Improving confidence in (Q)SAR predictions under Canada's Chemicals Management Plan - a chemical space approach.

One of the key challenges of Canada's Chemicals Management Plan (CMP) is assessing chemicals with limited/no empirical hazard data for their risk to human health. In some instances, these chemicals have not been tested broadly for their toxicological potency; as such, limited information exists on their potential to induce human health effects following exposure. Although (quantitative) structure activity relationship ((Q)SAR) models are able to generate predictions to address data gaps for certain toxicological endpoints, the confidence in predictions also needs to be addressed. One way to address this issue is to apply a chemical space approach. This approach uses international toxicological databases, for example, those available in the Organisation for Economic Co-operation and Development (OECD) QSAR Toolbox. The approach,assesses a model's ability to predict the potential hazards of chemicals that have limited hazard data that require assessment under the CMP when compared to a larger, data-rich chemical space that is structurally similar to chemicals of interest. This evaluation of a model's predictive ability makes (Q)SAR analysis more transparent and increases confidence in the application of these predictions in a risk-assessment context. Using this approach, predictions for such chemicals obtained from four (Q)SAR models were successfully classified into high, medium and low confidence levels to better inform their use in decision-making.

Intestinal myiasis.

PURPOSE: Intestinal myiasis is a condition when the fly larvae inhabit the gastrointestinal tract and are passed out in faeces. This type of infestation results when eggs or larvae of the fly, deposited on food are inadvertently taken by man. They survive the unfavourable conditions within the gastrointestinal tract and produce disturbances, which may vary from mild to severe. The condition is not uncommon and is often misdiagnosed as pinworm infestation. Correct diagnosis by the clinical microbiologist is important to avoid unnecessary treatment. MATERIALS AND METHODS: We had 7 cases of intestinal myiasis. In 2 cases the larvae were reared to adult fly in modified meat and sand medium (developed by Udgaonkar). This medium is simple and can be easily prepared in the laboratory. RESULTS: Of the 7 larvae, 5 were Sarcophaga haemorrhoidalis, 1 Megaselia species and 1 was identified as Muscina stabulans. CONCLUSIONS: S. haemorrhoidalis was the commonest maggot involved. A high index of suspicion is required for clinical diagnosis when the patient complains of passing wriggling worms in faeces for a long period without any response to antihelminthics. The reason for long duration of illness and recurrence of infestation is baffling. The nearest to cure was colonic wash. We feel prevention is of utmost importance, which is to avoid eating food articles with easy access to flies.

Integrated approach to assess the domain of applicability of some commercial (Q)SAR models.

An integrated framework of data analysis has been proposed to systematically address the determination of the domain of applicability (DA) of some commercial Quantitative Structure Activity Relationship ((Q)SAR) models based on the structure of test chemicals. This framework forms one of the important steps in dealing with the growing concerns on reliability of model-based predictions on toxicity of chemicals specifically in the regulatory context. The present study uses some of the well-known mutagenicity and carcinogenicity models that are available within the Casetox (MultiCASE Inc.) and TOPKAT (Accelrys Software Inc.) programs. The approach enumerated in this paper employs chemoinformatics tools that facilitate comparisons of key structural features as well as application of cluster analysis techniques. The approach has been illustrated using a set of eleven chemical structures selected from the Canadian Domestic Substances List (DSL) that are not present in the model training sets, and the efficacy of the approach has also been assessed using seven chemicals with known toxicities. The methodologies presented here could help address the issue of DA of complex (Q)SAR models and at the same time, serve as useful tools for regulators to make a preliminary assessment of (Q)SAR based systems thereby helping the process of hazard-based regulatory assessments of chemicals.

Influence of structural and functional modifications of selected genotoxic carcinogens on metabolism and mutagenicity - a review.

Alterations in molecular structure are responsible for the differential biological response(s) of a chemical inside a biosystem. Structural and functional parameters that govern a chemical's metabolic course and determine its ultimate outcome in terms of mutagenic/carcinogenic potential are extensively reviewed here. A large number of environmentally-significant organic chemicals are addressed under one or more broadly classified groups each representing one or more characteristic structural feature. Numerous examples are cited to illustrate the influence of key structural and functional parameters on the metabolism and DNA adduction properties of different chemicals. It is hoped that, in the event of limited experimental data on a chemical's bioactivity, such knowledge of the likely roles played by key molecular features should provide preliminary information regarding its bioactivation, detoxification and/or mutagenic potential and aid the process of screening and prioritising chemicals for further testing.

In silico techniques for the study and prediction of xenobiotic metabolism: a review.

Knowledge about metabolism is very important to understand the health risks posed by chemicals. The biochemical process of metabolism causes activation, inactivation, toxification, detoxification as well as changes in the physicochemical properties of a chemical. The long time consumption and high costs associated with animal tests and the challenges faced by traditional quantitative structure-activity relationship (QSAR) models in dealing with situations wherein parent chemical structures are less relevant to the ultimate effects have led to the development of in silico techniques for the prediction of xenobiotic metabolism. The strengths and limitations of some of the most commonly used in silico expert systems, and their application in studying metabolism of xenobiotic chemicals, have been reviewed. The in silico metabolism simulators possessed several distinguishing features imparted in part by the nature of knowledge rules (algorithms) encoded within them and in part by the integration of QSAR libraries and computational engines.

