesse Fabry-Perot cavity provides a high absorbance sensitivity for the substrate sample, which is placed exactly normal to the light beam in the cavity to minimize optical losses. Infrared spectra of the C-H stretching vibration of alkylsiloxane monolayer films on a silicon substrate are measured in three ways, namely by employing pulsed and continuous-wave lasers as well as by conventional Fourier transform infrared spectroscopy. The magnitude of optical absorption is shown to vary by the character of the interacting light used in the measurement, i.e., a standing wave versus a propagating wave.

Structures and reactions of methanol molecules on cobalt cluster ions studied by infrared photodissociation spectroscopy.

Structures of methanol molecules chemisorbed on cobalt cluster ions, Co(n)(+) (n=2-6), were investigated by infrared photodissociation (IR-PD) spectroscopy in the wavenumber range of 3400-4000 cm(-1). All the IR-PD spectra measured exhibit an intense peak in the region of the OH stretching vibration. In the IR-PD spectra of Co(2)(+)(CH(3)OH)(2,3) and Co(3)(+)(CH(3)OH)(3), weak peaks were observed additionally in the vicinity of 3000 cm(-1), being assignable to the CH stretching vibration. The comparison of the experimental results with the calculated ones leads us to conclude that (1) molecularly chemisorbed species, Co(n)(+)(CH(3)OH)(m) (m=1-3), and dissociatively chemisorbed species, Co(n)(+)(CH(3)OH)(m-1)(CH(3))(OH), are dominant and (2) the methanol dehydrogenation proceeds via an intermediate, Co(n)(+)(CH(3))(OH).

Photon-trap spectroscopy of mass-selected ions in an ion trap: optical absorption and magneto-optical effects.

A novel experimental technique has been developed to observe a trace of optical absorption of free mass-selected ions. The technique combines a linear radio-frequency ion trap with a high-finesse optical cavity to perform cavity ring-down spectroscopy (photon-trap spectroscopy for generality), where the storage lifetime of photons in the cavity provides a sensitivity high enough to probe the trapped ions. Absorption spectra of the manganese ion Mn(+) are presented, showing hyperfine structures for the (7)P(2,3,4)<--(7)S(3) transitions in the ultraviolet range. Implementation of a solenoidal magnet allows us to observe the Zeeman splitting and the Faraday rotation as well.

Detection of OH stretching mode of CH3OH chemisorbed on Ni3+ and Ni4+ by infrared photodissociation spectroscopy.

Structures of nickel cluster ions adsorbed with methanol, Ni3+ (CH3OH)m (m = 1-3) and Ni4+ (CH3OH)m (m = 1-4) were investigated by using infrared photodissociation (IR-PD) spectroscopy based on a tandem-type mass spectrometer, where they were produced by passing Ni3,4+ through methanol vapor under a multiple collision condition. The IR-PD spectra were measured in the wavenumber region between 3100 and 3900 cm-1. In each IR-PD spectrum, a single peak was observed at a wavenumber lower by approximately 40 cm-1 than that of the OH stretching vibration of a free methanol molecule and was assigned to the OH stretching vibrations of the methanol molecules in Ni3,4+ (CH3OH)m. The photodissociation was analyzed by assuming that Ni3,4+ (CH3OH)m dissociate unimolecularly after the photon energy absorbed by them is statistically distributed among the accessible modes of Ni3,4+ (CH3OH)m. In comparison with the calculations performed by the density functional theory, it is concluded that (1) the oxygen atom of each methanol molecule is bound to one of the nickel atoms in Ni3,4+ (defined as molecular chemisorption), (2) the methanol molecules in Ni3,4+ (CH3OH)m do not form any hydrogen bonds, and (3) the cross section for demethanation [CH4 detachment from Nin+ (CH3OH)] is related to the electron density distribution inside the methanol molecule.

Infrared spectra of organic monolayer films in a standing wave measured by photon-trap spectroscopy.

Photon-trap spectroscopy, a generalized scheme of cavity ringdown spectroscopy, is applied to measure an infrared spectrum of the C-H stretching vibration of alkylsiloxane monolayer films grafted on a silicon substrate. A continuous-wave laser beam is introduced into a high-finesse Fabry-Pérot cavity containing the substrate placed exactly normal to the light beam to minimize optical losses. The lifetime of the light trapped in the cavity is measured to detect optical absorption sensitively. The results show clear dependence of the absorbance on the location of the monolayers with respect to a standing wave formed in the cavity; the absorbance is practically zero when the monolayers on both the surfaces are adjusted at nodes, whereas it is maximized at antinodes. The present experiment is materialized on the basis of the principles established by our previous study [Terasaki et al., J. Opt. Soc. Am. B 22, 675 (2005)].

