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1.
Sci Rep ; 9(1): 3824, 2019 03 07.
Article in English | MEDLINE | ID: mdl-30846873

ABSTRACT

The Nitrogen Use Efficiency (NUE) of grain cereals depends on nitrate (NO3-) uptake from the soil, translocation to the aerial parts, nitrogen (N) assimilation and remobilization to the grains. Brachypodium distachyon has been proposed as a model species to identify the molecular players and mechanisms that affects these processes, for the improvement of temperate C3 cereals. We report on the developmental, physiological and grain-characteristic responses of the Bd21-3 accession of Brachypodium to variations in NO3- availability. As previously described in wheat and barley, we show that vegetative growth, shoot/root ratio, tiller formation, spike development, tissue NO3- and N contents, grain number per plant, grain yield and grain N content are sensitive to pre- and/or post-anthesis NO3- supply. We subsequently described constitutive and NO3--inducible components of both High and Low Affinity Transport Systems (HATS and LATS) for root NO3- uptake, and BdNRT2/3 candidate genes potentially involved in the HATS. Taken together, our data validate Brachypodium Bd21-3 as a model to decipher cereal N nutrition. Apparent specificities such as high grain N content, strong post-anthesis NO3- uptake and efficient constitutive HATS, further identify Brachypodium as a direct source of knowledge for crop improvement.


Subject(s)
Brachypodium/physiology , Nitrogen/analysis , Soil/chemistry , Brachypodium/genetics , Brachypodium/growth & development , Plant Proteins/genetics
2.
Curr Biol ; 11(20): 1559-68, 2001 Oct 16.
Article in English | MEDLINE | ID: mdl-11676915

ABSTRACT

BACKGROUND: The signal for the onset of septum formation in the fission yeast Schizosaccharomyces pombe is transduced by the septation initiation network (SIN). Many of the components of the SIN are located on the spindle pole body during mitosis, from where it is presumed that the signal for septum formation is delivered. Cdc11 mutants are defective in SIN signaling, but the role of cdc11 in the pathway has remained enigmatic. RESULTS: We have cloned the cdc11 gene by a combination of chromosome walking and transfection of cosmids into a cdc11 mutant. Cdc11p most closely resembles Saccharomyces cerevisiae Nud1p and is essential for septum formation. Cdc11p is a phosphoprotein, which becomes hyperphosphorylated during anaphase. It localizes to the spindle pole body at all stages of the cell cycle, in a sid4p-dependent manner, and cdc11p is required for the localization of all the known SIN components, except sid4p, to the SPB. Cdc11p and sid4p can be coimmunoprecipitated from cell extracts. Finally, like its S. cerevisiae ortholog Nud1p, cdc11p is involved in the proper organization of astral microtubules during mitosis. CONCLUSIONS: We propose that cdc11p acts as a bridge between sid4p and the other SIN proteins, mediating their association with the spindle pole body.


Subject(s)
Cell Cycle Proteins/genetics , Cell Cycle Proteins/metabolism , Cytoskeletal Proteins , Fungal Proteins/genetics , Fungal Proteins/metabolism , Microtubule-Associated Proteins/metabolism , Mitosis/physiology , Saccharomyces cerevisiae Proteins , Schizosaccharomyces pombe Proteins , Spindle Apparatus/metabolism , Cell Cycle/physiology , Cloning, Molecular/methods , Genes, Fungal/genetics , Mutation/genetics , Mutation/physiology , Phosphorylation , Proteins/metabolism , Schizosaccharomyces/metabolism , Up-Regulation/physiology
3.
J Appl Microbiol ; 91(2): 344-50, 2001 Aug.
Article in English | MEDLINE | ID: mdl-11473600

ABSTRACT

AIMS: To achieve reliable detection of methicillin resistance in clinical isolates of coagulase-negative staphylococci. METHODS AND RESULTS: Strains (105) were evaluated by normatized antimicrobial susceptibility methods, and for the presence of the methicillin resistance-determining mecA gene, using the polymerase chain reaction. Correlation between phenotypic and genotypic methods was obtained in 87.6% of the samples. Six strains, classified as methicillin-susceptible by phenotypic assays, revealed the presence of the mecA gene, indicating that methicillin resistance expression was probably repressed. Another seven isolates failed to show mecA amplification after displaying methicillin resistance in phenotypic evaluations. The susceptibility of the methicillin-resistant isolates to other antimicrobial agents was variable. CONCLUSION: Genotypic determination of the mecA gene proved to be the most reliable method for detection of methicillin resistance. SIGNIFICANCE AND IMPACT OF THE STUDY: Correct assessment of methicillin resistance, such as that attained through genotyping, is essential for defining therapeutic strategies, particularly when treating severely compromised patients.


