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1.
Front Genet ; 15: 1393856, 2024.
Article in English | MEDLINE | ID: mdl-38725481

ABSTRACT

DNA methylation indicates the individual's aging, so-called Epigenetic clocks, which will improve the research and diagnosis of aging diseases by investigating the correlation between methylation loci and human aging. Although this discovery has inspired many researchers to develop traditional computational methods to quantify the correlation and predict the chronological age, the performance bottleneck delayed access to the practical application. Since artificial intelligence technology brought great opportunities in research, we proposed a perceptron model integrating a channel attention mechanism named PerSEClock. The model was trained on 24,516 CpG loci that can utilize the samples from all types of methylation identification platforms and tested on 15 independent datasets against seven methylation-based age prediction methods. PerSEClock demonstrated the ability to assign varying weights to different CpG loci. This feature allows the model to enhance the weight of age-related loci while reducing the weight of irrelevant loci. The method is free to use for academics at www.dnamclock.com/#/original.

2.
Sensors (Basel) ; 24(4)2024 Feb 08.
Article in English | MEDLINE | ID: mdl-38400263

ABSTRACT

Stroke represents a medical emergency and can lead to the development of movement disorders such as abnormal muscle tone, limited range of motion, or abnormalities in coordination and balance. In order to help stroke patients recover as soon as possible, rehabilitation training methods employ various movement modes such as ordinary movements and joint reactions to induce active reactions in the limbs and gradually restore normal functions. Rehabilitation effect evaluation can help physicians understand the rehabilitation needs of different patients, determine effective treatment methods and strategies, and improve treatment efficiency. In order to achieve real-time and accuracy of action detection, this article uses Mediapipe's action detection algorithm and proposes a model based on MPL-CNN. Mediapipe can be used to identify key point features of the patient's upper limbs and simultaneously identify key point features of the hand. In order to detect the effect of rehabilitation training for upper limb movement disorders, LSTM and CNN are combined to form a new LSTM-CNN model, which is used to identify the action features of upper limb rehabilitation training extracted by Medipipe. The MPL-CNN model can effectively identify the accuracy of rehabilitation movements during upper limb rehabilitation training for stroke patients. In order to ensure the scientific validity and unified standards of rehabilitation training movements, this article employs the postures in the Fugl-Meyer Upper Limb Rehabilitation Training Functional Assessment Form (FMA) and establishes an FMA upper limb rehabilitation data set for experimental verification. Experimental results show that in each stage of the Fugl-Meyer upper limb rehabilitation training evaluation effect detection, the MPL-CNN-based method's recognition accuracy of upper limb rehabilitation training actions reached 95%. At the same time, the average accuracy rate of various upper limb rehabilitation training actions reaches 97.54%. This shows that the model is highly robust across different action categories and proves that the MPL-CNN model is an effective and feasible solution. This method based on MPL-CNN can provide a high-precision detection method for the evaluation of rehabilitation effects of upper limb movement disorders after stroke, helping clinicians in evaluating the patient's rehabilitation progress and adjusting the rehabilitation plan based on the evaluation results. This will help improve the personalization and precision of rehabilitation treatment and promote patient recovery.


Subject(s)
Movement Disorders , Stroke Rehabilitation , Stroke , Humans , Upper Extremity/physiology , Hand , Movement/physiology , Treatment Outcome , Recovery of Function/physiology , Receptors, Thrombopoietin
3.
Bioengineering (Basel) ; 11(1)2023 Dec 28.
Article in English | MEDLINE | ID: mdl-38247911

ABSTRACT

Aging is a significant contributing factor to degenerative diseases such as cancer. The extent of DNA methylation in human cells indicates the aging process and screening for age-related methylation sites can be used to construct epigenetic clocks. Thereby, it can be a new aging-detecting marker for clinical diagnosis and treatments. Predicting the biological age of human individuals is conducive to the study of physical aging problems. Although many researchers have developed epigenetic clock prediction methods based on traditional machine learning and even deep learning, higher prediction accuracy is still required to match the clinical applications. Here, we proposed an epigenetic clock prediction method based on a Resnet neuro networks model named ResnetAge. The model accepts 22,278 CpG sites as a sample input, supporting both the Illumina 27K and 450K identification frameworks. It was trained using 32 public datasets containing multiple tissues such as whole blood, saliva, and mouth. The Mean Absolute Error (MAE) of the training set is 1.29 years, and the Median Absolute Deviation (MAD) is 0.98 years. The Mean Absolute Error (MAE) of the validation set is 3.24 years, and the Median Absolute Deviation (MAD) is 2.3 years. Our method has higher accuracy in age prediction in comparison with other methylation-based age prediction methods.

4.
Sensors (Basel) ; 22(15)2022 Jul 25.
Article in English | MEDLINE | ID: mdl-35898032

ABSTRACT

With the wide application of social media, public opinion analysis in social networks has been unable to be met through text alone because the existing public opinion information includes data information of various modalities, such as voice, text, and facial expressions. Therefore multi-modal emotion analysis is the current focus of public opinion analysis. In addition, multi-modal emotion recognition of speech is an important factor restricting the multi-modal emotion analysis. In this paper, the emotion feature retrieval method for speech is firstly explored and the processing method of sample disequilibrium data is then analyzed. By comparing and studying the different feature fusion methods of text and speech, respectively, the multi-modal feature fusion method for sample disequilibrium data is proposed to realize multi-modal emotion recognition. Experiments are performed using two publicly available datasets (IEMOCAP and MELD), which shows that processing multi-modality data through this method can obtain good fine-grained emotion recognition results, laying a foundation for subsequent social public opinion analysis.


Subject(s)
Public Opinion , Voice , Emotions , Facial Expression , Humans , Social Networking
5.
Front Oncol ; 12: 884523, 2022.
Article in English | MEDLINE | ID: mdl-35692785

ABSTRACT

Radiotherapy is one of the important treatments for malignant tumors. The precision of radiotherapy is affected by the respiratory motion of human body, so real-time motion tracking for thoracoabdominal tumors is of great significance to improve the efficacy of radiotherapy. This paper aims to establish a highly precise and efficient prediction model, thus proposing to apply a depth prediction model composed of multi-scale enhanced convolution neural network and temporal convolutional network based on empirical mode decomposition (EMD) in respiratory prediction with different delay times. First, to enhance the precision, the unstable original sequence is decomposed into several intrinsic mode functions (IMFs) by EMD, and then, a depth prediction model of parallel enhanced convolution structure and temporal convolutional network with the characteristics specific to IMFs is built, and finally training on the respiratory motion dataset of 103 patients with malignant tumors is conducted. The prediction precision and time efficiency of the model are compared at different levels with those of the other three depth prediction models so as to evaluate the performance of the model. The result shows that the respiratory motion prediction model determined in this paper has superior prediction performance under different lengths of input data and delay time, and, furthermore, the network update time is shortened by about 60%. The method proposed in this paper will greatly improve the precision of radiotherapy and shorten the radiotherapy time, which is of great application value.

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