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2.
BMC Med Inform Decis Mak ; 24(1): 145, 2024 May 29.
Article in English | MEDLINE | ID: mdl-38811961

ABSTRACT

BACKGROUND: Nasal polyps and inverted papillomas often look similar. Clinically, it is difficult to distinguish the masses by endoscopic examination. Therefore, in this study, we aimed to develop a deep learning algorithm for computer-aided diagnosis of nasal endoscopic images, which may provide a more accurate clinical diagnosis before pathologic confirmation of the nasal masses. METHODS: By performing deep learning of nasal endoscope images, we evaluated our computer-aided diagnosis system's assessment ability for nasal polyps and inverted papilloma and the feasibility of their clinical application. We used curriculum learning pre-trained with patches of nasal endoscopic images and full-sized images. The proposed model's performance for classifying nasal polyps, inverted papilloma, and normal tissue was analyzed using five-fold cross-validation. RESULTS: The normal scores for our best-performing network were 0.9520 for recall, 0.7900 for precision, 0.8648 for F1-score, 0.97 for the area under the curve, and 0.8273 for accuracy. For nasal polyps, the best performance was 0.8162, 0.8496, 0.8409, 0.89, and 0.8273, respectively, for recall, precision, F1-score, area under the curve, and accuracy. Finally, for inverted papilloma, the best performance was obtained for recall, precision, F1-score, area under the curve, and accuracy values of 0.5172, 0.8125, 0.6122, 0.83, and 0.8273, respectively. CONCLUSION: Although there were some misclassifications, the results of gradient-weighted class activation mapping were generally consistent with the areas under the curve determined by otolaryngologists. These results suggest that the convolutional neural network is highly reliable in resolving lesion locations in nasal endoscopic images.


Subject(s)
Deep Learning , Endoscopy , Nasal Cavity , Nasal Polyps , Humans , Nasal Cavity/diagnostic imaging , Nasal Cavity/pathology , Nasal Polyps/diagnostic imaging , Nose Neoplasms/diagnostic imaging , Nose Neoplasms/pathology , Papilloma, Inverted/diagnostic imaging , Papilloma, Inverted/pathology , Diagnosis, Computer-Assisted , Diagnosis, Differential , Male , Middle Aged , Adult
3.
Sci Rep ; 13(1): 17722, 2023 10 18.
Article in English | MEDLINE | ID: mdl-37853005

ABSTRACT

We aimed to evaluate the association between periodontitis in the upper jaw and chronic rhinosinusitis (CRS) using the nationwide Korean National Health and Nutrition Examination Survey (KNHANES) data. In this cross-sectional study, data of KNHANES participants enrolled between 2008 and 2012 were reviewed. Periodontitis of the upper teeth was diagnosed by dentists according to the community periodontal index with standardized methods. CRS was diagnosed by otorhinolaryngologists according to the European Position Paper on Rhinosinusitis and Nasal Polyps 2020 with nasal endoscopy findings. We also evaluated the association between periodontitis and CRS according to smoking and drinking status. Univariate and multivariate logistic regression analyses were performed. Overall, 28,761 participants were eligible for analysis, and 210 were diagnosed with CRS. Periodontitis was associated with CRS diagnosis (odds ratio [OR] = 1.391, 95% confidence interval [CI] = 1.013-1.912). Non-drinkers showed no significant association between periodontitis and CRS (OR = 1.142, 95% CI 0.746-1.749). However, among drinkers, periodontitis was significantly associated with CRS (OR = 1.733, 95% CI 1.091-2.753). The number of smokers with CRS was not statistically sufficient and a logistic regression model based on smoking status could not be generated. Individuals with periodontitis in the upper jaw may need to consult an otorhinolaryngologist for comorbid CRS especially according to drinking status.


