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1.
Contemp Clin Trials ; 62: 159-167, 2017 11.
Article in English | MEDLINE | ID: mdl-28887069

ABSTRACT

BACKGROUND: Chronic Obstructive Pulmonary Disease (COPD) is a leading cause of hospitalizations. Interventional studies focusing on the hospital-to-home transition for COPD patients are few. In the BREATHE (Better Respiratory Education and Treatment Help Empower) study, we developed and tested a patient and family-centered transitional care program that helps prepare hospitalized COPD patients and their family caregivers to manage COPD at home. METHODS: In the study's initial phase, we co-developed the BREATHE transitional care program with COPD patients, family-caregivers, and stakeholders. The program offers tailored services to address individual patients' needs and priorities at the hospital and for 3months post discharge. We tested the program in a single-blinded RCT with 240 COPD patients who were randomized to receive the program or 'usual care'. Program participants were offered the opportunity to invite a family caregiver, if available, to enroll with them into the study. The primary outcomes were the combined number of COPD-related hospitalizations and Emergency Department (ED) visits per participant at 6months post discharge, and the change in health-related quality of life over the 6months study period. Other measures include 'all cause' hospitalizations and ED visits; patient activation; self-efficacy; and, self-care behaviors. DISCUSSION: Unlike 1month transitional care programs that focus on patients' post-acute care needs, the BREATHE program helps hospitalized COPD patients manage the post discharge period as well as prepare them for long term self-management of COPD. If proven effective, this program may offer a timely solution for hospitals in their attempts to reduce COPD rehospitalizations.


Subject(s)
Emergency Service, Hospital/statistics & numerical data , Hospitalization/statistics & numerical data , Patient-Centered Care/organization & administration , Transitional Care/organization & administration , Age Factors , Aged , Community Health Services/organization & administration , Family , Female , Humans , Male , Middle Aged , Patient Care Team/organization & administration , Patient Education as Topic/organization & administration , Pilot Projects , Pulmonary Disease, Chronic Obstructive/therapy , Quality of Life , Research Design , Self Care , Self Efficacy , Sex Factors , Single-Blind Method , Socioeconomic Factors
2.
Nature ; 477(7366): 570-3, 2011 Sep 29.
Article in English | MEDLINE | ID: mdl-21918514

ABSTRACT

Delta Scuti (δSct) stars are opacity-driven pulsators with masses of 1.5-2.5 M⊙, their pulsations resulting from the varying ionization of helium. In less massive stars such as the Sun, convection transports mass and energy through the outer 30 per cent of the star and excites a rich spectrum of resonant acoustic modes. Based on the solar example, with no firm theoretical basis, models predict that the convective envelope in δSct stars extends only about 1 per cent of the radius, but with sufficient energy to excite solar-like oscillations. This was not observed before the Kepler mission, so the presence of a convective envelope in the models has been questioned. Here we report the detection of solar-like oscillations in the δSct star HD187547, implying that surface convection operates efficiently in stars about twice as massive as the Sun, as the ad hoc models predicted.

3.
Br J Cancer ; 100(9): 1385-92, 2009 May 05.
Article in English | MEDLINE | ID: mdl-19401698

ABSTRACT

Hepatocellular carcinoma (HCC) is a highly vascular tumour that expresses vascular endothelial growth factor (VEGF). Various studies have evaluated the prognostic value of VEGF levels in HCC. Its overall test performance remains unclear, however. The aim was to perform a systematic review and meta-analysis of prognostic cohort studies evaluating the use of VEGF as a predictor of survival in patients with treated HCC. Eligible studies were identified through multiple search strategies. Studies were assessed for quality using the Newcastle-Ottawa Tool. Data were collected comparing disease-free and overall survival in patients with high VEGF levels as compared to those with low levels. Studies were pooled and summary hazard ratios were calculated. A total of 16 studies were included for meta-analysis (8 for tissue and 8 for serum). Methodological analysis indicated a trend for higher study quality with serum studies as compared to tissue-based investigations. Four distinct groups were pooled for analysis: tissue overall survival (n=251), tissue disease-free survival (n=413), serum overall survival (n=579), and serum disease-free survival (n=439). High tissue VEGF levels predicted poor overall (HR=2.15, 95% CI: 1.26-3.68) and disease-free (HR=1.69, 95% CI: 1.23-2.33) survival. Similarly, high serum VEGF levels predicted poor overall (HR=2.35, 95% CI: 1.80-3.07) and disease-free (HR=2.36, 95% CI 1.76-3.16) survival. A high degree of inter-study consistency was present in three of four groups analysed. Tissue and serum VEGF levels appear to have significant predictive ability for estimating overall survival in HCC and may be useful for defining prognosis in HCC.


