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1.
PLoS One ; 19(5): e0302981, 2024.
Article in English | MEDLINE | ID: mdl-38709740

ABSTRACT

An understanding of species-environmental relationships is invaluable for effective conservation and management under anthropogenic climate change, especially for biodiversity hotspots such as riparian habitats. Species distribution models (SDMs) assess present species-environmental relationships which can project potential suitable environments through space and time. An understanding of environmental factors associated with distributions can guide conservation management strategies under a changing climate. We generated 260 ensemble SDMs for five species of Thamnophis gartersnakes (n = 347)-an important riparian predator guild-in a semiarid and biogeographically diverse region under impact from climate change (Arizona, United States). We modeled present species-environmental relationships and projected changes to suitable environment under 12 future climate scenarios per species, including the most and least optimistic greenhouse gas emission pathways, through 2100. We found that Thamnophis likely advanced northward since the turn of the 20th century and overwinter temperature and seasonal precipitation best explained present distributions. Future ranges of suitable environment for Thamnophis are projected to decrease by ca. -37.1% on average. We found that species already threatened with extinction or those with warm trailing-edge populations likely face the greatest loss of suitable environment, including near or complete loss of suitable environment. Future climate scenarios suggest an upward advance of suitable environment around montane areas for some low to mid-elevation species, which may create pressures to ascend. The most suitable environmental areas projected here can be used to identify potential safe zones to prioritize conservation refuges, including applicable critical habitat designations. By bounding the climate pathway extremes to, we reduce SDM uncertainties and provide valuable information to help conservation practitioners mitigate climate-induced threats to species. Implementing informed conservation actions is paramount for sustaining biodiversity in important aridland riparian systems as the climate warms and dries.


Subject(s)
Climate Change , Ecosystem , Animals , Biodiversity , Conservation of Natural Resources/methods , Predatory Behavior , Models, Theoretical
2.
Ecol Evol ; 14(4): e11259, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38628912

ABSTRACT

Connectivity is essential for the maintenance of genetic diversity and stability of wildlife populations. Drought and changing precipitation regimes have caused natural aquatic amphibian breeding habitats to disappear or become isolated and have led to the replacement of natural surface water with artificial livestock water tanks. Terrestrial movement is the only means of responding to aquatic threats in arid landscapes and to allow population connectivity. Aridity may present an impenetrable barrier in hydrologically fragmented environments. We used a facultatively paedomorphic and federally endangered salamander to assess the challenges of movement across arid working lands. Sonoran tiger salamanders (Ambystoma mavortium stebbinsi) are endemic to the San Rafael Valley of southeastern Arizona, United States of America, where they depend on livestock water tanks as breeding habitat. The ecology of this species' metamorphs outside of stock tanks is virtually unknown. To assess survival on the landscape during terrestrial movement we used radio-transmitters to track 78 adult metamorphosed salamanders over 2 years. Sonoran tiger salamanders moved up to 1 km from the tank edge, and average distances moved of over 400 m were higher than most Ambystoma species. However, during the study period, none reached neighboring stock tanks. We found high mortality due to predation and desiccation. Individuals that dispersed to terrestrial habitat in summer survived longer than individuals that dispersed in spring. High mortality suggests terrestrial movement is exceptionally risky and may contribute to isolated subpopulations and elevated levels of inbreeding. Conservation actions that improve and maintain artificial aquatic habitats as well as increase connectivity may improve long-term management for pond-breeding amphibians in arid regions.

3.
PLoS One ; 19(2): e0297993, 2024.
Article in English | MEDLINE | ID: mdl-38346052

ABSTRACT

Habitat loss and degradation are leading drivers of the widespread decline in wildlife populations, and understanding how wildlife perceive and navigate their environment is useful for predicting responses to future landscape changes. Small mammals play an important role in their environments, however, many species are threatened by rapid environmental change. The Harris' antelope squirrel (Ammospermophilus harrisii) is endemic to the Sonoran Desert but faces multiple landscape changes due to anthropogenic activity. We fitted A. harrisii with radio collars to quantify resource selection and better understand how further environmental change may affect squirrels. Squirrels exhibited differential selection depending on behavior and scale. When selecting for microsites suitable for burrows and alarm calling (i.e., fourth-order selection), squirrels selected for both cacti and shrub portions of the habitat. Overall habitat selection within home ranges (i.e., third-order selection) showed selection against shrub patches, however, suggesting that further shrub encroachment may have consequences for A. harrisii behavior and distribution.


