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1.
Data Brief ; 38: 107289, 2021 Oct.
Article in English | MEDLINE | ID: mdl-34458519

ABSTRACT

Mycoplasma gallisepticum (M. gallisepticum) belongs to the class of Mollicutes. It causes chronic respiratory disease in avian species. It is characterized by lack of cell wall and reduced genome size. As a result of genome reduction, M. gallisepticum has a limited variety of DNA-binding proteins (DBP) and transcription factors. Consequently, the diversity of DNA-binding proteins and transcription factors (TF) in M. gallisepticum is limited in comparison with related bacteria such as Bacillus subtilis. Studies have shown, however, that mycoplasmas demonstrate a wide range of differential expression of genes in response to various stress factors, which promotes effective adaptation to unfavorable conditions. We assume that in the case of mycoplasmas, which are characterized by a combination of the reduction of known gene expression regulation systems and a high adaptive potential, the coordination of gene expression can be provided due to local changes in the structure and spatial organization of the chromosome. The study of the dynamic changes of the proteomic profile of M. gallisepticum nucleoid may assist in revealing its mechanisms of functioning, regulation of chromosome organization and stress adaptation including its changes upon invasion of the host cells.

2.
Biochimie ; 95(11): 2123-31, 2013 Nov.
Article in English | MEDLINE | ID: mdl-23954621

ABSTRACT

Fragilysin (BFT) is metalloprotease that is secreted by enterotoxigenic Bacteroides fragilis. Studying the mechanism of BFT interaction with intestinal epithelial cells requires a pure protein sample. In this study, we cloned DNA-fragments coding for the catalytic domain of fragilysin-2 and profragilysin-2 into an E. coli expression vector. Purification methods for the recombinant fragilysin-2 catalytic domain and profragilysin-2 were developed. In addition, we obtained mature active fragilysin-2 from recombinant proprotein by limited tryptic digestion. We tested the biological activity of the recombinant protein samples and revealed that E-cadherin was cleaved when HT-29 cells were treated with mature fragilysin-2 but not with profragilysin-2. Azocoll, azocasein and gelatin were not proteolytically cleaved by mature fragilysin-2. Proteins released in culture medium after HT-29 cells treatment with mature active BFT-2 were identified.


Subject(s)
Bacteroides fragilis/genetics , Cloning, Molecular , Metalloendopeptidases/chemistry , Metalloendopeptidases/isolation & purification , Azo Compounds/chemistry , Bacteroides fragilis/chemistry , Cadherins/chemistry , Caseins/chemistry , Catalytic Domain/genetics , Collagen/chemistry , Escherichia coli , Gelatin/chemistry , Gene Expression Regulation, Bacterial , HT29 Cells , Humans , Metalloendopeptidases/genetics
3.
Biochemistry (Mosc) ; 75(6): 728-33, 2010 Jun.
Article in English | MEDLINE | ID: mdl-20636264

ABSTRACT

The addition of the channel-forming domain of colicin E1 to liposomes elicited the transmembrane diffusion (flip-flop) of lipids concomitant to the release of the fluorescent dye from liposomes. Good correlation was found between kinetic and concentration dependences of the two processes. Both the liposome leakage and the lipid flip-flop were stimulated upon alkalinization of the buffer solution after colicin binding at acidic pH. These results in combination with the analysis of the data on colicin binding to liposomes provide evidence in favor of the validity of the toroidal (proteolipidic) pore model as the mechanism of colicin channel formation.


Subject(s)
Colicins/metabolism , Lipids/chemistry , Liposomes/metabolism , Diffusion , Fluorescent Dyes/metabolism , Hydrogen-Ion Concentration , Kinetics , Protein Binding , Spectrometry, Fluorescence
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