Subject(s)
Bacterial Proteins , Coagulase/metabolism , Hexosyltransferases , Methicillin Resistance/genetics , Methicillin/pharmacology , Peptidyl Transferases , Staphylococcus/drug effects , Staphylococcus/genetics , Carrier Proteins/genetics , Genes, Bacterial/genetics , Genotype , Methicillin/therapeutic use , Microbial Sensitivity Tests , Muramoylpentapeptide Carboxypeptidase/genetics , Penicillin-Binding Proteins , Phenotype , Polymerase Chain Reaction , Staphylococcus/classification , Staphylococcus/enzymology
4.
Mol Cell Biol ; 19(6): 4247-54, 1999 Jun.
Article in English | MEDLINE | ID: mdl-10330165

ABSTRACT

Eukaryotic transcriptional activators generally comprise both a DNA-binding domain that recognizes specific cis-regulatory elements in the target genes and an activation domain which is essential for transcriptional stimulation. Activation domains typically behave as structurally and functionally autonomous modules that retain their intrinsic activities when directed to a promoter by a variety of heterologous DNA-binding domains. Here we report that OBF-1, a B-cell-specific coactivator for transcription factor Oct-1, challenges this traditional view in that it contains an atypical activation domain that exhibits two unexpected functional properties when tested in the yeast Saccharomyces cerevisiae. First, OBF-1 by itself has essentially no intrinsic activation potential, yet it strongly synergizes with other activation domains such as VP16 and Gal4. Second, OBF-1 exerts its effect in association with DNA-bound Oct-1 but is inactive when attached to a heterologous DNA-binding domain. These findings suggest that activation by OBF-1 is not obtained by simple recruitment of the coactivator to the promoter but requires interaction with DNA-bound Oct-1 to stimulate a step distinct from those regulated by classical activation domains.


Subject(s)
B-Lymphocytes/physiology , DNA-Binding Proteins/genetics , Trans-Activators/genetics , Transcription Factors/genetics , Transcription, Genetic , Cell Nucleus/metabolism , Chromosome Mapping , Electrophoresis, Polyacrylamide Gel , Genes, Reporter , Host Cell Factor C1 , Immunoassay , Models, Biological , Octamer Transcription Factor-1 , Phenotype , Protein Binding , Protein Structure, Tertiary , Saccharomyces cerevisiae/genetics , Time Factors
5.
Genes Dev ; 12(23): 3752-63, 1998 Dec 01.
Article in English | MEDLINE | ID: mdl-9851981

ABSTRACT

We have generated a mouse bearing a null allele of the gene encoding basic helix-loop-helix (bHLH) protein p48, the cell-specific DNA-binding subunit of hetero-oligomeric transcription factor PTF1 that directs the expression of genes in the exocrine pancreas. The null mutation, which establishes a lethal condition shortly after birth, leads to a complete absence of exocrine pancreatic tissue and its specific products, indicating that p48 is required for differentiation and/or proliferation of the exocrine cell lineage. p48 is so far the only developmental regulator known to be required exclusively for committing cells to an exocrine fate. The hormone secreting cells of all four endocrine lineages are present in the mesentery that normally harbors the pancreatic organ until day 16 of gestation. Toward the end of embryonic life, cells expressing endocrine functions are no longer detected at their original location but are now found to colonize the spleen, where they persist in a functional state until postnatal death of the organism occurs. These findings suggest that the presence of the exocrine pancreas is required for the correct spatial assembly of the endocrine pancreas and that, in its absence, endocrine cells are directed by default to the spleen, a site that, in some reptiles, harbors part of this particular cellular compartment.


Subject(s)
Helix-Loop-Helix Motifs , Islets of Langerhans/embryology , Pancreas/embryology , Transcription Factors/genetics , Animals , Antigens, Differentiation , Cell Lineage , Cell Movement , Islets of Langerhans/abnormalities , Islets of Langerhans/cytology , Mice , Mice, Mutant Strains , Models, Biological , Pancreas/abnormalities , Spleen/embryology
6.
Eur J Biochem ; 251(3): 724-8, 1998 Feb 01.
Article in English | MEDLINE | ID: mdl-9490045

ABSTRACT

The DnaK system is required for the productive folding of pea chloroplast ferredoxin-NADP+ reductase (FNR) expressed in Escherichia coli. The formation of a mature active enzyme was severely impaired in E. coli dnaK, dnaJ or grpE mutants expressing either the cytosolic precursor of the reductase (preFNR) or the mature apoenzyme, and these forms aggregated extensively in these cells. Coexpression of dnaK from a multicopy plasmid in the dnaK-null mutants restored preFNR processing and folding of FNR, rendering a mature-sized active enzyme. Overexpression of GroESL chaperonins failed to prevent preFNR aggregation, but it restored productive folding of FNR in dnaK-null mutants expressing the mature enzyme. Expression of preFNR in OmpT-protease-deficient E. coli cells resulted in the accumulation of the unprocessed precursor in the soluble fraction of the cells. The interaction of this soluble preFNR, but not the mature reductase, with DnaK and GroEL was evidenced by immunoprecipitation studies. We conclude that, in addition to the GroE chaperonins [Carrillo, N., Ceccarelli, E. A., Krapp, A. R., Boggio, S., Ferreyra, R. G. & Viale, A. M. (1992) J. Biol. Chem. 267, 15537-15541], the DnaK chaperone system plays a crucial role in the folding pathway of FNR.