Subject(s)
Carcinoma, Hepatocellular/diagnosis , Liver Neoplasms/diagnosis , Vascular Endothelial Growth Factor A/blood , Carcinoma, Hepatocellular/blood , Carcinoma, Hepatocellular/drug therapy , Carcinoma, Hepatocellular/mortality , Disease-Free Survival , Humans , Liver Neoplasms/blood , Liver Neoplasms/drug therapy , Liver Neoplasms/mortality , Predictive Value of Tests , Prognosis , Survival Analysis
4.
Nature ; 449(7159): 189-91, 2007 Sep 13.
Article in English | MEDLINE | ID: mdl-17851517

ABSTRACT

After the initial discoveries fifteen years ago, over 200 extrasolar planets have now been detected. Most of them orbit main-sequence stars similar to our Sun, although a few planets orbiting red giant stars have been recently found. When the hydrogen in their cores runs out, main-sequence stars undergo an expansion into red-giant stars. This expansion can modify the orbits of planets and can easily reach and engulf the inner planets. The same will happen to the planets of our Solar System in about five billion years and the fate of the Earth is matter of debate. Here we report the discovery of a planetary-mass body (Msini = 3.2M(Jupiter)) orbiting the star V 391 Pegasi at a distance of about 1.7 astronomical units (au), with a period of 3.2 years. This star is on the extreme horizontal branch of the Hertzsprung-Russell diagram, burning helium in its core and pulsating. The maximum radius of the red-giant precursor of V 391 Pegasi may have reached 0.7 au, while the orbital distance of the planet during the stellar main-sequence phase is estimated to be about 1 au. This detection of a planet orbiting a post-red-giant star demonstrates that planets with orbital distances of less than 2 au can survive the red-giant expansion of their parent stars.

5.
Arch Biochem Biophys ; 394(1): 76-86, 2001 Oct 01.
Article in English | MEDLINE | ID: mdl-11566030

ABSTRACT

Desulfovibrio vulgaris rubredoxin, which contains a single [Fe(SCys)4] site, is shown to be a catalytically competent electron donor to two enzymes from the same organism, namely, rubrerythrin and two-iron superoxide reductase (a.k.a. rubredoxin oxidoreductase or desulfoferrodoxin). These two enzymes have been implicated in catalytic reduction of hydrogen peroxide and superoxide, respectively, during periods of oxidative stress in D. vulgaris, but their proximal electron donors had not been characterized. We further demonstrate the incorrectness of a previous report that rubredoxin is not an electron donor to the superoxide reductase and describe convenient assays for demonstrating the catalytic competence of all three proteins in their respective functions. Rubrerythrin is shown to be an efficient rubredoxin peroxidase in which the rubedoxin:hydrogen peroxide redox stoichiometry is 2:1 mol:mol. Using spinach ferredoxin-NADP+ oxidoreductase (FNR) as an artificial, but proficient, NADPH:rubredoxin reductase, rubredoxin was further found to catalyze rapid and complete reduction of all Fe3+ to Fe2+ in rubrerythrin by NADPH under anaerobic conditions. The combined system, FNR/rubredoxin/rubrerythrin, was shown to function as a catalytically competent NADPH peroxidase. Another small rubredoxin-like D. vulgaris protein, Rdl, could not substitute for rubredoxin as a peroxidase substrate of rubrerythrin. Similarly, D. vulgaris rubredoxin was demonstrated to efficiently catalyze reduction of D. vulgaris two-iron superoxide reductase and, when combined with FNR, to function as an NADPH:superoxide oxidoreductase. We suggest that, during periods of oxidative stress, rubredoxin could divert electron flow from the electron transport chain of D. vulgaris to rubrerythrin and superoxide reductase, thereby simultaneously protecting autoxidizable redox enzymes and lowering intracellular hydrogen peroxide and superoxide levels.


Subject(s)
Bacterial Proteins/metabolism , Desulfovibrio vulgaris/metabolism , Ferredoxins/metabolism , NADH, NADPH Oxidoreductases/metabolism , Oxidative Stress , Rubredoxins/metabolism , Binding Sites , Catalysis , Desulfovibrio vulgaris/enzymology , Dimerization , Electron Transport , Electrons , Hemerythrin , Hydrogen Peroxide/metabolism , Kinetics , NADP/metabolism , Oxidation-Reduction , Peroxidases/metabolism , Reducing Agents/metabolism
6.
Rhinology ; 39(2): 84-7, 2001 Jun.
Article in English | MEDLINE | ID: mdl-11486444