Reactions of nitrogen monoxide on cobalt cluster ions: reaction enhancement by introduction of hydrogen.

Absolute cross sections for NO chemisorption, NO decomposition, and cluster dissociation in the collision of a nitrogen monoxide molecule, NO, with cluster ions Con+ and ConH+ (n=2-5) were measured as a function of the cluster size, n, in a beam-gas geometry in a tandem mass spectrometer. Size dependency of the cross sections and the change of the cross sections by introduction of H to Con+ (effect of H-introduction) are explained by a statistical model based on the RRK theory, with the aid of the energetics obtained by a DFT calculation. It was found that the reactions are governed by the energetics rather than dynamics. For instance, Co3+ does not react appreciably with NO because the reactions are endothermic, while Co3H+ does because the reaction becomes exothermic by the H-introduction.

Ab initio molecular dynamics study of methanol adsorption on copper clusters.

The preferential structures of small copper clusters Cun (n=2-9) and the adsorption of methanol molecules on these clusters are examined with first principles, molecular dynamics simulations. The results show that the copper clusters undergo systematic changes in bond length and bond order associated with altering their preferential structures from one-dimensional structures, to two-dimensional and three-dimensional structures. The results also indicate that low coordination number sites on the copper clusters are both the most favorable for methanol adsorption and have the greatest localization of electronic charge. The simulations predict that charge transfer between the neutral copper clusters and the incident methanol molecules is a key process by which adsorption is stabilized. Importantly, the changes in the dimensionality of the copper clusters do not significantly influence methanol adsorption.

How many metal atoms are needed to dehydrogenate an ethylene molecule on metal clusters?: Correlation between reactivity and electronic structures of Fen+, Con+, and Nin+.

The absolute cross section for dehydrogenation of an ethylene molecule on Mn+ [Fen+ (n = 2-28), Con+ (n = 8-29), and Nin+ (n = 3-30)] was measured as a function of the cluster size n in a gas-beam geometry at a collision energy of 0.4 eV in the center-of-mass frame in an apparatus equipped with a tandem-type mass spectrometer. It is found that (1) the dehydrogenation cross section increases rapidly above a cluster size of approximately 18 on Fen+, approximately 13 and approximately 18 on Con+, and approximately 10 on Nin+ and (2) the rapid increase of the cross section for Mn+ occurs at a cluster size where the 3d electrons start to contribute to the highest occupied levels of Mn+. These findings lead us to conclude that the 3d electrons of Mn+ play a central role in the dehydrogenation on Mn+.

Energetics of the manganese oxide cluster cations Mn(N)O+ (N = 2-5): role of oxygen in the binding of manganese atoms.

The photodissociation of manganese oxide cluster cations Mn(N)O+ (N = 2-5), into Mn(N-1)O+ (one-atom loss) and Mn(N-2)O+ (two-atom), was investigated in the photon-energy range of 1.08-2.76 eV. The bond-dissociation energies D0(Mn(N-1)O+...Mn) for N = 3, 4, and 5 were determined to be 1.84+/-0.03, 0.99+/-0.05, and 1.25+/-0.14 eV, respectively, from the threshold energies for the one- and two-atom losses. As Mn2O+ did not dissociate even at the highest photon energy used, the bond dissociation energy of Mn2O+, D0(Mn+...MnO), was obtained from a density-functional-theory calculation to be 3.04 eV. The present findings imply that the core ion Mn2O+ is bound weakly with the rest of the manganese atoms in Mn(N)O+.

Degradation of protein in nanoplasma generated around gold nanoparticles in solution by laser irradiation.

We developed a method of protein degradation in an aqueous solution containing gold nanoparticles by irradiation of a pulse laser. In the present study, lysozyme was used as an example. Lysozyme degradation proceeded most efficiently when a pH of the solution was adjusted so that it was at the isoelectric point. The scheme of the lysozyme degradation is as follows: (1) Lysozyme molecules in the solution are neutralized and adsorbed on the gold nanoparticles with its pH value adjusted at the isoelectric point, (2) nanoplasma is generated in the close vicinity of a gold nanoparticle which is excited by an intense 532-nm laser, (3) lysozyme molecules in the nanoplasma are degraded into small fragments. Lysozyme degradation does not proceed efficiently at a pH value deviated from the isoelectric point because the lysozyme molecules are dissolved uniformly so that only a small portion of the lysozyme molecules are located in the vicinity of gold nanoparticles which create the nanoplasma.