Subject(s)
Bacterial Proteins/metabolism , Escherichia coli Proteins , Escherichia coli/physiology , Ferredoxin-NADP Reductase/biosynthesis , Ferredoxin-NADP Reductase/chemistry , HSP70 Heat-Shock Proteins/metabolism , Heat-Shock Proteins/metabolism , Molecular Chaperones/metabolism , Operon , Pisum sativum/enzymology , Protein Folding , Alleles , Bacterial Proteins/genetics , Binding Sites , Chaperonins , Chloroplasts/enzymology , Cloning, Molecular , Escherichia coli/genetics , HSP40 Heat-Shock Proteins , HSP70 Heat-Shock Proteins/genetics , Heat-Shock Proteins/genetics , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry
7.
Planta ; 207(1): 27-41, 1998 Dec.
Article in English | MEDLINE | ID: mdl-9951717

ABSTRACT

Diurnal changes in carbohydrates and nitrate reductase (NR) activity were compared in tobacco (Nicotiana tabacum. L.cv. Gatersleben) plants growing in a long (18 h light/6 h dark) and a short (6 h light/18 h dark) day growth regime, or after short-term changes in the light regime. In long-day-grown plants, source leaves contained high levels of sugars throughout the light and dark periods. In short-day-grown plants, levels of sucrose and reducing sugars were very low at the end of the night and, although they rose during the light period, remained much lower than in long days and declined to very low levels again by the middle of the night. Starch accumulated more rapidly in short-day-than long-day-grown plants. Starch was completely remobilised during the night in short days, but not in long days. A single short day/long night cycle sufficed to stimulate starch accumulation during the following light period. In long-day-grown plants, the Nia transcript level was high at the end of the night, decreased during the day, and recovered gradually during the night. In short-day-grown plants, the Nia transcript level was relatively low at the end of the night, decreased to very low levels at the end of the light period, increased to a marked maximum in the middle of the night, and decreased during the last 5 h of the dark period. In long-day-grown plants, NR activity in source leaves rose by 2- to 3-fold in the first part of the light period and decreased in the second part of the light period. In short-day-grown plants, NR activity was low at the end of the night, and only increased slightly after illumination. Dark inactivation of source-leaf NR was partially reversed in long-day-grown plants, but not in short day-grown plants. In both growth regimes, mutants with one instead of four functional copies of the Nia gene had a 60% reduction in maximum NR activity in the source leaves, compared to wild-type plants. The diurnal changes in NR activity were almost completely suppressed in the mutants in long days, whereas the mutants showed similar or slightly larger diurnal changes than wild-type plants in short days. When short-day-grown plants were transferred to long-day conditions for 3 d, NR activity and the diurnal changes in NR activity resembled those in long-day-grown plants. Phloem export from source leaves of short-day-grown plants was partially inhibited by applying a cold-girdle for one light and dark cycle. The resulting increase in leaf sugar was accompanied by an marked increase in the Nia transcript level and a 2-fold increase in NR activity at the end of the dark period. When wild-type plants were subjected to a single short day/long night cycle of increasing severity, NR activity in source leaves at the end of the night decreased when the endogenous sugars declined below about 3 mumol hexose (g FW)-1. In sink leaves in short-day conditions, sugars were higher and the light-induced rise in NR activity was much larger than in source leaves on the same plants. The source leaves of wild-type plants in short-day conditions contained very high levels of nitrate, very low levels of glutamine, low levels of total amino acids, and lower protein and chlorophyll, compared to long-day-grown plants. Plants grown in short days had relatively high levels of glutamate and aspartate, and extremely low levels of most of the minor amino acids in their source leaves at the end of the night. Illumination led to a decrease in glutamate and an increase in the minor amino acids. A single short day/long night cycle led to an increase in glutamate, and a large decrease in the minor acids at the end of the dark period, and reillumination led to a decrease in glutamate and an increase in the minor amino acids. It is proposed that sugar-mediated control of Nia expression and NR activity overrides regulation by nitrogenous compounds when sugars are in short supply, resulting in a severe inhibition of nitrate assimilation. It is also proposed that su


Subject(s)
Amino Acids/biosynthesis , Carbohydrate Metabolism , Nicotiana/metabolism , Nitrate Reductases/metabolism , Plants, Toxic , Starch/metabolism , Chlorophyll , Darkness , Light , Nitrate Reductase , Nitrate Reductases/genetics , Nitrates/metabolism , Plant Leaves/enzymology , Nicotiana/enzymology , Nicotiana/growth & development
8.
Eur J Biochem ; 249(2): 556-63, 1997 Oct 15.
Article in English | MEDLINE | ID: mdl-9370367

ABSTRACT

Ferredoxin-NADP+ reductases (FNR) participate in cellular defense against oxidative damage. Escherichia coli mutants deficient in FNR are abnormally sensitive to methyl viologen and hydrogen peroxide. Tolerance to these oxidants was regained by expression of plant FNR, superoxide dismutase, or catalase genes in the mutant cells. FNR contribution to the concerted defense against viologen toxicity under redox-cycling conditions was similar to that of the two major E. coli superoxide dismutases together, as judged by the phenotypes displayed by relevant mutant strains. However, FNR expression in sodA sodB strains failed to increase their tolerance to viologens, indicating that the FNR target is not the superoxide radical. Sensitivity of FNR-deficient cells to oxidants is related to extensive DNA damage. Incubation of the mutant bacteria with iron chelators or hydroxyl radical scavengers provided significant protection against viologens or peroxide, suggesting that oxidative injury in FNR-deficient cells was mediated by intracellular iron through the formation of hydroxyl radicals in situ. The NADP(H)-dependent activities of the reductase were necessary and sufficient for detoxification, without participation of either ferredoxin or flavodoxin in the process. Possible mechanisms by which FNR may exert its protective role are discussed.