ABSTRACT

This paper describes the effects that nasal dilators have on olfactory ability. Experimental results demonstrate that nasal dilators increase odorant identification, lower odorant threshold, and increase perceptual odorant intensity. In other experiments, magnetic resonance imaging (MRI) data demonstrates that the size of the nasal cavity especially around the region of the nasal valve is increased when nasal dilators are worn. Additionally, pneumotachograph data demonstrates that during a sniff, the peak flow, maximum flow rate, volume, and duration are all increased when nasal dilators are worn. Taken together, the increase in olfactory ability can most easily be explained by an increase in both the amount and the proportion of inspired odorant molecules that are directed to the olfactory mucosa and are, therefore, available for odorant perception.


Subject(s)
Dilatation/methods , Nose/anatomy & histology , Perception/physiology , Smell/physiology , Adult , Female , Humans , Male , Middle Aged , Nose/physiology , Odorants , Sensory Thresholds/physiology
7.
Invest Ophthalmol Vis Sci ; 42(8): 1728-35, 2001 Jul.
Article in English | MEDLINE | ID: mdl-11431435

ABSTRACT

PURPOSE: To evaluate the cycloplegic effect of 1% tropicamide in myopic children and to determine whether its efficacy is associated with age, gender, iris color, ethnicity, magnitude of the refractive error, or latent error. METHODS: Four hundred sixty-nine children enrolled in the Correction of Myopia Evaluation Trial (COMET; a multicenter, randomized, double-masked clinical trial evaluating the rate of progression of juvenile-onset myopia in children wearing progressive-addition versus single-vision lenses) were given 1 drop of proparacaine in each eye followed 1 minute later by 1 drop of 1% tropicamide and then a second drop of 1% tropicamide 4 to 6 minutes later. Five accommodative responses to 20/100 letters located at 4 m and 33 cm were obtained in each eye with an autorefractor, 20 minutes after the second drop. Residual accommodation was calculated as the difference between the mean spherical equivalent responses obtained at the two distances. An examiner graded iris color, and ethnicity was reported by the children's parents or guardians. RESULTS: The mean residual accommodation was small: 0.38 +/- 0.41 diopters (D) in the right eye and 0.30 +/- 0.41 D in the left eye. Small but statistically significant differences in residual accommodation were associated with ethnicity, but not with any of the other factors. CONCLUSIONS: Tropicamide (1%) is an effective cycloplegic agent in myopic children.


Subject(s)
Mydriatics/administration & dosage , Myopia/complications , Pupil/drug effects , Tropicamide/administration & dosage , Accommodation, Ocular/drug effects , Accommodation, Ocular/physiology , Age Factors , Child , Double-Blind Method , Ethnicity , Eye Color , Eyeglasses , Female , Humans , Male , Myopia/physiopathology , Myopia/therapy , Ophthalmic Solutions , Pupil/physiology , Refraction, Ocular/physiology , Sex Factors
8.
J Biol Inorg Chem ; 6(4): 418-29, 2001 Apr.
Article in English | MEDLINE | ID: mdl-11372200

ABSTRACT

Reported are the X-ray crystal structures of recombinant Phascolopsis gouldii methemerythrin (1.8-A resolution) and the structure of an O2-binding-pocket mutant, L98Y methemerythrin (2.1-A resolution). The L98Y hemerythrin (Hr) has a greatly enhanced O2 affinity, a slower O2 dissociation rate, a larger solvent deuterium isotope effect on this rate, and a greater resistance to autoxidation relative to the wild-type protein. The crystal structures show that the hydrophobic binding pocket of Hr can accommodate substitution of a leucyl by a tyrosyl side chain with relatively minor structural rearrangements. UV/vis and resonance Raman spectra show that in solution L98Y methemerythrin contains a mixture of two diiron site structures differing by the absence or presence of an Fe(III)-coordinated phenolate. However, in the crystal, only one L98Y diiron site structure is seen, in which the Y98 hydroxyl is not a ligand, but instead forms a hydrogen bond to a terminal hydroxo/aqua ligand to the nearest iron. Based on this crystal structure, we propose that in the oxy form of L98Y hemerythrin the non-polar nature of the binding pocket favors localization of the Y98 hydroxyl near the O2 binding site, where it can donate a hydrogen bond to the hydroperoxo ligand. The stabilizing Y98OH-O2H-interaction would account for all of the altered O2 binding properties of L98Y Hr listed above.