Subject(s)
Animals, Wild , Ecosystem , Animals , Mammals/physiology , Sciuridae
4.
Mol Ecol ; 32(18): 5156-5169, 2023 09.
Article in English | MEDLINE | ID: mdl-37528604

ABSTRACT

Phylogeographic studies uncover hidden pathways of divergence and inform conservation. Brown bears (Ursus arctos) have one of the broadest distributions of all land mammals, ranging from Eurasia to North America, and are an important model for evolutionary studies. Although several whole genomes were available for individuals from North America, Europe and Asia, limited whole-genome data were available from Central Asia, including the highly imperilled brown bears in the Gobi Desert. To fill this knowledge gap, we sequenced whole genomes from nine Asian brown bears from the Gobi Desert of Mongolia, Northern Mongolia and the Himalayas of Pakistan. We combined these data with published brown bear sequences from Europe, Asia and North America, as well as other bear species. Our goals were to determine the evolutionary relationships among brown bear populations worldwide, their genetic diversity and their historical demography. Our analyses revealed five major lineages of brown bears based on a filtered set of 684,081 single nucleotide polymorphisms. We found distinct evolutionary lineages of brown bears in the Gobi, Himalayas, northern Mongolia, Europe and North America. The lowest level of genetic diversity and the highest level of inbreeding were found in Pakistan, the Gobi Desert and Central Italy. Furthermore, the effective population size (Ne ) for all brown bears decreased over the last 70,000 years. Our results confirm the genetic distinctiveness and ancient lineage of brown bear subspecies in the Gobi Desert of Mongolia and the Himalayas of Pakistan and highlight their importance for conservation.


Subject(s)
Ursidae , Humans , Animals , Ursidae/genetics , Phylogeny , DNA, Mitochondrial/genetics , Biological Evolution , Demography
5.
PeerJ ; 11: e15563, 2023.
Article in English | MEDLINE | ID: mdl-37361036

ABSTRACT

Anthropogenic climate change and ecosystem disturbances can detrimentally affect habitats and species. Areas with concentrated biodiversity, such as aridland riparian zones, often yield the greatest number of vulnerable species. A better understanding of ecological and environmental relationships can guide more effective conservation strategies. We used both visual transects and external (tape) radio telemetry to study the behavioral and spatial ecology of black-necked gartersnakes (Thamnophis cyrtopsis; n = 81)-a dietary generalist yet aquatic habitat specialist-in a heterogenous aridland riparian zone of lower Sabino Canyon, Tucson, Arizona, between 2018 and 2021. Our objectives were to (1) understand how extrinsic conditions influence population ecology dynamics, including immediately prior to and after major disturbances and environmental extremes; (2) analyze behavioral activity and microhabitat usage in relation to environmental factors; and (3) assess the efficacy of a less-invasive telemetry strategy. Between late spring 2020 and early summer 2021, ecosystem disturbances included near-record heat and drought, wildfire, and low overwinter precipitation. Many aquatic habitats either completely dried or were spatially disjunct; gartersnake prey species were noticeably sparse. Extreme drought rapidly shifted to excessive flooding during the 2021 monsoon that brought above-average streamflow magnitude and duration. Between 2019 and 2021, we observed a dramatic decline in T. cyrtopsis; odds of detection reduced by 92.8% (CI [56.0-99.1%]). Strong spatiotemporal links relative to the extent and timing of available surface water appear important. Prior to the onset of monsoonal stream recharge in early summer, shallow and drying aquatic habitats are used as parturition sites and foraging grounds; all age classes took advantage to corral fishes trapped in isolated and shrinking pools. Ambient conditions had varying effects on gartersnake behaviors. Variation in microhabitat assemblages occurred with distance from water, activity level, and developmental age class. Interestingly, associations remained consistent across seasons and years, which suggests a reliance on heterogenous habitat structure. Sampling techniques complemented each other, however, bioclimatic parameters rendered limitations and should be considered in methodological decisions. Overall, disadvantageous responses to major disturbances and climatic extremes by a presumably adaptable generalist like T. cyrtopsis are concerning. Insights from long-term monitoring of responses by common yet environmentally sensitive species such as T. cyrtopsis may serve to more broadly highlight demographic challenges that other taxa with similar semi-aquatic life histories may face in changing systems. Such information could inform more effective conservation management strategies in warming and drying ecosystems.