Subject(s)
Escherichia coli Proteins , Escherichia coli/physiology , Ferredoxin-NADP Reductase/metabolism , Genes, Plant , Oxidative Stress/physiology , Bacterial Proteins/biosynthesis , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Catalase/biosynthesis , Catalase/metabolism , Chloroplasts/enzymology , Cloning, Molecular , Escherichia coli/drug effects , Escherichia coli/genetics , Ferredoxin-NADP Reductase/biosynthesis , Ferredoxin-NADP Reductase/genetics , Gene Expression Regulation, Enzymologic/drug effects , Hydrogen Peroxide/pharmacology , Iron-Sulfur Proteins/biosynthesis , Iron-Sulfur Proteins/genetics , Iron-Sulfur Proteins/metabolism , Solanum lycopersicum/enzymology , Solanum lycopersicum/genetics , Models, Biological , Models, Structural , Oxygen/toxicity , Paraquat/pharmacology , Pisum sativum/enzymology , Pisum sativum/genetics , Protein Conformation , Recombinant Proteins/biosynthesis , Recombinant Proteins/metabolism , Superoxide Dismutase/biosynthesis , Superoxide Dismutase/genetics , Superoxide Dismutase/metabolism
9.
Plant Mol Biol ; 34(2): 265-74, 1997 May.
Article in English | MEDLINE | ID: mdl-9207842

ABSTRACT

A family of high-affinity nitrate transporters has been identified in Aspergillus nidulans and Chlamydomonas reinhardtii, and recently homologues of this family have been cloned from a higher plant (barley). Based on six of the peptide sequences most strongly conserved between the barley and C. reinhardtii polypeptides, a set of degenerate primers was designed to permit amplification of the corresponding genes from other plant species. The utility of these primers was demonstrated by RT-PCR with cDNA made from poly(A)+ RNA from barley, C. reinhardtii and Nicotiana plumbaginifolia. A PCR fragment amplified from N. plumbaginifolia was used as probe to isolate a full-length cDNA clone which encodes a protein, NRT2;1Np, that is closely related to the previously isolated crnA homologue from barley. Genomic Southern blots indicated that there are only 1 or 2 members of the Nrt2 gene family in N. plumbaginifolia. Northern blotting showed that the Nrt2 transcripts are most strongly expressed in roots. The effects of external treatments with different N sources showed that the regulation of the Nrt2 gene(s) is very similar to that reported for nitrate reductase and nitrite reductase genes: their expression was strongly induced by nitrate but was repressed when reduced forms of N were supplied to the roots.


Subject(s)
Anion Transport Proteins , Bacterial Proteins/metabolism , Carrier Proteins/genetics , Carrier Proteins/metabolism , DNA, Complementary/isolation & purification , Fungal Proteins , Genes, Plant , Multigene Family , Nicotiana/genetics , Nitrates/metabolism , Plants, Toxic , Sequence Homology, Nucleic Acid , Amino Acid Sequence , Animals , Base Sequence , Chlamydomonas reinhardtii/genetics , Cloning, Molecular , DNA Primers , DNA, Plant/isolation & purification , Gene Expression Regulation, Plant/drug effects , Genome, Plant , Hordeum/genetics , Molecular Sequence Data , Nitrate Transporters , Nitrates/pharmacology , Nitrogen/pharmacology , Plant Roots/genetics , Polymerase Chain Reaction
10.
J Biol Chem ; 271(36): 21993-2002, 1996 Sep 06.
Article in English | MEDLINE | ID: mdl-8703005

ABSTRACT

We have cloned and characterized the rat gene that encodes the p48 DNA-binding subunit of pancreas transcription factor 1 (Ptf1), a cell-specific basic region helix-loop-helix (bHLH) protein. The ptf1-p48 gene measures 1.8 kilobases in size and occurs as a single copy in the haploid genome. Run-on transcription assays suggest that this gene is subject to transcriptional control since no activity of its promoter is detected in nonproducing cells. The gene specifies two mRNAs that encode the same protein and originate from transcription initiation at alternative sites. Expression analysis of hybrid genes bearing deletions of the gene's 5'-flanking region fused to a reporter gene defines a promoter region within the gene-proximal 260 base pairs of DNA. The cis-acting elements that control promoter activity include binding sites for transcription factors Sp1 and alphaCbf, a 60-kDa CCAAT box-binding protein. The gene promoter, however, functions not only in exocrine pancreatic cells but also in cells of other origin. No cell-specific transcriptional control element was detected in as much as 10 kilobases of 5'-flanking region. We discuss models of how the cell-specific expression of the endogenous ptf1-p48 gene might be established during development of the animal.