Subject(s)
Hemerythrin/chemistry , Hemerythrin/metabolism , Nematoda/enzymology , Animals , Binding Sites , Crystallography, X-Ray , Hemerythrin/genetics , Models, Molecular , Oxygen/metabolism , Protein Conformation , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Spectrophotometry, Ultraviolet , Spectrum Analysis, Raman
9.
J Biol Inorg Chem ; 6(2): 201-6, 2001 Feb.
Article in English | MEDLINE | ID: mdl-11293415

ABSTRACT

The rate of production of Clostridium pasteurianum rubredoxin overexpressed in Escherichia coli was examined by electrospray ionization-Fourier transform ion cyclotron resonance (ESI-FTICR) mass spectrometry. Previous work had shown that this heterologous expression resulted in isolation of both iron-containing (FeRd) and zinc-containing (ZnRd) rubredoxins. In the present work, minimally processed cell lysates of E. coli were analyzed in order to monitor the production of FeRd and ZnRd. The sensitivity of the measurement favored FeRd relative to ZnRd, and this differential sensitivity was quantitated using previously separated and purified rubredoxins. A time course study indicated that ZnRd and FeRd are produced simultaneously during overexpression, but at different rates. The ratio of the concentration of ZnRd to FeRd increased in a linear fashion during 3 h following induction of overexpression. Since only FeRds have been reported from native bacteria and archaea, the data suggest that either Zn2+ is sequestered from rubredoxins during native biosynthesis or that ZnRds may have escaped detection in the native microorganisms. ESI-FTICR mass spectrometry is shown to be a useful tool for monitoring metal insertion during protein biosynthesis.


Subject(s)
Rubredoxins/metabolism , Spectrometry, Mass, Electrospray Ionization/instrumentation , Trace Elements/metabolism , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Escherichia coli , Iron/metabolism , Kinetics , Rubredoxins/chemistry , Rubredoxins/genetics , Sensitivity and Specificity , Spectrometry, Mass, Electrospray Ionization/methods , Transduction, Genetic , Zinc/metabolism
10.
Physiol Behav ; 72(4): 595-602, 2001 Mar.
Article in English | MEDLINE | ID: mdl-11282145

ABSTRACT

The odorant confusion matrix (OCM) is an odorant identification test in which the number of correct odorant identifications quantifies the level of olfactory function. As with other confusion matrices, the OCM reflects distortions of sensory perception as errors in identification. Previous work with the OCM suggests that, within an individual, hyposmia is associated with a stable shift in odorant perception. The current study examined whether consistent shifts in odorant perception are also characteristic of the various pathologies that lead to an olfactory loss. In a retrospective study, OCM response patterns for 135 hyposmic patients were fit into a five-dimensional space in which the distances between subjects reflected the dissimilarities between their OCM response patterns. Multivariate regression was performed relating position in the five-dimensional space to each of 11 factors representing 33 demographic and medical history variables. One factor, named congestion (gathering the variables of past polyposis, current polyposis, and current nasal obstruction due to swelling), was significantly indicative of patterns of responses on the OCM, independent of the level of hyposmia. These data suggest that conductive olfactory loss may be associated with alterations in odorant perception, which are reflected in consistent odorant confusions. Such alterations in perception may eventually serve as a basis for a clinical test to provide differential diagnoses as to the sources of olfactory losses.


Subject(s)
Odorants , Olfaction Disorders/diagnosis , Olfaction Disorders/psychology , Smell/physiology , Adolescent , Adult , Aged , Aged, 80 and over , Child , Female , Humans , Male , Middle Aged , Multivariate Analysis , Psychophysics , Retrospective Studies
11.
J Bacteriol ; 183(5): 1560-7, 2001 Mar.
Article in English | MEDLINE | ID: mdl-11160086

ABSTRACT

A five-gene cluster encoding four nonheme iron proteins and a flavoprotein from the thermophilic anaerobic bacterium Clostridium thermoaceticum (Moorella thermoacetica) was cloned and sequenced. Based on analysis of deduced amino acid sequences, the genes were identified as rub (rubredoxin), rbo (rubredoxin oxidoreductase), rbr (rubrerythrin), fprA (type A flavoprotein), and a gene referred to as hrb (high-molecular-weight rubredoxin). Northern blot analysis demonstrated that the five-gene cluster is organized as two subclusters, consisting of two divergently transcribed operons, rbr-fprA-hrb and rbo-rub. The rbr, fprA, and rub genes were expressed in Escherichia coli, and their encoded recombinant proteins were purified. The molecular masses, UV-visible absorption spectra, and cofactor contents of the recombinant rubrerythrin, rubredoxin, and type A flavoprotein were similar to those of respective homologs from other microorganisms. Antibodies raised against Desulfovibrio vulgaris Rbr reacted with both native and recombinant Rbr from C. thermoaceticum, indicating that this protein was expressed in the native organism. Since Rbr and Rbo have been recently implicated in oxidative stress protection in several anaerobic bacteria and archaea, we suggest a similar function of these proteins in oxygen tolerance of C. thermoaceticum.