Subject(s)
Biodiversity , Ecosystem , Animals , Rivers/chemistry , Fishes , Water
6.
PLoS One ; 18(2): e0271083, 2023.
Article in English | MEDLINE | ID: mdl-36795641

ABSTRACT

Substitute species can inform management strategies without exposing endangered species to unacceptable risk. Furthermore, experimental approaches may help to identify the causes of translocation failures, improving the chances of success. We used a surrogate subspecies, Tamiasciurus fremonti fremonti to test different translocation techniques to inform on potential management actions with regards to the endangered Mt. Graham red squirrel (Tamiasciurus fremonti grahamensis). Individuals of both subspecies defend year-round territories in similar mixed conifer forests at elevations between 2650-2750 m, where they store cones to survive over winter. We fitted VHF radio collars to 54 animals, and we monitored their survival and movements until individuals settled on a new territory. We considered the effect of season, translocation technique (soft or hard release), and body mass on survival, distance moved after release, and time to settlement of translocated animals. Survival probability averaged 0.48 after 60 days from the translocation event and was not affected by season or translocation technique. 54% of the mortality was caused by predation. Distance moved and number of days to settlement varied with season, where winter was characterized by shorter distances (average of 364 m in winter versus 1752 m in fall) and a smaller number of days (6 in winter versus 23 in fall). The data emphasized on the potential of substitute species to provide valuable information for possible outcomes of management strategies to closely related endangered species.


Subject(s)
Endangered Species , Tracheophyta , Animals , Forests , Territoriality , Sciuridae
7.
Zoo Biol ; 42(3): 429-439, 2023.
Article in English | MEDLINE | ID: mdl-36536594

ABSTRACT

Zoo-based (ex situ) conservation breeding programs provide invaluable opportunities to uncover enigmatic behaviors and traits of focal species under managed care, which can support research and conservation management efforts. A suite of factors and a limited range have yielded population declines in the threatened narrow-headed gartersnake (Thamnophis rufipunctatus). Better understanding its cryptic ecology and life history (e.g., reproductive ecology) offers conservation benefits. We analyzed data on courtship behavior, parity and litter size, offspring size, and neonatal growth from an ex situ T. rufipunctatus population at the Phoenix Zoo from 2009 to 2018. Courtship behavior and parturition phenology are likely linked with the North American monsoon season, yet the courtship window may be wider than realized. We document the first instances of interannual iteroparity and multigenerational rearing of successful breeders at the ex situ level. Litter sizes varied but were relative to maternal body mass, suggesting that fecundity may be driven by intrinsic condition (e.g., age and size) of breeding females. Mean offspring body masses were equivalent between sexes, and neonate growth trends were quadratic during their first 9 months. Sexual dimorphism became apparent around 4-5 months age. Much of these data are novel for T. rufipunctatus and provide insight into their reproductive ecology. Phenology of reproductive ecology and body size metrics can guide field surveillance, age estimations, and population ecology monitoring, as well as inform ex situ adaptive management practices. Strategies spanning the ex situ-in situ spectrum are applicable to other imperiled taxa to better inform conservation management decisions.


Subject(s)
Colubridae , Endangered Species , Female , Animals , Conservation of Natural Resources , Animals, Zoo , Reproduction
8.
Zoo Biol ; 41(4): 346-353, 2022 Jul.
Article in English | MEDLINE | ID: mdl-35037290

ABSTRACT

Mimicking natural parameters and complexities in zoo conservation breeding programs can facilitate natural physiological and behavioral traits, which in turn can inform more effective species reintroduction efforts. To curtail population declines of threatened narrow-headed gartersnakes (Thamnophis rufipunctatus), the Arizona Center for Nature Conservation/Phoenix Zoo partnered with a multiagency conservation working group to develop an ex situ propagation-for-release program. Initially, Zoo staff followed common snake husbandry protocols of manually inducing brumation (i.e., winter dormancy). Copulation was observed during the first few years, but no births resulted. Also, some older individuals developed post-brumation health abnormalities, prompting a strategic reassessment. To facilitate propagation and improve health, Zoo staff applied ecological knowledge of T. rufipunctatus and an adaptive management strategy to implement key parameters for success: sociality, refugia, breeding and foraging behaviors, and natural brumation. Zoo staff developed a large multisnake enclosure that mimicked natural ecological and habitat complexities including a hibernaculum to stimulate natural brumation. Gartersnakes were left mostly unimpeded to conduct natural behaviors across seasons in the enriched environment. We referenced change in body mass after ten brumation periods as a proxy for health. Under natural brumation, gartersnakes did not lose body mass, and this shift resulted in fully ex situ parturition events-the first for this imperiled species. We highlight the efficacy of adaptive management and incorporation of natural parameters and environmental complexities into conservation breeding programs. These actions can improve the health and success of animals under managed care-processes applicable to a range of taxa targeted for conservation translocations.


