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Bioinformatics ; 23(1): 125-6, 2007 Jan 01.
Article in English | MEDLINE | ID: mdl-17077098

ABSTRACT

UNLABELLED: In order to understand and interpret phylogenetic and functional relationships between multiple prokaryotic species, qualitative and quantitative data must be correlated and displayed. GECO allows linear visualization of multiple genomes using a client/server based approach by dynamically creating .png- or .pdf-formatted images. It is able to display ortholog relations calculated using BLASTCLUST by color coding ortholog representations. Irregularities on the genomic level can be identified by anomalous G/C composition. Thus, this software will enable researchers to detect horizontally transferred genes, pseudogenes and insertions/deletions in related microbial genomes. AVAILABILITY: http://bioinfo.mikrobio.med.uni-giessen.de/geco2/GecoMainServlet


Subject(s)
Data Display , Genes, Bacterial , Genetics, Microbial/instrumentation , Software , Algorithms , Evolution, Molecular , Information Storage and Retrieval , Species Specificity , User-Computer Interface
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