Subject(s)
Bacterial Proteins/genetics , Clostridium/genetics , Ferredoxins/genetics , Flavoproteins/genetics , NADH, NADPH Oxidoreductases/genetics , Rubredoxins/genetics , Amino Acid Sequence , Bacterial Proteins/metabolism , Blotting, Northern , Blotting, Western , Cloning, Molecular , Clostridium/metabolism , Escherichia coli/genetics , Escherichia coli/metabolism , Ferredoxins/metabolism , Flavoproteins/metabolism , Gene Expression Regulation, Bacterial/genetics , Hemerythrin , Molecular Sequence Data , Multigene Family , NADH, NADPH Oxidoreductases/metabolism , Operon , Oxidative Stress/genetics , Promoter Regions, Genetic , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Rubredoxins/metabolism , Sequence Analysis, DNA
12.
J Bacteriol ; 183(1): 101-8, 2001 Jan.
Article in English | MEDLINE | ID: mdl-11114906

ABSTRACT

Evidence is presented for an alternative to the superoxide dismutase (SOD)-catalase oxidative stress defense system in Desulfovibrio vulgaris (strain Hildenborough). This alternative system consists of the nonheme iron proteins, rubrerythrin (Rbr) and rubredoxin oxidoreductase (Rbo), the product of the rbo gene (also called desulfoferrodoxin). A Deltarbo strain of D. vulgaris was found to be more sensitive to internal superoxide exposure than was the wild type. Unlike Rbo, expression of plasmid-borne Rbr failed to restore the aerobic growth of a SOD-deficient strain of Escherichia coli. Conversely, plasmid-borne expression of two different Rbrs from D. vulgaris increased the viability of a catalase-deficient strain of E. coli that had been exposed to hydrogen peroxide whereas Rbo actually decreased the viability. A previously undescribed D. vulgaris gene was found to encode a protein having 50% sequence identity to that of E. coli Fe-SOD. This gene also encoded an extended N-terminal sequence with high homologies to export signal peptides of periplasmic redox proteins. The SOD activity of D. vulgaris is not affected by the absence of Rbo and is concentrated in the periplasmic fraction of cell extracts. These results are consistent with a superoxide reductase rather than SOD activity of Rbo and with a peroxidase activity of Rbr. A joint role for Rbo and Rbr as a novel cytoplasmic oxidative stress protection system in D. vulgaris and other anaerobic microorganisms is proposed.


Subject(s)
Bacterial Proteins/metabolism , Desulfovibrio vulgaris/metabolism , Ferredoxins/metabolism , Iron-Binding Proteins , NADH, NADPH Oxidoreductases/metabolism , Oxidative Stress , Amino Acid Sequence , Bacterial Proteins/genetics , Carrier Proteins/genetics , Carrier Proteins/metabolism , Desulfovibrio vulgaris/enzymology , Desulfovibrio vulgaris/genetics , Desulfovibrio vulgaris/growth & development , Escherichia coli/enzymology , Ferredoxins/genetics , Genes, Bacterial , Genetic Complementation Test , Hemerythrin , Hydrogen Peroxide/pharmacology , Molecular Sequence Data , NADH, NADPH Oxidoreductases/genetics , Oxidoreductases/genetics , Oxidoreductases/metabolism , Periplasm/enzymology , Rubredoxins , Superoxide Dismutase/chemistry , Superoxide Dismutase/metabolism , Superoxides/pharmacology
13.
J Bacteriol ; 183(1): 109-18, 2001 Jan.
Article in English | MEDLINE | ID: mdl-11114907