Subject(s)
Periodontitis , Sinusitis , Humans , Nutrition Surveys , Cross-Sectional Studies , Periodontal Index , Periodontitis/complications , Periodontitis/epidemiology , Comorbidity , Sinusitis/complications , Sinusitis/epidemiology , Sinusitis/diagnosis , Chronic Disease
4.
Diabetol Metab Syndr ; 15(1): 29, 2023 Feb 23.
Article in English | MEDLINE | ID: mdl-36823659

ABSTRACT

PURPOSE: Although a recent meta-analysis demonstrated a positive association between serum γ-glutamyltransferase (GGT) and metabolic syndrome (MetS), sex differences in the relationship between GGT levels and MetS risk were not fully considered. We prospectively examined the relationship between serum GGT levels and incidence risk of MetS. METHODS: Data were collected from the Korean Genome and Epidemiology Study (KoGES) enrolled in 2001-2002. Among 10,030 total participants, 5960 adults (3130 men and 2830 women) aged 40-69 without MetS were included and divided according to sex-specific quartiles of baseline serum GGT levels and followed up biennially until 2014. The hazard ratios (HRs) with 95% confidence intervals (CIs) for incident MetS were prospectively analyzed using multiple Cox proportional hazards regression analysis models. RESULTS: Among 5960 participants, 1215 males (38.8%) and 1263 females (44.6%) developed MetS during 12-year follow up. Higher quartiles of GGT showed significantly higher cumulative incidence of MetS in both sexes (log-rank test P < 0.001). The HRs (95% CIs) for incident type 2 diabetes for the highest quartile versus referent lowest quartile for serum GGT levels were 3.01 (2.35-3.76) for men and 1.83 (1.30-2.57) for women after adjusting for age, smoking status, daily alcohol intake (g/day), regular exercise, family history of diabetes, and log-transformed LDL-cholesterol, creatinine, and aminotransferase levels. CONCLUSION: In conclusion, high levels of GGT were found to be associated with increased risk of Mets in both men and women and the positive associations were stronger in men than in women.

5.
Int J Mol Sci ; 23(14)2022 Jul 21.
Article in English | MEDLINE | ID: mdl-35887379

ABSTRACT

Dendritic cells (DCs) are antigen-presenting cells derived from the bone marrow that play an important role in the association between the innate and adaptive immune responses. The onset and development of chronic rhinosinusitis (CRS) involve a serious imbalance in immune regulation and mechanical dysfunction caused by an abnormal remodeling process. Recent studies have shown that an increase in DCs in CRS and their function of shaping the nasal mucosal immune response may play an important role in the pathogenesis of CRS. In this review, we discuss DC subsets in mice and humans, as well as the function of DCs in the nasal sinus mucosa. In addition, the mechanism by which DCs can be used as targets for therapeutic intervention for CRS and potential future research directions are also discussed.


Subject(s)
Rhinitis , Sinusitis , Animals , Chronic Disease , Dendritic Cells , Humans , Mice , Phenotype , Rhinitis/genetics , Sinusitis/genetics
6.
Oral Dis ; 28(8): 2277-2284, 2022 Nov.
Article in English | MEDLINE | ID: mdl-33930233

ABSTRACT

OBJECTIVES: In this study, we aimed to determine the relationship between oral health status and thyroid dysfunction. METHODS: A population-based cross-sectional analysis using data from the Korean National Health and Nutrition Examination Survey (KNHNES) was performed. We investigated the association between oral health-related parameters and the prevalence of thyroid diseases. In addition, the relationship between oral health status and thyroid function test (TFT) results was analyzed. One-way analysis of variances or chi-square test was used for comparisons between oral health-related parameters and presence of thyroid diseases. Univariable and multivariable logistic regression analyses were conducted to evaluate the associations between participants' characteristics including oral health-related parameters and the abnormal results of TFTs. RESULTS: A total of 18,034 adults were surveyed. Histories of thyroid diseases were found to be more common in people who brushed their teeth frequently or used oral hygiene products. However, histories of periodontitis and community periodontal index (CPI) did not show significant associations with histories of thyroid diseases. Among 14,860 participants without history of thyroid disorders, people having higher CPI values demonstrated higher probabilities of abnormal TFTs (OR 1.381, 95% CI 1.241-1.537, p < .0001); however, statistical significance was not found after adjusting for the other variables. CONCLUSIONS: Our study demonstrated that good oral health-related behavior was associated with more frequent thyroid disease history. High CPI showed a significant association with TFT abnormalities; however, the significance of this association became lower when other variables such as age and sex were adjusted. Further studies will be needed to determine how the control of oral health-related conditions actually has a causal relationship with thyroid disease/dysfunction through prospective cohort studies.