Subject(s)
Colubridae , Animals , Animals, Zoo/physiology , Conservation of Natural Resources/methods , Ecosystem , Reproduction/physiology
9.
PLoS One ; 16(11): e0259260, 2021.
Article in English | MEDLINE | ID: mdl-34739496

ABSTRACT

Interspecific interactions among mesocarnivores can influence community dynamics and resource partitioning. Insights into these interactions can enhance understanding of local ecological processes that have impacts on pathogen transmission, such as the rabies lyssavirus. Host species ecology can provide an important baseline for disease management strategies especially in biologically diverse ecosystems and heterogeneous landscapes. We used a mesocarnivore guild native to the southwestern United States, a regional rabies hotspot, that are prone to rabies outbreaks as our study system. Gray foxes (Urocyon cinereoargenteus), striped skunks (Mephitis mephitis), bobcats (Lynx rufus), and coyotes (Canis latrans) share large portions of their geographic ranges and can compete for resources, occupy similar niches, and influence population dynamics of each other. We deployed 80 cameras across two mountain ranges in Arizona, stratified by vegetation type. We used two-stage modeling to gain insight into species occurrence and co-occurrence patterns. There was strong evidence for the effects of elevation, season, and temperature impacting detection probability of all four species, with understory height and canopy cover also influencing gray foxes and skunks. For all four mesocarnivores, a second stage multi-species co-occurrence model better explained patterns of detection than the single-species occurrence model. These four species are influencing the space use of each other and are likely competing for resources seasonally. We did not observe spatial partitioning between these competitors, likely due to an abundance of cover and food resources in the biologically diverse system we studied. From our results we can draw inferences on community dynamics to inform rabies management in a regional hotspot. Understanding environmental factors in disease hotspots can provide useful information to develop more reliable early-warning systems for viral outbreaks. We recommend that disease management focus on delivering oral vaccine baits onto the landscape when natural food resources are less abundant, specifically during the two drier seasons in Arizona (pre-monsoon spring and autumn) to maximize intake by all mesocarnivores.


Subject(s)
Rabies/prevention & control , Rabies/transmission , Animals , Animals, Wild/virology , Arizona , Coyotes/virology , Disease Management , Ecosystem , Feeding Behavior , Foxes/virology , Lynx/virology , Mephitidae/virology , Rabies Vaccines/administration & dosage , Rabies virus/pathogenicity
10.
Biology (Basel) ; 10(10)2021 Oct 15.
Article in English | MEDLINE | ID: mdl-34681145

ABSTRACT

The trade of non-native pets, especially of non-domesticated and exotic animals, and their subsequent release and establishment of populations is one of the major pathways of introduction for invasive alien reptiles, amphibia, birds and mammals. Here, we use a group of arboreal mammals, tree squirrels of the genus Callosciurus, as a well-documented case study, reviewing the pathways of introduction, the current areas of non-native distribution, the rate of establishment success and the challenge and legal importance of species identification. We further illustrate the importance of early detection and effective monitoring methods and plans. Next, we document how they interfere with native species, their risk of acting as vectors for emerging infectious diseases and their potential role in maintaining parasitic infections that can affect human health. We conclude by reviewing the current management, or the lack of it, and highlight the diverse biological, social, political and economic reasons that make control/eradication of these charismatic species difficult or even impractical in most countries. However, reviewing the only two successful eradications of the IAS, we highlight the need to acknowledge the public opinion and the importance of communication, transparency and the engagement of a diversity of stakeholders to create a consensus about the actions to undertake.