ABSTRACT

The two-component anthranilate 1,2-dioxygenase of the bacterium Acinetobacter sp. strain ADP1 was expressed in Escherichia coli and purified to homogeneity. This enzyme converts anthranilate (2-aminobenzoate) to catechol with insertion of both atoms of O(2) and consumption of one NADH. The terminal oxygenase component formed an alpha(3)beta(3) hexamer of 54- and 19-kDa subunits. Biochemical analyses demonstrated one Rieske-type [2Fe-2S] center and one mononuclear nonheme iron center in each large oxygenase subunit. The reductase component, which transfers electrons from NADH to the oxygenase component, was found to contain approximately one flavin adenine dinucleotide and one ferredoxin-type [2Fe-2S] center per 39-kDa monomer. Activities of the combined components were measured as rates and quantities of NADH oxidation, substrate disappearance, product appearance, and O(2) consumption. Anthranilate conversion to catechol was stoichiometrically coupled to NADH oxidation and O(2) consumption. The substrate analog benzoate was converted to a nonaromatic benzoate 1,2-diol with similarly tight coupling. This latter activity is identical to that of the related benzoate 1, 2-dioxygenase. A variant anthranilate 1,2-dioxygenase, previously found to convey temperature sensitivity in vivo because of a methionine-to-lysine change in the large oxygenase subunit, was purified and characterized. The purified M43K variant, however, did not hydroxylate anthranilate or benzoate at either the permissive (23 degrees C) or nonpermissive (39 degrees C) growth temperatures. The wild-type anthranilate 1,2-dioxygenase did not efficiently hydroxylate methylated or halogenated benzoates, despite its sequence similarity to broad-substrate specific dioxygenases that do. Phylogenetic trees of the alpha and beta subunits of these terminal dioxygenases that act on natural and xenobiotic substrates indicated that the subunits of each terminal oxygenase evolved from a common ancestral two-subunit component.


Subject(s)
Acinetobacter/enzymology , Evolution, Molecular , Mixed Function Oxygenases/genetics , Mixed Function Oxygenases/metabolism , Acinetobacter/genetics , Amino Acid Sequence , Benzoates/metabolism , Catalysis , Electron Spin Resonance Spectroscopy/methods , Escherichia coli/enzymology , Escherichia coli/genetics , Flavins/analysis , Iron/analysis , Mixed Function Oxygenases/chemistry , Mixed Function Oxygenases/isolation & purification , Molecular Sequence Data , Phylogeny , Plasmids , Substrate Specificity , Temperature , ortho-Aminobenzoates/metabolism
14.
Cell Biol Toxicol ; 16(4): 257-73, 2000.
Article in English | MEDLINE | ID: mdl-11101007

ABSTRACT

Dichloroacetate (DCA) and trichloroacetate (TCA) are metabolites of the environmental contaminant trichloroethylene (TCE) that are thought to be responsible for its hepatocarcinogenicity in B6C3F1 mice. TCA and DCA induce peroxisomal proliferation and are mitogenic in rodent liver. The susceptibility of humans to TCA- and DCA-induced hepatocarcinogenesis is unknown. The current studies were aimed at using both primary and long-term human hepatocyte cultures to study the effects of TCA, DCA, and a potent peroxisome, proliferator, WY-14,643, on peroxisomal activity and DNA synthesis in human hepatocytes. Peroxisome proliferation, as assessed by palmitoyl-CoA oxidation activity, was below the limit of detection in all human cell lines tested. However, the human cell lines did display small but significant increases in CYP450 4A1 1 levels following treatment with WY-14,643 (0.1 mmol/L), indicating that the CYP 4A11 gene may be regulated by peroxisome proliferator-activated receptor alpha in humans. Similarly to their effect in rodent hepatocyte cultures, TCA and DCA were not complete mitogens in human hepatocyte cultures. In fact, DNA synthesis tended to be significantly decreased following treatment of the cells with WY-14,643, TCA, or DCA. In contrast to rodent hepatocyte responses, TCA and DCA did not increase palmitoyl-CoA oxidation and caused a decrease in DNA synthesis in human hepatocyte cultures, suggesting that humans may not be susceptible to TCA- and DCA-induced hepatocarcinogenesis.


Subject(s)
DNA/biosynthesis , Dichloroacetic Acid/pharmacology , Hepatocytes/drug effects , Peroxisome Proliferators/pharmacology , Peroxisomes/drug effects , Pyrimidines/pharmacology , Trichloroacetic Acid/pharmacology , Trichloroethylene/pharmacokinetics , Animals , Cell Division/drug effects , Cells, Cultured , Hepatocytes/cytology , Hepatocytes/metabolism , Humans , Liver/cytology , Mice , Palmitoyl Coenzyme A/metabolism , Peroxisomes/physiology , Peroxisomes/ultrastructure
15.
Nature ; 408(6814): 816-20, 2000 Dec 14.
Article in English | MEDLINE | ID: mdl-11130712

ABSTRACT

The genome of the flowering plant Arabidopsis thaliana has five chromosomes. Here we report the sequence of the largest, chromosome 1, in two contigs of around 14.2 and 14.6 megabases. The contigs extend from the telomeres to the centromeric borders, regions rich in transposons, retrotransposons and repetitive elements such as the 180-base-pair repeat. The chromosome represents 25% of the genome and contains about 6,850 open reading frames, 236 transfer RNAs (tRNAs) and 12 small nuclear RNAs. There are two clusters of tRNA genes at different places on the chromosome. One consists of 27 tRNA(Pro) genes and the other contains 27 tandem repeats of tRNA(Tyr)-tRNA(Tyr)-tRNA(Ser) genes. Chromosome 1 contains about 300 gene families with clustered duplications. There are also many repeat elements, representing 8% of the sequence.