Subject(s)
Periodontal Diseases , Thyroid Diseases , Adult , Humans , Cross-Sectional Studies , Nutrition Surveys , Oral Health , Periodontal Diseases/complications , Periodontal Diseases/epidemiology , Prospective Studies , Thyroid Diseases/complications , Thyroid Diseases/epidemiology
7.
Int J Mol Sci ; 22(9)2021 Apr 29.
Article in English | MEDLINE | ID: mdl-33947066

ABSTRACT

The pathogenesis of nasal inflammatory diseases is related to various factors such as anatomical structure, heredity, and environment. The nasal microbiota play a key role in coordinating immune system functions. Dysfunction of the microbiota has a significant impact on the occurrence and development of nasal inflammation. This review will introduce the positive and negative roles of microbiota involved in immunity surrounding nasal mucosal diseases such as chronic sinusitis and allergic rhinitis. In addition, we will also introduce recent developments in DNA sequencing, metabolomics, and proteomics combined with computation-based bioinformatics.


Subject(s)
Microbiota , Nasal Cavity/microbiology , Nasal Mucosa/microbiology , Rhinitis/microbiology , Sinusitis/microbiology , Adult , Antigens, Bacterial/immunology , Child , Chronic Disease , Dysbiosis/immunology , Dysbiosis/microbiology , Humans , Metabolomics/methods , Nasal Cavity/immunology , Nasal Mucosa/immunology , Proteomics/methods , Rhinitis/immunology , Rhinitis, Allergic/immunology , Rhinitis, Allergic/microbiology , Sequence Analysis, DNA/methods , Sinusitis/immunology
8.
Anal Biochem ; 585: 113410, 2019 11 15.
Article in English | MEDLINE | ID: mdl-31473245

ABSTRACT

Interferences in human plasma immunoassay are severe challenge that affects the sensitivity and reproducibility of the assay. The clotting factor fibrinogen is a negatively charged protein and is one of the most common sources of interference in immunoassays, and its removal increases the sensitivity and reproducibility. Here, we present a highly sensitive and reproducible method for the detection of prostate specific antigen (PSA) in human plasma immunoassays. Protamine sulfate, a highly positively charged protein, was used to precipitate fibrinogen via ionic interaction to improve the sensitivity and reproducibility of human plasma immunoassay. In a sandwich ELISA for PSA using plasma and protamine-treated plasma samples, the limit of detection was improved from 413 pg/mL in plasma to 235 pg/mL in protamine-treated plasma samples, and the coefficient of variation known as a measure of reproducibility was significantly lowered by protamine treatment. The use of protamine sulfate in human plasma immunoassays for detection of PSA using quartz crystal microbalance (QCM) biosensors resulted in increased sensitivity and reproducibility by about 2-fold and 3-fold, respectively, relative to when not using protamine sulfate. Based on these results, protamine sulfate was the best choice to increase the sensitivity and reproducibility in immunoassays using plasma samples.


Subject(s)
Blood Coagulation Factors/chemistry , Fibrinogen/chemistry , Immunoassay/methods , Prostate-Specific Antigen/blood , Prostate-Specific Antigen/chemistry , Biosensing Techniques , Enzyme-Linked Immunosorbent Assay , Humans , Limit of Detection , Protamines/chemistry , Quartz Crystal Microbalance Techniques , Reproducibility of Results , Sensitivity and Specificity , Silicon Dioxide/chemistry , Surface Properties
9.
Nanotechnology ; 30(44): 445502, 2019 11 01.
Article in English | MEDLINE | ID: mdl-31362281