11.
PLoS One ; 16(7): e0241099, 2021.
Article in English | MEDLINE | ID: mdl-34288903

ABSTRACT

Population decline and extinction risk of river dolphins are primarily associated with flow alteration. Previous studies predominantly highlighted maintenance of adequate flow for low water seasons when habitats contract and the risk of local extinction escalates. Although river dolphins are sensitive to reduction in river flow, no studies quantify the relationships between flow and ecology of river dolphins to mitigate the potential adverse impacts of flow alteration. We quantify the relationships between flow and the ecology of river cetaceans concerning Ganges River dolphins (GRD; Platanista gangetica gangetica) usable area availability (AWS) for the low water season at wider flows (50-575 m3/s) at finer spatial and temporal scales. This study reveals that distribution of area usable to GRD is highly regulated by the adequate flow and river attributes (velocity and depth) interactions that likely offer energetically efficient modes of locomotion to GRD, suggesting the hydro-physical environment as a major determinant of river dolphin distribution and abundance. Flow and AWS relationships indicate that the flow during the dry season negatively contributed to AWS, whereas that of pre-monsoon maximized the AWS, suggesting that modifying flow regimes does alter in-stream habitats at varying spatial scales and may influence life-history strategies. Substantial fragmentation in suitable pool availability and loss of longitudinal connectivity exhibited by dry season flow suggested a higher risk of adverse biological effects during the dry season, which may reduce population viability by reducing survivorship and reproduction failure. Owing to river dolphins' dependence on the attribute of freshwater flow, they can be expected to be more affected by flow regulations as interactive effects. Considering the seasonal effects and changes in the availability of usable areas by flow alteration, adopting effective habitat retention plans by water-based development projects appears critical to avoid further ecological risks in aquatic species conservation. Identifying priority riverscapes for river cetaceans and prioritizing investment opportunities is an essential first step towards effective riverine cetacean conservation.


Subject(s)
Dolphins , Ecosystem , Rivers , Animals , Conservation of Natural Resources , Seasons
12.
Sci Rep ; 10(1): 22348, 2020 12 18.
Article in English | MEDLINE | ID: mdl-33339890

ABSTRACT

Many environmental flow (e-flow) studies and applications have predominantly used state-(i.e., at a single time point) and rate-(i.e., temporal change) based demographic characteristics of species representing lower trophic levels (e.g., fish communities) to build flow-ecology relationships, rather than using a process that incorporates population dynamics. Recent studies have revealed the importance of incorporating data on species traits when building flow-ecology relationships. The effects of flow on keystone megafauna species (i.e., body mass ≥ 30 kg) reverberate through entire food webs; however, the relationships between flow and these species are not well understood, limiting the scope of the relationships used in flow management. Here, we fill this gap by incorporating the habitat selection traits at different flows of a freshwater apex predator, Ganges River dolphin (GRD, Platanista gangetica gangetica), which plays a significant role in maintaining the structure, functions and integrity of the aquatic ecosystem. Using temporally and spatially measured GRD habitat selection traits, we quantified flow-ecology responses in the Karnali River of Nepal during the low-flow season when habitat was heavily reduced and water demand was highest. We define ecological responses as suitable habitat templates with enough usable surface area to support GRD fitness by improving reproduction and survival. We measured the available and occupied habitats to develop flow-ecology responses. Variation in flow resulted in substantial differences in the ecological response across time and space, suggesting that aquatic species adjusted in a variety of habitats to support their life histories and maintain viable populations. The limited availability of suitable habitats combined with uninformed water regulations by humans likely places GRDs under severe physiological stress during low-water seasons (i.e., January-April), suggesting that  reduced flows contribute to the process of endangering and extirpating highly sensitive endemic aquatic biodiversity. Our study reveals that ad hoc or experience-based flow management is no longer tenable to maintain the integrity and functionality of aquatic ecosystems. We stress that quantifying the flow-ecology relationships of foundational species, particularly megafauna, in response to flow variation is crucial for monitoring the effects of water alterations and determining the minimum flows needed for maintaining healthy and functional freshwater ecosystems in the Anthropocene.