Quantitative structure-activity relationships based on functional and structural characteristics of organic compounds.

In the present quantitative structure-activity relationship (QSAR) modeling, organic compounds, including priority pollutants, have been considered and classified based on their functional and structural characteristics. Five physico-chemical characteristics have been used to develop a QSAR model for Pimephales promelas, by means of multiple regression analysis. Collinearity diagnostics was carried out using two different approaches based on condition index and K correlation index. The outlier analysis was carried out using the variable subsets obtained through both the approaches. An attempt has been made to justify the deletion of outliers in each group referring to their physico-chemical characteristics. The expressions obtained by using both approaches provide almost the same prediction accuracy, however, the latter approach resulted in expressions with reduced number of molecular descriptors. The QSARs obtained through this exercise would certainly assist in designing environment-friendly molecules with lower toxicity.

Immunocytochemical localization of bioregulatory peptides in marmoset testes.

Immunocytochemical localization of neuropeptides (beta-endorphin, substance P, arginine vasopressin, oxytocin), pituitary hormones (adrenocorticotropin, prolactin, growth hormone, follicle stimulating hormone (FSH), gonadal inhibin, gastrin, and human chorionic gonadotrophin (hCG)) was carried out in marmoset testis during development. Both intensity of immunostaining and distribution of these peptides in testicular compartments viz. seminiferous tubules and Leydig cells changed dramatically during development. In vitro biosynthesis of inhibin and FSH was increased by hCG, whereas prolactin (5 micrograms) and prostatic inhibin peptide suppressed the synthesis of these hormones.

Disseminated nocardiosis.

A middle aged female suffering from idiopathic thrombocytopenic purpura (ITP), on treatment with steroids, developed bronchopneumonia and pyopneumothorax due to opportunistic infection by Nocardia asteroides. Aspirates obtained from the lungs, liver, spleen, kidneys and bone marrow were positive for Nocardia asteroides, confirming disseminated infection in an immunocompromised host. The patient succumbed to the infection.

FSH in testes of marmosets during development: immunocytochemical localization and de novo biosynthesis.

Immunocytochemical localization of FSH was carried out in various cell types of marmoset testes during development using antisera generated against intact as well as beta-subunit of human FSH. Significant differences in the intensity as well as distribution of FSH in various cell types were observed in neonatal, pubertal, and adult marmosets. Intensity of staining in Leydig cells was maximum at day 1 and in adults (1-3 years), whereas it was minimum at 3 months. In seminiferous tubules (Sertoli cells), FSH was present in trace amount until puberty and subsequently increased at maturity. Further studies demonstrate de novo biosynthesis of FSH-like moiety in vitro by testicular tissue, which was age dependent.

Cellular distribution of inhibin in marmoset testes during development.

Using polyclonal antibodies against a 13 KD human testicular inhibin, immunocytochemical localization studies were carried out in marmoset monkey testes. The pattern as well as the intensity of immunocytochemical staining for inhibin vary substantially during development. In early development (day 1 to 2 months) Leydig cells are the predominant cell types showing intense staining which reaches its nadir at 3 months. Subsequently both Sertoli cells as well as Leydig cells show equal intensity of inhibin staining. Testicular inhibin is likely to play a vital role in cell to cell communication.

Prostate--an extrapituitary source of follicle-stimulating hormone (FSH): occurrence, localization, and de novo biosynthesis and its hormonal modulation in primates and rodents.

A comparative study on the immunocytochemical localization, de novo biosynthesis, and hormonal modulation of follicle-stimulating hormone (FSH) was carried out in the prostates of man, monkey, dog, guinea pig, hamster, rat, and mouse. FSH was localized in the cytoplasm of the prostatic epithelial cells. In some specimens, staining was also observed in the nucleus. Both pituitary as well as prostatic FSH were coeluted on a Sephadex G-100 column and high-performance liquid chromatography (HPLC) indicating physicochemical similarities of FSH in both the tissues. Surprisingly, the modulation of pituitary and prostatic FSH by inhibin and its related peptides were comparable. The intensity and grandularity of FSH staining was stronger in the case of benign prostatic hyperplasia as compared with normal prostatic specimens. In view of the well-known effects of FSH on the cellular growth, differentiation, and function of gonadal tissues, a similar role for FSH in pathophysiology of prostate is postulated.

Primary intramuscular cold abscess in the left deltoid region: a case report.

A case of primary intramuscular cold abscess in the left deltoid region is described. There was no underlying bone lesion in relation to cervical or thoracic spine, shoulder joint or upper humerus, and clavicle. It is postulated that the cold abscess might have developed as a result of reactivation of BCG lesion when the patient received a fresh dose of tubercular bacilli which produced only lymph node enlargement in the mediastinum because of the partial immunity the patient had.

Model of an oculomotor subsystem.

One of the complex control systems present in the human body is the oculomotor control system. There are two major modes of ocular movements, viz. saccadic and smooth pursuit. More knowledge about the neuromuscular mechanisms controlling these eye movements is obtained if experiments are carried out on subjects whose two types of eye movements are differentially affected due to disorders at their higher centres of control. Eye movements of patients with a novel form of Heredo-familial Spinocerebellar Degeneration have been measured and quantified. These have been compared with those of normal subjects. Subsequent analysis indicates a continuous fourth order transfer function for the smooth pursuit eye-in-skull movements in the horizontal plane with head stationary.