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1.
Mol Genet Genomics ; 298(6): 1493-1503, 2023 Nov.
Article in English | MEDLINE | ID: mdl-37845373

ABSTRACT

Previous studies have observed relationships between immune cells and systemic lupus erythematosus (SLE), but their causal links remain undetermined. Based on the public available genome-wide association studies (GWAS) summary statistics, we conducted two-sample Mendelian randomization (MR) to evaluate the associations between 731 immune phenotypes and SLE pairs. Pairwise pleiotropy analysis was performed to identify pleiotropic genes for significant immunophenotype-SLE pairs. A comprehensive gene function analysis was undertaken to explore the mechanisms of immune cells in SLE. By using the instrumental variables extracted from GWAS data, we observed that increased levels of five immune phenotypes were causally associated with SLE risk (FDR < 0.05), that were CD20 on IgD+ CD38- naïve, BAFF-R on IgD+ CD38dim, CD39+ secreting Treg AC, CD14- CD16+ monocyte AC, and HLA DR on CD14+ monocyte. Pairwise gene-based analyses identified a total of 38 pleiotropic genes for 5 significant pairs identified and gene set enrichment analysis revealed the involvement of the identified pleiotropic genes in complex pathways (i.e., systemic lupus erythematosus, an integral component of luminal side of endoplasmic reticulum membrane, C-type lectin receptor signaling pathway and regulation of hormone secretion). This study demonstrates that the immune response influences the progression of SLE in a complex pattern. These findings greatly improve our understanding of the interaction between immune response and SLE risk and also aid in the design of therapeutic strategies from an immunological perspective.


Subject(s)
Lupus Erythematosus, Systemic , Mendelian Randomization Analysis , Humans , Genome-Wide Association Study , Phenotype , Signal Transduction/genetics , Lupus Erythematosus, Systemic/genetics , Polymorphism, Single Nucleotide
2.
Leuk Res ; 41: 62-70, 2016 Feb.
Article in English | MEDLINE | ID: mdl-26725775

ABSTRACT

MicroRNA-149* (miRNA-149*) functions as an oncogenic regulator in human melanoma. However, the effect of miRNA-149* on T-cell acute lymphoblastic leukemia (T-ALL) is unclear. Here we aimed to analyze the effects of miRNA-149* on in vitro T-ALL cells and to uncover the target for miRNA-149* in these cells. The miRNA-149* level was determined in multiple cell lines and bone marrow cells derived from patients with T-ALL, B acute lymphoblastic leukemia (B-ALL), acute myelocytic leukemia (AML), and healthy donors. We found that miRNA-149* was highly expressed in T-ALL cell lines and T-ALL patients' bone marrow samples. JunB was identified as a direct target of miR-149*. miRNA-149* mimics downregulated JunB levels in Molt-4 and Jurkat cells, while miRNA-149* inhibitors dramatically upregulated JunB expression in these cells. miRNA-149* mimics promoted proliferation, decreased the proportion of cells in G1 phase, and reduced cell apoptosis in T-ALL cells, while miRNA-149* inhibitors prevented these effects. miRNA-149* mimics downregulated p21 and upregulated cyclinD1, 4EBP1, and p70s6k in Molt-4 and Jurkat cells. Again, inhibitors prevented these effects. Our findings demonstrate that miRNA-149* may serve as an oncogenic regulator in T-ALL by negatively regulating JunB.


Subject(s)
Gene Expression Regulation, Neoplastic/genetics , MicroRNAs/genetics , Precursor T-Cell Lymphoblastic Leukemia-Lymphoma/genetics , Transcription Factors/genetics , Apoptosis/genetics , Apoptosis/immunology , Blotting, Western , Cell Proliferation , Gene Expression Regulation, Neoplastic/immunology , Humans , MicroRNAs/immunology , Polymerase Chain Reaction , Precursor T-Cell Lymphoblastic Leukemia-Lymphoma/immunology , Precursor T-Cell Lymphoblastic Leukemia-Lymphoma/pathology , Transcription Factors/biosynthesis , Transcription Factors/immunology
3.
Asian Pac J Cancer Prev ; 15(21): 9265-70, 2014.
Article in English | MEDLINE | ID: mdl-25422210

ABSTRACT

BACKGROUND: The aim of this study was to investigate differences of miRNA-34a expression in benign and malignant colorectal lesions. MATERIALS AND METHODS: Samples of cancer, paraneoplastic tissues and polyps were selected and total RNA was extracted by conventional methods for real-time PCR to detect the miRNA- 34a expression. In addition, the LOVO colorectal cancer cell line was cultured, treated with the demethylating agent 5-azacytidine and screened for differentially expressed miRNA-34a. RESULTS: After the drug treatment, the miRNA-34a expression of colorectal cancer cell line LOVO was increased and real-time PCR showed that levels of expression in both cell line and colorectal cancer tissues were low, as compared to paraneoplastic tissue (p<0.05). Polyps tissues had significantly higher expression than paraneoplastic and colorectal cancer samples (p<0.05). CONCLUSIONS: miRNA-34a-5p may play a role as a tumor suppressor gene in colorectal cancer, with involvement of DNA methylation.


Subject(s)
Adenocarcinoma/genetics , Adenoma/genetics , Colonic Polyps/genetics , Colorectal Neoplasms/genetics , MicroRNAs/genetics , Adenocarcinoma/chemistry , Adenoma/chemistry , Aged , Cell Line, Tumor , Colon/chemistry , Colonic Polyps/chemistry , Colorectal Neoplasms/chemistry , Colorectal Neoplasms/pathology , DNA Methylation , Female , Humans , Male , MicroRNAs/analysis , Middle Aged , RNA, Messenger/analysis , Rectum/chemistry
4.
J Food Prot ; 73(3): 483-7, 2010 Mar.
Article in English | MEDLINE | ID: mdl-20202333

ABSTRACT

Electrolyzed oxidizing water (EOW) has been regarded as a potential environmentally friendly broad spectrum microbial decontaminant. EOW with a pH of 3.0 and oxidation reduction potential of 1,079.0 mV were generated by the electrolysis of a dilute NaCl solution (20 mM) in an electrochemical cell. The effects of EOW, 1% NaClO solution, and alkaline electrolyzed water on controlling microbial growth, germination ratio, and enrichment of gamma-aminobutyric acid in germinated brown rice (GBR) were evaluated in this study. Results show that EOW was the most effective at inhibiting microbial growth during germination. Rinsing the rice grains with EOW at 12-h intervals resulted in aerobic plate count reductions of 4.82 log CFU/g, while soaking resulted in bacterial count reductions of 5.38 log CFU/g after 72 h of germination. Moreover, EOW significantly enriched gamma-aminobutyric acid content in GBR (P < 0.05); content was increased 1.6 times in grain rinsed with EOW and 1.8 times in grain soaked in EOW. The findings indicate that EOW is a feasible disinfectant for industrial GBR production.


Subject(s)
Food Contamination/prevention & control , Food Handling/methods , Oryza/microbiology , Water/pharmacology , gamma-Aminobutyric Acid/analysis , Colony Count, Microbial , Consumer Product Safety , Electrolysis , Food Microbiology , Germination , Humans , Hydrogen-Ion Concentration , Oxidation-Reduction , Treatment Outcome , Water/chemistry , Water Microbiology
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