Subject(s)
Conservation of Natural Resources , Dolphins/physiology , Ecosystem , Hydrobiology , Animals , Fishes , Food Chain , Fresh Water , Humans , Nepal , Population Dynamics , Rivers , Seasons
13.
PLoS One ; 15(11): e0242104, 2020.
Article in English | MEDLINE | ID: mdl-33166355

ABSTRACT

Resources that an individual selects contrasted against what is available can provide valuable information regarding species-specific behavior and ecological relationships. Small mammals represent excellent study organisms to assess such relationships. Isolated populations that exist on the edge of a species' distribution often exhibit behavioral adaptations to the extremes experienced by a species and can provide meaningful insight into the resource requirements of the species. We deployed radio transmitters in a peripheral population of the long-tailed vole (Microtus longicaudus) during the mating season. We developed models of resource selection at multiple scales (within home range and patch). We found voles generally selected areas close to water and roads and consisting of high understory vegetation primarily composed of grasses. Resource selection varied between sexes suggesting different resource needs during the breeding season. The differential resource needs of voles might be a result of the energetic requirements for reproduction and are representative of a promiscuous or polygynous mating system.


Subject(s)
Animal Distribution , Arvicolinae/physiology , Reproduction , Animals , Endangered Species , Female , Male , Sex Factors , Telemetry/methods
14.
Sci Rep ; 10(1): 18798, 2020 11 02.
Article in English | MEDLINE | ID: mdl-33139770

ABSTRACT

Here we quantify the effects of artisanal fisheries on the ecology of a small cetacean, the Ganges River dolphin (Platanista gangetica gangetica, GRD), in a large river system of Nepal. We examine the size-classes of fisheries' catches, behavioural changes in GRD in response to fishing activities, and diel overlap between GRD and fishing activity. We observed high human exploitation rates (> 60% of the total catch per effort) of GRD-preferred prey sizes, indicating risks of high resource competition and dietary overlap, especially during the low water season when resource availability is reduced. Competitive interactions in the feeding niches during the low water season, plus temporal overlap between the peak exploitation and critical life-history events (e.g., reproduction), likely have ecological consequences. Furthermore, we detected 48% (95% CI 43-52%) increase in the chance of behavioural changes among dolphins exposed to anthropopressure (fishing activity), risking social behaviour impairment in exposed dolphins. The higher diel overlap and increased diel coefficient as the surveys progressed towards the monsoon season suggest temporal shifts in GRD socio-behavioural states and seasonal effects on resource partitioning, respectively. This work identifies drivers of small cetaceans-fisheries interactions and their consequences, and can be used to help reduce biologically significant fishing impacts on small cetaceans. Mitigation strategies, together with river sanctuary and distanced-based approaches, should be urgently included in a framework of ecosystem-based management.


Subject(s)
Behavior, Animal/physiology , Conservation of Natural Resources , Dolphins/physiology , Dolphins/psychology , Feeding Behavior/physiology , Fisheries , Hydrobiology , Rivers , Seasons , Animals , Humans , Nepal , Reproduction , Social Behavior
15.
Ecol Evol ; 10(6): 3138-3148, 2020 Mar.
Article in English | MEDLINE | ID: mdl-32211183

ABSTRACT

The Ganges-Brahmaputra-Meghna and Karnaphuli (GBMK) River Basin in Nepal, India, and Bangladesh is among the world's most biodiverse river basins. However, human-induced habitat modification processes threaten the ecological structure of this river basin. Among the GBMK's diverse flora and fauna of this freshwater ecosystem, the endemic Ganges River dolphin (Platanista gangetica gangetica; GRD) is one of the most charismatic species in this freshwater ecosystem. Though a >50% population size reduction has occurred since 1957, researchers and decision-makers often overlook the persistence (or evolutionary potential) of this species in the highly fragmented GBMK. We define the evolutionary potential as the ability of species/populations to adapt in a changing environment by maintaining their genetic diversity. Here, we review how evolutionary trap mechanisms affect the dynamics and viability of the GRD (hereafter Ganges dolphin) populations after rapid declines in their population size and distribution. We detected six potential trap mechanisms that might affect the Ganges dolphin populations discretely or in combination: (a) habitat modification; (b) occurrence of finite and geographically restricted local populations; (c) ratio of effective to estimate population size; (d) increasing risk of inbreeding depression in genetically isolated groups; (e) at-risk behavioral attributes; and (f) direct fisheries-dolphin interactions. Because evolutionary traps appear most significant during low water season, they adversely affect demographic parameters, which reduce evolutionary potential. These traps have already caused local extirpation events; therefore, we recommend translocation among populations, including restoring and preserving essential habitats as immediate conservation strategies. Integrative evolutionary potential information based on demographic, genetic, and environmental data is still lacking. Thus, we identify gaps in the knowledge and suggest integrative approaches to understand the future of Ganges dolphins in South Asian waterways.