Subject(s)
DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Sp1 Transcription Factor/metabolism , Transcription Factors/genetics , Animals , Base Sequence , Binding Sites , CCAAT-Enhancer-Binding Proteins , Cloning, Molecular , DNA Footprinting , Deoxyribonuclease I/metabolism , Electrophoresis, Polyacrylamide Gel , Molecular Sequence Data , Rats , Rats, Sprague-Dawley
11.
EMBO J ; 15(16): 4317-29, 1996 Aug 15.
Article in English | MEDLINE | ID: mdl-8861960

ABSTRACT

We report the isolation of cDNA for the p48 DNA-binding subunit of the heterooligomeric transcription factor PTF1. A sequence analysis of the cDNA demonstrates that p48 is a new member of the family of basic helix-loop-helix (bHLH) transcription factors. The p48 bHLH domain shows striking amino acid sequence similarity with the bHLH domain of proteins that act as developmental regulators, including the twist gene product, myogenic factors and proteins involved in hematopoietic differentiation. We show that reduced p48 synthesis correlates with a diminished expression of genes encoding exocrine pancreas-specific functions. The synthesis of p48 mRNAs, and therefore also the protein, is restricted to cells of the exocrine pancreas in the adult and to the pancreatic primordium in the embryo. Thus the pancreas-specific DNA-binding activity of PTF1 originates from the synthesis of at least one cell-specific component rather than from a cell-specific assembly of more widely distributed proteins.


Subject(s)
DNA/metabolism , Helix-Loop-Helix Motifs , Pancreas/metabolism , Transcription Factors/chemistry , Amino Acid Sequence , Animals , Base Sequence , Basic Helix-Loop-Helix Transcription Factors , Cells, Cultured , DNA, Complementary/genetics , DNA-Binding Proteins/chemistry , Gene Expression Regulation, Developmental , Mice , Mice, Inbred BALB C , Molecular Sequence Data , Multigene Family , Organ Specificity , Pancreas/embryology , Pancreas/growth & development , RNA, Messenger/biosynthesis , RNA, Messenger/genetics , Rats , Rats, Sprague-Dawley , Sequence Alignment , Sequence Homology, Amino Acid , Transcription Factors/genetics , Transcription Factors/metabolism
12.
Z Gastroenterol ; 34 Suppl 3: 108-9, 1996 Jun.
Article in English | MEDLINE | ID: mdl-8767481

ABSTRACT

A strong candidate for the long searched CR receptor might be the a2MR/LRP. We oversee a whole series of in vitro experiments from different laboratories today which show that LRP expresses all features for being such a receptor protein. LRP is localized on the liver cell surface, as well as on most other animal cells. It recognizes apo E enriched lipoproteins, as beta-VLDL and CR. There is evidence that CR contains LPL and it has been demonstrated that LPL binds with high affinity to LRP. This has been shown in cell binding experiments with subsequent cross-linking and in direct binding assays on purified receptor protein. HL which is expressed in liver cells and localized at the liver cell surface is also able to bind to LRP. LRP is moreover found in endosomes and can mediate the uptake of beta-VLDL and CR. Further studies are necessary to evaluate its role in vivo as well as its regulation. The interplay between the different ligands of this large multifunctional receptor protein needs to be clarified. It should be emphasized here that by describing LPL as a new mediator of CR untake in the liver and providing evidence for an interaction between LPL and LRP the role of LRP in the remnant catabolism has become even more likely.


Subject(s)
Lipase/physiology , Lipoprotein Lipase/physiology , Lipoproteins/blood , Liver/enzymology , Triglycerides/blood , Animals , Cell Line , Chylomicrons/blood , Humans , Lipoproteins, VLDL/genetics , Lipoproteins, VLDL/physiology , Low Density Lipoprotein Receptor-Related Protein-1 , Receptors, Immunologic/genetics , Receptors, Immunologic/physiology
13.
J Lipid Res ; 37(5): 926-36, 1996 May.
Article in English | MEDLINE | ID: mdl-8725146

ABSTRACT

The uptake of triglyceride-rich lipoproteins has been described as being mediated by apolipoprotein E and lipoprotein lipase (LpL). Proteoglycans, the LDL-receptor, and the LDL receptor-related protein (LRP) are the cellular acceptors. In addition to LpL, hepatic lipase (HL) has been shown to bind to LRP. In this study, the role of HL in lipoprotein uptake was investigated. Human chylomicrons and rabbit beta-VLDL were used as ligands for human hepatoma cells, primary human hepalocytes, normal and proteoglycan-deficient Chinese hamster ovary (CHO) cells, and normal and LDL receptor-deficient human fibroblasts. We show that HL induces stimulation of the uptake of chylomicrons and beta-VLDL into the different cell lines. HL is known to bind to heparan sulfate, and experiments on normal and proteoglycan-deficient CHO cells showed that cell surface proteoglycans are essential for HL-mediated uptake of lipoproteins. To exclude LDL receptor-mediated uptake. we performed experiments on LDL receptor-deficient fibroblasts that demonstrated that the LDL receptor was not important for the HL-mediated uptake of lipoproteins. Crosslinking experiments confirmed the binding of HL to LRP on the cell surface. To identify the region of HL involved in the interaction with LRP, we used a C-terminal fragment of LpL, known to inhibit LpL-mediated uptake. HL-mediated lipoprotein uptake was suppressed by this fragment. Our experiments indicate that HL, like LpL, can mediate the uptake of lipoproteins into cells, most probably via a C-terminal binding site. The uptake, initiated by proteoglycan binding, is mediated by LRP.