Subject(s)
Arabidopsis/genetics , Genome, Plant , Chromosome Mapping , DNA, Plant , Gene Duplication , Molecular Sequence Data , Multigene Family , Plant Proteins/genetics , RNA, Transfer/genetics
16.
J Lipid Res ; 41(12): 2063-70, 2000 Dec.
Article in English | MEDLINE | ID: mdl-11108740

ABSTRACT

Type 1 diabetes mellitus is a devastating disorder affecting both glucose and lipid metabolism. Using the nonobese diabetic (NOD) mouse model, we found that diabetic mice had a liver-specific increase in steady state mRNA levels for enzymes involved in oxidation of fatty acids. Increased mRNA abundance was observed in very long-chain acyl-CoA dehydrogenase, long-chain acyl-CoA dehydrogenase (LCAD), medium-chain acyl-CoA dehydrogenase (MCAD), carnitine palmitoyltransferase I (CPT-1a), and the gluconeogenic enzyme phosphoenolpyruvate carboxykinase, whereas short-chain acyl-CoA dehydrogenase mRNA remained unchanged. In contrast, minimal elevations in LCAD and CPT-1a mRNA were observed in hearts of diabetic mice with no significant differences found for the other enzymes. We developed NOD mice with transgenes containing regulatory elements of human MCAD gene controlling a reporter gene to determine if the increase in MCAD gene expression occurred via the well-characterized nuclear receptor response element (NRRE-1). These results demonstrated that the transgene containing the NRRE-1 and adjacent 5' sequences had elevated liver expression in diabetic mice compared with prediabetic or normal control mice. Surprisingly, the transgene that contains NRRE-1 with adjacent 3' sequences and the transgene with the NRRE-1 deleted showed minimal response to the fulminant diabetic condition.Collectively, these results indicate that in type 1 diabetes there exists an excessive and liver-specific activation of fatty acid oxidation gene expression. Using human MCAD as a prototype gene, we have shown that this increased expression is mediated at the transcriptional level but does not occur via the well-characterized NRRE-1 site responsible for baseline expression in normal mice.


Subject(s)
Diabetes Mellitus, Type 1/metabolism , Fatty Acids/metabolism , Acyl-CoA Dehydrogenase, Long-Chain/genetics , Acyl-CoA Dehydrogenase, Long-Chain/metabolism , Animals , Base Sequence , Chloramphenicol O-Acetyltransferase/genetics , DNA , Diabetes Mellitus, Type 1/enzymology , Diabetes Mellitus, Type 1/genetics , Mice , Mice, Inbred NOD , Mice, Transgenic , Molecular Sequence Data , Oxidation-Reduction , RNA, Messenger/genetics , RNA, Messenger/metabolism , Regulatory Sequences, Nucleic Acid
17.
Percept Psychophys ; 62(5): 1121-9, 2000 Jul.
Article in English | MEDLINE | ID: mdl-10997054

ABSTRACT

Perceptual spaces, in which similar stimuli are located close to each other and dissimilar stimuli are located far apart, have aided in the understanding of the physiological and psychological bases for sensory quality coding. Differences in perception between individuals should be reflected by differences in the spatial relationships between stimuli. If the dimensionality of the perceptual space is small (e.g., color space), individual differences that reflect specific pathologies are readily apparent from visual inspection. On the other hand, if the dimensionality of the perceptual space is large (as is proposed for odor space), visual inspection alone may not reveal individual differences in quality perception. The present work presents an information-theory-based method for quantifying individual differences in quality perception from perceptual confusion matrices. The ability of this method to quantify individual differences in quality perception is shown in a hypothetical example of specific anosmia. Finally, the method is applied to the examination of intrasubject consistency of odorant quality perception.


Subject(s)
Individuality , Odorants , Smell , Adult , Aged , Female , Humans , Male , Middle Aged , Olfaction Disorders/diagnosis , Olfaction Disorders/psychology , Psychophysics , Sensory Thresholds
18.
J Foot Ankle Surg ; 39(4): 249-52, 2000.
Article in English | MEDLINE | ID: mdl-10949805

ABSTRACT

Papillary eccrine adenoma is a rare, slow-growing cutaneous tumor of sweat gland origin. It is a benign lesion that occurs most often in the distal extremities. Only 33 cases have been reported in the literature with few located in the distal lower extremity. There have been no cases reported in the podiatric literature. The clinical and surgical history of a case report of a papillary eccrine adenoma in a 35-year-old white male is presented.