16.
Ecol Evol ; 9(7): 4065-4077, 2019 Apr.
Article in English | MEDLINE | ID: mdl-31015988

ABSTRACT

Niche overlap between native species and ecologically similar invaders can lead to competitive exclusion of threatened native species, but if two such species also co-occur naturally elsewhere, interactions between native and introduced populations may mirror coevolved niche partitioning that reduces competition and promotes coexistence.A single, insular population of Fremont's squirrel (Tamiasciurus fremonti) the Mount Graham red squirrel (MGRS; T. f. grahamensis) in the Pinaleño Mountains, Arizona, USA, is critically endangered and resource competition with introduced Abert's squirrels (Sciurus aberti) may threaten its long-term persistence. The species are naturally synoptic in other mountain sites, and both consume diets comprised primarily of conifer seeds and fungi.We conducted experimental removals of introduced Abert's squirrels and used stable isotope analysis of diets before and after removals, and of diets in naturally syntopic populations to test the hypothesis that dietary niche partitioning can facilitate coexistence between native and introduced species. We also developed a novel approach to determine the influence of fluctuating food availability on carbon enrichment in consumers.Mount Graham red squirrels and introduced Abert's squirrels partitioned the dietary niche similarly to naturally syntopic populations. Removals had no apparent effect. Diet of MGRS was more closely linked to availability of resources than to presence of Abert's squirrels.Flexible dietary niche of introduced Abert's squirrels may have allowed them to exploit a resource opportunity in syntopy with MGRS. Variable food production of MGRS habitat may intensify competition in poor years, and territorial defense against non-native Abert's squirrels likely imposes fitness costs on individual MGRS. Similarity in our model species' diets may make MGRS more vulnerable to competition if climate change eliminates the advantages of larder-hoarding. Where introduced populations of ecologically similar species are better adapted to changing conditions, they may ultimately replace southern peripheral populations of native species.

17.
Ecol Evol ; 9(1): 307-317, 2019 Jan.
Article in English | MEDLINE | ID: mdl-30680115

ABSTRACT

Shrub encroachment into arid grasslands has been associated with reduced grass abundance, increased soil erosion, and local declines in biodiversity. Livestock overgrazing and the associated reduction of fine fuels has been a primary driver of shrub encroachment in the southwestern United States, but shrublands continue to persist despite livestock removal and grassland restoration efforts. We hypothesized that an herbivory feedback from native mammals may contribute to continued suppression of grasses after the removal of livestock. Our herbivore exclusion experiment in southeastern Arizona included five treatment levels and allowed access to native mammals based on their relative body size, separating the effects of rodents, lagomorphs, and mule deer. We included two control treatments and replicated each treatment 10 times (n = 50). We introduced uniform divisions of lawn sod (Cynodon dactylon) into each exclosure for 24-hr periods prior to (n = 2) and following (n = 2) the monsoon rains and used motion-activated cameras to document herbivore visitations. In the pre-monsoon trials, treatments that allowed lagomorph access had less sod biomass relative to other treatments (p < 0.001), averaging 44% (SD 36%) and 29% (SD 45%) remaining biomass after the 24-hr trial periods. Following the onset of monsoons, differences in remaining biomass among treatments disappeared. Desert cottontails (Sylvilagus audubonii) were detected more frequently than any of the other 11 herbivore species present at the site, accounting for 83% of detections during the pre-monsoon trials. Significantly more (p < 0.001) desert cottontails were detected during the pre-monsoon trials (2,077) compared to the post-monsoon trials (174), which coincided with biomass removal from lagomorph accessible treatments. We conclude that desert cottontails are significant consumers of herbaceous vegetation in shrub-encroached arid grasslands and they, along with other native herbivores, may act as a biotic feedback contributing to the competitive advantage and persistence of shrubs.