Subject(s)
Chylomicrons/metabolism , Lipase/physiology , Lipoproteins, VLDL/metabolism , Liver/enzymology , Receptors, Immunologic/physiology , Receptors, LDL , Animals , CHO Cells , Cells, Cultured , Cricetinae , Fibroblasts/metabolism , Humans , Lipoproteins/metabolism , Low Density Lipoprotein Receptor-Related Protein-1 , Membrane Proteins/metabolism , Protein Binding , Proteoglycans/metabolism , Rabbits , Tumor Cells, Cultured
14.
Eur J Biochem ; 238(1): 192-7, 1996 May 15.
Article in English | MEDLINE | ID: mdl-8665937

ABSTRACT

The cytosolic precursor of the chloroplast flavoprotein ferredoxin-NADP+ reductase was expressed in Escherichia coli rendering a soluble protein that contained bound FAD and could be imported by isolated chloroplasts. The mechanism of plastid translocation was studied under defined conditions using this recombinant precursor holoprotein and intact pea chloroplasts. The first step in the import pathway, namely, binding of the reductase precursor to isolated chloroplasts, was saturable at about 2000 molecules/plastid, and showed a high-affinity interaction with a dissociation constant Kd of approximately 5 nM. Binding was not affected by the addition of soluble leaf extracts or by prior denaturation of the precursor with urea. Analysis of the initial import rates at different precursor concentrations indicated the existence of a single translocation system for this protein. Inclusion of leaf extracts in the assay resulted in a three-fold increase of the maximal import rates to 14,000 molecules . min-(1).chloroplast-(1), with a concomitant decrease in the apparent Km for the recombinant precursor, from 1 microM to 100-150 nM. Comparison of Km and Kd values under various conditions indicated that the binding step of the translocation process is largely irreversible, favouring import and processing. In the absence of extract, a denatured precursor obtained by incubation with urea was a better substrate for plastid import than the holoprotein. Treatment of the precursor with either extract or urea resulted in similar increases in import efficiency (V/Km), suggesting that stimulation by leaf extracts is probably related to unfolding of the precursor prior to translocation.


Subject(s)
Chloroplasts/metabolism , Ferredoxins/chemistry , Ferredoxins/metabolism , NADP/metabolism , Biological Transport , Chloroplasts/enzymology , Enzyme Precursors/chemistry , Enzyme Precursors/metabolism , NADP/chemistry , Plant Leaves/chemistry , Protein Conformation , Protein Denaturation , Protein Folding , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Structure-Activity Relationship , Time Factors , Urea/chemistry
15.
Mol Gen Genet ; 250(3): 357-66, 1996 Feb 25.
Article in English | MEDLINE | ID: mdl-8602151

ABSTRACT

This work reports the isolation and preliminary characterization of Nicotiana plumbaginifolia mutants resistant to methylammonium. Nicotiana plumbaginifolia plants cannot grow on low levels of nitrate in the presence of methylammonium. Methylammonium is not used as a nitrogen source, although it can be efficiently taken up by Nicotiana plumbaginifolia cells and converted into methylglutamine, an analog of glutamine. Glutamine is known to repress the expression of the enzymes that mediate the first two steps in the nitrate assimilatory pathway, nitrate reductase (NR) and nitrite reductase (NiR). Methylammonium has therefore been used, in combination with low concentrations of nitrate, as a selective agent in order to screen for mutants in which the nitrate pathway is de-repressed. Eleven semi-dominant mutants, all belonging to the same complementation group, were identified. The mutant showing the highest resistance to methylammonium was not affected either in the utilization of ammonium, accumulation of methylammonium or in glutamine synthase activity. A series of experiments showed that utilization of nitrite by the wild-type and the mutant was comparable, in the presence or the absence of methylammonium, thus suggesting that the mutation specifically affected nitrate transport or reduction. Although NR mRNA levels were less repressed by methylammonium treatment of the wild-type than the mutant, NR activities of the mutant remained comparable with or without methylammonium, leading to the hypothesis that modified expression of NR is probably not responsible for resistance to methylammonium. Methylammonium inhibited nitrate uptake in the wild-type but had only a limited effect in the mutant. The implications of these results are discussed.