Electronic structures of size-selected single-layered platinum clusters on silicon(111)-7x7 surface at a single cluster level by tunneling spectroscopy.

Tunneling spectra of size-selected single-layered platinum clusters (size range of 5-40) deposited on a silicon(111)-7x7 surface were measured individually at a temperature of 77 K by means of a scanning tunneling microscope (STM), and the local electronic densities of states of individual clusters were derived from their tunneling spectra measured by placing an STM tip on the clusters. In a bias-voltage (V(s)) range from -3 to 3 V, each tunneling spectrum exhibits several peaks assignable to electronic states associated with 5d states of a constituent platinum atom and an energy gap of 0.1-0.6 eV in the vicinity of V(s)=0. Even when platinum cluster ions having the same size were deposited on the silicon(111)-7x7 surface, the tunneling spectra and the energy gaps of the deposited clusters are not all the same but can be classified in shape into several different groups; this finding is consistent with the observation of the geometrical structures of platinum clusters on the silicon(111)-7x7 surface. The mean energy gap of approximately 0.4 eV drops to approximately 0.25 eV at the size of 20 and then decreases gradually as the size increases, consistent with our previous finding that the cluster diameter remains unchanged, but the number density of Pt atoms increases below the size of 20 while the diameter increases, but the density does not change above it. It is concluded that the mean energy gap tends to decrease gradually with the mean cluster diameter. The dependence of the mean energy gap on the mean Pt-Pt distance shows that the mean energy gap decreases sharply when the mean Pt-Pt distance exceeds that of a platinum metal (0.28 nm).

Weak metal-metal bonding in small manganese cluster ions, Mn(N)+ (N < or = 7).

The binding energies of manganese cluster ions Mn(N)+ (N = 5-7) were determined by the photodissociation experiments in the near-infrared and visible-photon-energy ranges. The bond dissociation energies of Mn(N)+, D0(Mn(N-1)+...Mn), were obtained to be 1.70+/-0.08, 1.04+/-0.10, and 1.46+/-0.11 eV, respectively, for N = 5, 6, and 7 from the threshold energies for the two-atom loss processes and the bond dissociation energies of Mn3(+) and Mn4(+) reported previously [A. Terasaki et al., J. Chem. Phys. 117, 7520 (2002)]. Correspondingly, binding energies per atom are obtained to be 0.99+/-0.03, 1.00+/-0.03, and 1.06+/-0.03 eV/at. for N = 5, 6, and 7, respectively. A gradual increase in the binding energy from N = 2 to N = 7 shows an increasing contribution of nonbonding 3d orbitals to the bonding via weak hybridization with valence 4s orbitals as the cluster size increases. These binding energies per atom are still much smaller than the bulk cohesive energy of manganese (2.92 eV/at.), and this finding indicates exceptionally weak metal-metal bonds in this size range.

Formation of Au(III)-DNA coordinate complex by laser ablation of Au nanoparticles in solution.

We discovered that an Au(III)-DNA coordinate complex, Au(III)(DNA-base)2(amine)L, are formed by laser ablation of Au nanoparticles in an aqueous solution containing DNA molecules in the presence of amines and multi-valent cations, where L represents an unknown ligand (either amine or water). Optical absorption spectrum of the solution after laser ablation exhibited a 360 nm absorption peak assined to ligand-->Au(III) charge transfer (LMCT) band of the coordinate complex. The complex is considered to be formed as follows: (1) the DNA molecules are neutralized by binding the multi-valent cations to their negatively charged phosphate groups, and adsorbed on the surface of the Au nanoparticles by a hydrophobic interaction, (2) Au(III) ions are liberated from the Au nanoparticles by laser ablation, and (3) an Au(III) ion reacts with amine and two DNA bases of a DNA molecule into an Au(III)(DNA-base)2(amine)L.

Polymerization of ethylene molecules chemisorbed on CrOH+ as a model system of chromium-containing catalyst.