Subject(s)
Adenoma, Sweat Gland/diagnosis , Adenoma, Sweat Gland/surgery , Heel , Sweat Gland Neoplasms/diagnosis , Sweat Gland Neoplasms/surgery , Adult , Biopsy, Needle , Follow-Up Studies , Humans , Magnetic Resonance Imaging , Male , Photomicrography , Skin Transplantation , Treatment Outcome
19.
Carcinogenesis ; 21(8): 1623-7, 2000 Aug.
Article in English | MEDLINE | ID: mdl-10910968

ABSTRACT

To develop animal models that represent the broad spectrum of human prostate cancer, we created transgenic mice with targeted prostate-specific expression of two genes (ECO:RI and c-fos) implicated in the induction of genomic instability. Expression of the transgenes was restricted to prostate epithelial cells by coupling them to the tissue-specific, hormonally regulated probasin promoter (PB). The effects of transgene expression were examined histologically in prostate sections at time points taken from 4 to 24 months of age. The progressive presence of regions of mild-to-severe hyperplasia, low- and high-grade prostatic intra-epithelial neoplasia, and well-differentiated adenocarcinoma was observed in both PBECO:RI lines but no significant pathology was detected in the PBfos line. Prostate tissue of PBECO:RI mice was examined for expression of p53, proliferating cell nuclear antigen (PCNA) and Ki67 at multiple time points. Although p53 does not appear to be mutated, levels of PCNA and Ki67 are elevated and correlate with the severity of the prostatic lesions. Overall, pre-neoplastic and neoplastic stages represented in the PBECO:RI model showed similarity to corresponding early stages of the human disease. This genomic instability-based model will be used to study the mechanisms involved in the early stages of prostate carcinogenesis and to investigate the nature of subsequent events necessary for the progression to advanced disease.


Subject(s)
Disease Models, Animal , Prostatic Neoplasms/genetics , Animals , Biomarkers, Tumor/biosynthesis , Deoxyribonuclease EcoRI/biosynthesis , Deoxyribonuclease EcoRI/genetics , Gene Expression , Genes, fos , Humans , Ki-67 Antigen/biosynthesis , Male , Mice , Mice, Transgenic , Proliferating Cell Nuclear Antigen/biosynthesis , Prostatic Neoplasms/metabolism , Prostatic Neoplasms/pathology , Proto-Oncogene Proteins c-fos/biosynthesis , Transgenes
20.
Mol Cell Biol ; 20(16): 5986-97, 2000 Aug.
Article in English | MEDLINE | ID: mdl-10913181

ABSTRACT

Using an inducible transcription system which allows the regulated expression of C/EBP isoforms in tissue culture cells, we have found that the ectopic expression of C/EBPalpha, at a level comparable to that found in normal liver tissue, has a pronounced antimitogenic effect in mouse L cells and NIH 3T3 cells. The inhibition of cell division by C/EBPalpha in mouse cells cannot be reversed by simian virus 40 T antigen, by oncogenic ras, or by adenovirus E1a protein. When expressed in thymidine kinase-deficient L cells or 3T3 cells, C/EBPalpha is detected in a protein complex which binds to the E2F binding sites found in the promoters of the genes for E2F-1 and dihydrofolate reductase (DHFR). Bacterially expressed C/EBPalpha has no affinity for these E2F sites, but when recombinant C/EBPalpha is added to nuclear extracts from mouse fibroblasts, a new E2F binding activity appears, which contains the C/EBPalpha protein. Using an E2F-DP1-responsive promoter linked to a reporter gene, it can be shown that C/EBPalpha directly inhibits the induction of this promoter by E2F-DP1 in transient-transfection assays. Furthermore, C/EBPalpha can be shown to inhibit the S-phase induction of the E2F and DHFR promoters in permanent cell lines. These findings delineate a straightforward mechanism for C/EBPalpha-mediated cell growth arrest through repression of E2F-DP-mediated S-phase transcription.


Subject(s)
Carrier Proteins , Cell Cycle Proteins , DNA-Binding Proteins/genetics , Gene Expression Regulation , Nuclear Proteins/genetics , Transcription Factors/genetics , Transcription, Genetic , Animals , CCAAT-Enhancer-Binding Proteins , Cell Division/genetics , Cell Line , E2F Transcription Factors , E2F1 Transcription Factor , Mice , Protein Isoforms/genetics , Retinoblastoma-Binding Protein 1 , Transcription Factor DP1
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