Subject(s)
Methylamines/pharmacology , Nicotiana/genetics , Nitrates/metabolism , Plants, Toxic , Amino Acids/metabolism , Biological Transport , Chromatography, High Pressure Liquid , Drug Resistance , Ethyl Methanesulfonate/pharmacology , Gene Expression Regulation, Plant/genetics , Glutamate-Ammonia Ligase/metabolism , Glutamates/metabolism , Glutamates/pharmacology , Methylamines/metabolism , Mutagenesis , Nitrate Reductase , Nitrate Reductases/genetics , Nitrate Reductases/metabolism , Phenotype , Quaternary Ammonium Compounds/metabolism , Quaternary Ammonium Compounds/pharmacology , RNA, Messenger/genetics , RNA, Messenger/metabolism , Nicotiana/drug effects , Nicotiana/metabolism
16.
J Lipid Res ; 36(11): 2362-73, 1995 Nov.
Article in English | MEDLINE | ID: mdl-8656074

ABSTRACT

Lipoprotein lipase (LpL) has been shown to mediate the uptake of lipoproteins into cells. The uptake is initiated by binding of LpL to cell surface proteoglycans and to the low density lipoprotein (LDL) receptor-related protein. This ability of LpL is independent of catalytic activity and depends on the intact dimeric structure of the lipase and functional residues in the C-terminal domain. The goal of this study was to identify structural features in LpL that are essential in the mediation of lipoprotein uptake. Naturally occurring variants and LpL mutants produced by site-directed mutagenesis were cloned and expressed in COS-cells. A combination of immunoassays and separation on heparin-Sepharose columns was used to determine the molar ratio of monomeric to dimeric LpL in the expression media. The mutants were tested for their ability to mediate the uptake of 125I-labeled beta-VLDL in cultured Hep3b cells in direct comparison with wild type LpL. We found that the concentration of monomer in the media correlated negatively with the effect on the uptake mediated by the dimeric form of LpL. A mutation affecting the catalytic activity (Asp 156Gly) resulted in no significant reduction in the lipase-mediated beta-VLDL uptake. Point mutations in the proposed lipid binding region Trp390Ala or Trp393Ala and the substitution of 390-393 with the homologous hepatic lipase (HL) sequence were also normal, while the deletion of 390-393 reduced the ability to mediate the uptake by about 60% in comparison to wild type. A mutation known to impair heparin binding (Arg294Ala) was also less efficient than the wild type in mediating uptake. In conclusion, it is important to determine the monomer/dimer ratio in mutant preparations as the presence of monomers inhibits the uptake mediated by the dimeric LpL. Moreover, sites involved in heparin and lipid binding between residues 390-421 are important for LpL-mediated lipoprotein uptake.


Subject(s)
Cells/metabolism , Lipoprotein Lipase/chemistry , Lipoproteins/metabolism , Catalysis , Cell Line , Heparin/metabolism , Humans , Lipoprotein Lipase/physiology , Mutation , Protein Binding , Structure-Activity Relationship , Tumor Cells, Cultured
17.
J Biol Chem ; 270(34): 19930-5, 1995 Aug 25.
Article in English | MEDLINE | ID: mdl-7650008

ABSTRACT

The precursor of the chloroplast flavoprotein ferredoxin-NADP+ reductase from pea was expressed in Escherichia coli as a carboxyl-terminal fusion to glutathione S-transferase. The fused protein was soluble, and the precursor could be purified in a few steps involving affinity chromatography on glutathione-agarose, cleavage of the transferase portion by protease Xa, and ion exchange chromatography on DEAE-cellulose. The purified prereductase contained bound FAD but displayed marginally low levels of activity. Removal of the transit peptide by limited proteolysis rendered a functional protease-resistant core exhibiting enzymatic activity. The FAD-containing precursor expressed in E. coli was readily transported into isolated pea chloroplasts and was processed to the mature size, both inside the plastid and by incubation with stromal extracts in a plastid-free reaction. Import was dependent on the presence of ATP and was stimulated severalfold by the addition of plant leaf extracts.


Subject(s)
Enzyme Precursors/metabolism , Ferredoxin-NADP Reductase/metabolism , Pisum sativum/enzymology , Base Sequence , Biological Transport, Active , Chloroplasts/enzymology , DNA, Complementary/genetics , DNA, Plant/genetics , Enzyme Precursors/chemistry , Enzyme Precursors/genetics , Escherichia coli/genetics , Ferredoxin-NADP Reductase/chemistry , Ferredoxin-NADP Reductase/genetics , Flavin-Adenine Dinucleotide/chemistry , Genetic Vectors , Molecular Sequence Data , Pisum sativum/genetics , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism
18.
Arch Biochem Biophys ; 317(1): 215-21, 1995 Feb 20.
Article in English | MEDLINE | ID: mdl-7872787

ABSTRACT

Escherichia coli cells carrying the mvrA mutation are unable to grow aerobically in the presence of the radical propagator methyl viologen (MV). Resistance against MV toxicity could be restored by the introduction of cloned DNA sequences encoding pea chloroplast ferredoxin-NADP+ reductase (FNR), a member of a class of flavoenzymes involved in redox pathways in bacteria, plants and animals. Complementation was strictly dependent on the accumulation of a functional transgenic FNR, since mutated reductases showing decreased enzymatic activities only partially rescued the MV-resistant phenotype. These results support recent observations suggesting that the E. coli mvrA gene encodes a ferredoxin (flavodoxin)-NADP+ reductase (V. Bianchi et al. (1993) J. Bacteriol. 175, 1590-1595). The mvrA mutant cells showed a moderate decrease in the flavodoxin-dependent activation of enzymes essential for anaerobic growth of E. coli. This effect is prevented by expression of a functional pea FNR in the mutant cells.