18.
Mol Phylogenet Evol ; 131: 149-163, 2019 02.
Article in English | MEDLINE | ID: mdl-30468940

ABSTRACT

White-nosed coatis (Nasua narica) are widely distributed throughout North, Central, and South America, but the patterns of temporal and spatial diversification that have contributed to this distribution are unknown. In addition, the biogeographic history of procyonid species in the Americas remains contentious. Using sequences from three mitochondrial loci (Cytochrome b, NAHD5 and 16S rRNA; 2201 bp) and genotypes from 11 microsatellite loci, we analyzed genetic diversity to determine phylogeographic patterns, genetic structure, divergence times, and gene flow among Nasua narica populations throughout the majority of the species' range. We also estimated the ancestral geographic range of N. narica and other procyonid species. We found a high degree of genetic structure and divergence among populations that conform to five evolutionarily significant units. The most southerly distributed population (Panama) branched off much earlier (∼3.8 million years ago) than the northern populations (<1.2 million years ago). Estimated gene flow among populations was low and mostly northwards and westwards. The phylogeographic patterns within N. narica are associated with geographic barriers and habitat shifts likely caused by Pliocene-Pleistocene climate oscillations. Significantly, our findings suggest the dispersal of N. narica was south-to-north beginning in the Pliocene, not in the opposite direction during the Pleistocene as suggested by the fossil record, and that the most recent common ancestor for coati species was most likely distributed in South or Central America six million years ago. Our study implies the possibility that the diversification of Nasua species, and other extant procyonid lineages, may have occurred in South America.


Subject(s)
Genetic Variation , Phylogeography , Procyonidae/classification , Procyonidae/genetics , Animals , Base Sequence , Bayes Theorem , DNA, Mitochondrial/genetics , Gene Flow , Genetics, Population , Genotype , Microsatellite Repeats/genetics , North America , Phylogeny , South America , Time Factors
19.
Zootaxa ; 4522(1): 1-216, 2018 Nov 18.
Article in English | MEDLINE | ID: mdl-30486139

ABSTRACT

The Korean Peninsula and its associated Pacific islands have a distinctive, yet poorly studied mammalian fauna. Korea was a land of invasions and wars for many centuries. The loss of large mammals per unit area that has occurred in Korea may have been greater than in any other country. The peninsula has a depauperate rodent community. The forests are mostly harvested, replaced by intensive agriculture. Unfortunately, the dissemination of information about the mammals of Korea and their taxonomy has been limited because most publications were written in Japanese or Korean. We provide an updated checklist of all the species of Korean mammals, including a review of their taxonomy, distribution, and conservation status based on information extracted from international museum collections, local survey databases (Wildlife Survey and National Nature-Environmental Survey, South Korea) and a literature review. We identify 84 species of terrestrial mammals and 43 species of marine mammals that occur, or once occurred, in Korea. Due to previous, erroneous identifications, we delisted three soricids, two vespertilionids, one phocid, one sciurid and one murid. In total, we confirm the presence in Korea of 127 species of mammals distributed in eight Orders and 32 Families. We provide dichotomous keys for the identification of all the Korean species of mammals together with updated distribution maps.


Subject(s)
Animal Distribution , Mammals , Animals , Animals, Wild , Pacific Islands , Republic of Korea
20.
Ecol Evol ; 7(1): 58-72, 2017 Jan.
Article in English | MEDLINE | ID: mdl-28070275

ABSTRACT

Natal dispersal outcomes are an interplay between environmental conditions and individual phenotypes. Peripheral, isolated populations may experience altered environmental conditions and natal dispersal patterns that differ from populations in contiguous landscapes. We document nonphilopatric, sex-biased natal dispersal in an endangered small mammal, the Mt. Graham red squirrel (Tamiasciurus hudsonicus grahamensis), restricted to a single mountain. Other North American red squirrel populations are shown to have sex-unbiased, philopatric natal dispersal. We ask what environmental and intrinsic factors may be driving this atypical natal dispersal pattern. We test for the influence of proximate factors and ultimate drivers of natal dispersal: habitat fragmentation, local population density, individual behavior traits, inbreeding avoidance, competition for mates, and competition for resources, allowing us to better understand altered natal dispersal patterns at the periphery of a species' range. A juvenile squirrel's body condition and its mother's mass in spring (a reflection of her intrinsic quality and territory quality) contribute to individual behavioral tendencies for movement and exploration. Resources, behavior, and body condition have the strongest influence on natal dispersal distance, but affect males and females differently. Male natal dispersal distance is positively influenced by its mother's spring body mass and individual tendency for movement; female natal dispersal distance is negatively influenced by its mother's spring body mass and positively influenced by individual tendency for movement. An apparent feedback between environmental variables and subsequent juvenile behavioral state contributes to an altered natal dispersal pattern in a peripheral population, highlighting the importance of studying ecological processes at the both range center and periphery of species' distributions.

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