The reaction process of the production of CrOH(C2H4)2(+) was studied in connection with the ethylene polymerization on a silica-supported chromium oxide catalyst (the Phillips catalyst). Cluster ions CrOH(C2H4)2(+) and CrOH(C4H8)+ were produced by the reactions of CrOH+ with C2H4 (ethylene) and C4H8 (1-butene), respectively, and were allowed to collide with a Xe atom under single collision conditions. The cross section for dissociation of each parent cluster ion was measured as a function of the collision energy (collision-induced dissociation, or CID). It was found that (i) the CID cross section for the production of CrOH+ from CrOH(C2H4)2(+) increases sharply at the threshold energy of 3.16 +/- 0.22 eV and (ii) the CID cross section for the production of CrOH+ and C4H8 from CrOH(C4H8)+ also increases sharply at the threshold energy of 3.26 +/- 0.21 eV. In comparison with the calculations based on a B3LYP hybrid density functional method, it is concluded that two ethylene molecules in CrOH(C2H4)2(+) are polymerized to become 1-butene. The calculation also shows that the dimerization proceeds via CrOH(C2H4)+ (ethylene complex) and CrOH(C2H4)2(+) (ethylene complex), in which the ethylene molecules bind with CrOH+ through a pi-bonding.

Size-specific reactions of copper cluster ions with a methanol molecule.

Chemisorption of a methanol molecule onto a size-selected copper cluster ion, Cu(n)+ (n = 2-10), and subsequent reactions were investigated in a gas-beam geometry at a collision energy less than 2 eV in an apparatus based on a tandem-type mass spectrometer. Mass spectra of the product ions show that the following two reactions occur after chemisorption: dominant formation of Cu(n-1)+(H)(OH) (H(OH) formation) in the size range of 4-5 and that of Cu(n)O+ (demethanation) in the size range of 6-8 in addition to only chemisorption in the size range larger than 9. Absolute cross sections for the chemisorption, the H(OH) formation, and the demethanation processes were measured as functions of cluster size and collision energy. Optimized structures of bare copper cluster ions, reaction intermediates, and products were calculated by use of a hybrid method (B3LYP) consisting of the molecular orbital and the density functional methods. The origin of the size-dependent reactivity was explained as the structural change of cluster, two-dimensional to three-dimensional structures.

Unisized two-dimensional platinum clusters on silicon(111)-7x7 surface observed with scanning tunneling microscope.

Uni-sized platinum clusters (size range of 5-40) on a silicon(111)-7 x 7 surface were prepared by depositing size-selected platinum cluster ions on the silicon surface at the collision energy of 1.5 eV per atom at room temperature. The surface thus prepared was observed by means of a scanning tunneling microscope (STM) at the temperature of 77 K under an ambient pressure less than 5 x 10(-9) Pa. The STM images observed at different cluster sizes revealed that (1) the clusters are flattened and stuck to the surface with a chemical-bond akin to platinum silicide, (2) every platinum atom occupies preferentially the most reactive sites distributed within a diameter of approximately 2 nm on the silicon surface at a cluster size up to 20, and above this size, the diameter of the cluster increases with the size, and (3) the sticking probability of an incoming cluster ion on the surface increases with the cluster size and reaches nearly unity at a size larger than 20.

Collision energy transfer in collision of NH(4) (+)(NH(3))(n-1) (n=3-9) with ND(3).

An incorporation of ND(3) into protonated ammonia cluster ions NH(4)(+)(NH(3))(n-1) (n=3-9), together with a dissociation of the cluster ions, was observed in the collision of the cluster with ND(3) at collision energies ranging from 0.04 to 1.4 eV in the center-of-mass frame. The branching fractions of the cluster ion species produced in the reactions were obtained as a function of the collision energy. The branching fractions of the incorporation products were successfully explained in terms of the Rice-Ramsperger-Kassel (RRK) theory at collision energies lower than the binding energy of the cluster ion. In addition, the internal energy distributions of the parent cluster ions were determined, and found to be in good agreement with those predicted using the evaporative ensemble model. In incorporations at collision energies lower than the binding energy of the cluster ion, all of the collision energy was transferred to the internal energy of the cluster ions; subsequently, an evaporation of ammonia molecules occurred in an equilibrium process after a complete energy redistribution in the clusters. In contrast, at collision energies higher than the binding energy of the cluster ion, a release of an ammonia molecule from the incorporation products occurred in a nonequilibrium process. The transition from the complex mode to the direct mode in the incorporation was observed at collision energies approximately equal to the binding energy. On the other hand, the collision energy dependence of the cross sections for the dissociation and for a nonreactive collision were estimated by a RRK simulation in which the collision energy transfer was interpreted by using the classical hard-sphere collision model. A relationship between reactivity and reaction modes in the collision of NH(4)(+)(NH(3))(4) with ND(3) is discussed via a comparison of the experimental results with the RRK simulation.