Subject(s)
Escherichia coli/enzymology , Oxidoreductases/metabolism , Paraquat/metabolism , Pisum sativum/enzymology , Chloroplasts/enzymology , Enzyme Activation , Escherichia coli/genetics , Escherichia coli/growth & development , Flavodoxin/pharmacology , Mutation , Oxidoreductases/genetics , Paraquat/pharmacology
19.
Ann N Y Acad Sci ; 737: 53-69, 1994 Sep 10.
Article in English | MEDLINE | ID: mdl-7524435

ABSTRACT

A strong candidate for the long-searched CR receptor might be the alpha 2MR/LRP. Presently, we are overseeing a whole series of in vitro experiments from different laboratories that show that LRP expresses all the features for being such a receptor protein. LRP is localized on the liver cell surface, as well as on most other animal cells. It recognizes apo E-enriched lipoproteins as beta-VLDL and CR. There is evidence that CR contain LPL and it has been demonstrated that LPL binds with high affinity to LRP. This has been shown in cell binding experiments with subsequent cross-linking and in direct assays on purified receptor protein. HL, which is expressed in liver cells and localized at the liver cell surface, is also able to bind to LRP. Moreover, LRP is found in endosomes and can mediate the uptake of beta-VLDL and CR. Further studies are necessary to evaluate its role in vivo as well as its regulation. The interplay between the different ligands of this large multifunctional receptor protein needs to be clarified. It should be emphasized here that, by describing LPL as a new mediator of CR uptake in the liver and by providing evidence for a direct interaction between LPL and LRP, the role of LRP in the remnant catabolism has become even more likely.


Subject(s)
Chylomicrons/metabolism , Receptors, Immunologic/metabolism , Receptors, LDL/metabolism , Amino Acid Sequence , Animals , Apolipoprotein C-II , Apolipoproteins C/metabolism , Apolipoproteins E/metabolism , Cattle , Heparin/metabolism , Humans , Hyperlipoproteinemia Type III/metabolism , Lipase/metabolism , Lipoprotein Lipase/metabolism , Liver/enzymology , Liver/metabolism , Low Density Lipoprotein Receptor-Related Protein-1 , Molecular Sequence Data , Proteoglycans/metabolism , Sequence Homology, Amino Acid , alpha-Macroglobulins/metabolism
20.
Protein Expr Purif ; 4(6): 539-46, 1993 Dec.
Article in English | MEDLINE | ID: mdl-8286951

ABSTRACT

Complementary DNA sequences encoding the mature form of pea ferredoxin-NADP+ reductase were cloned in-frame at the 3' end of the Schistosoma japonicum glutathione S-transferase gene in the expression vector pGEX-3X (Smith and Johnson, Gene 67, 31-40, 1988). A spacer sequence linking the two genes was modified to provide a proteolytic site just before the first amino acid residue of mature pea reductase. When introduced into competent Escherichia coli cells and induced, the resulting plasmid (pGF205) directed the expression of a 60-kDa immunoreactive peptide that results from the fusion between glutathione S-transferase and ferredoxin-NADP+ reductase sequences. The fused protein could be purified in a single step by selective absorption onto glutathione-agarose beads, followed by elution with free glutathione. It showed both transferase and reductase activities. Removal of the transferase portion by cleavage with the restriction protease Xa rendered ferredoxin-NADP+ reductase electrophoretically homogeneous. The purified transgenic enzyme showed kinetic and spectroscopic properties that were similar to those reported for the plant flavoprotein, indicating that, even when fused to the 27-kDa transferase portion, the reductase was still able to assemble FAD and to acquire an active conformation in the bacterial host. The expression-purification protocol employed here allows the isolation of up to 1 mg of active ferredoxin-NADP+ reductase/g of transformed cells. The system is potentially useful for the purification of activity-impaired forms of the flavoprotein.


Subject(s)
Fabaceae/enzymology , Ferredoxin-NADP Reductase/genetics , Ferredoxin-NADP Reductase/isolation & purification , Plants, Medicinal , Amino Acid Sequence , Base Sequence , Endopeptidases/metabolism , Fabaceae/genetics , Ferredoxin-NADP Reductase/biosynthesis , Ferredoxin-NADP Reductase/metabolism , Glutathione Transferase/biosynthesis , Glutathione Transferase/genetics , Glutathione Transferase/isolation & purification , Molecular Sequence Data , Plasmids/genetics , Recombinant Fusion Proteins/biosynthesis , Recombinant Fusion Proteins/isolation & purification , Recombinant Fusion Proteins/metabolism
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