ABSTRACT

We present a quartz crystal microbalance (QCM) immunosensor for highly sensitive detection of prostate-specific antigen (PSA) in a human serum immunoassay. In particular, in this study, we employed signal amplification using and enlarging gold nanoparticles. Because QCM measures the change of resonance frequency according to the mass change occurring on the sensor surface, we could quantitatively analyze PSA based on a tremendous increase in mass by sandwich immunoassay using AuNP-conjugated anti-PSA-detecting antibody enhanced with subsequent gold staining. The limit of detection of the PSA immunoassay in human serum without gold staining enhancement was 687 pg ml-1 but was 48 pg ml-1 with the gold staining-mediated signal amplification. That is, amplifying the signal resulted in increased sensitivity and reproducibility of immunoassay in a human serum.


Subject(s)
Biosensing Techniques/methods , Gold/chemistry , Immunoassay/methods , Metal Nanoparticles , Antibodies, Immobilized/chemistry , Antibodies, Immobilized/immunology , Humans , Kallikreins/blood , Kallikreins/immunology , Limit of Detection , Male , Metal Nanoparticles/chemistry , Prostate-Specific Antigen/blood , Prostate-Specific Antigen/immunology , Quartz Crystal Microbalance Techniques , Reproducibility of Results , Surface Properties
10.
Mol Biol Rep ; 45(4): 611-619, 2018 Aug.
Article in English | MEDLINE | ID: mdl-29846878

ABSTRACT

We present here on an innovative assay for detecting miRNAs using a uniquely designed specific extension sequence that provides high efficiency and accuracy. This assay consists of poly(A) tailing and reverse transcription followed by real-time PCR. In the first step of this reaction, target miRNAs are poly(A) tailed by poly(A) polymerase followed by cDNA synthesis using poly(T) adaptors. In the second step, cDNA is hybridized to the 3'-end of a specific extension sequence that contains part of a miRNA sequence; this cDNA-specific extension sequence hybrid forms the novel PCR template. The PCR template is amplified in a SYBR Green-based quantitative real-time PCR with universal forward and reverse primers. The miR-106b in human brain total RNA could be detected quantitatively in the range of seven orders of magnitude with high linearity and reproducibility. This innovative extension-based assay has several performance advantages over the poly(A) tailing method that include lower CT values, clear gel electrophoresis images, and distinct nucleotide peaks in sequencing chromatograms.


Subject(s)
MicroRNAs/analysis , MicroRNAs/genetics , Sequence Analysis, RNA/methods , DNA Primers/genetics , Humans , Poly A , Real-Time Polymerase Chain Reaction/methods , Reproducibility of Results , Reverse Transcription
11.
Anal Biochem ; 536: 32-35, 2017 11 01.
Article in English | MEDLINE | ID: mdl-28811087

ABSTRACT

Highly specific detection of miRNAs was performed using a novel bi-directional extension (BDE) assay. After reverse transcription, the cDNA was hybridized to a uniquely designed specific BDE sequence; this cDNA-BDE hybrid forms the PCR template. The PCR template was amplified in a SYBR Green-based quantitative real-time PCR. The miR-145 in human brain total RNA could be detected quantitatively in the range of seven orders of magnitude with high linearity and reproducibility. This innovative BDE assay has several performance advantages over the poly(A) tailing method that include lower CT values, clear gel electrophoresis images, and distinct nucleotide peaks in sequencing chromatograms.


Subject(s)
MicroRNAs/genetics , Real-Time Polymerase Chain Reaction , DNA, Complementary/genetics , Humans , Sensitivity and Specificity
12.
Chem Commun (Camb) ; 48(93): 11431-3, 2012 Dec 04.
Article in English | MEDLINE | ID: mdl-23086600

ABSTRACT

New phenothiazine-based organic dyes with two anchoring groups at 3,7 positions and systematic alkyl chains on nitrogen were prepared. Their TiO(2)-Pt composites showed excellent photo-catalytic activities in visible light-induced water splitting. Interestingly, phenothiazine dyes with longer alkyl chains showed better stability in catalytic systems.

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