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1.
Biol Neonate ; 81(4): 266-78, 2002.
Article in English | MEDLINE | ID: mdl-12011571

ABSTRACT

No information is available on transcription factors (TF), the main regulators of gene expression, in perinatal asphyxia (PA), and as pathomechanisms in PA are different, data on TFs from ischemia or hypoxia cannot be simply extrapolated to PA, and no studies have been reported to show an expressional pattern or the concerted action of TFs. We, therefore, used a gene-hunting technique, subtractive hybridization, to show sequences different in brains of normoxic and perinatally asphyxiated (10 and 20 min of asphyxia) rats. These subtracted sequences were identified by gene bank and assigned to individual genes. At 10 min of PA the TFs NFI/CAAT-binding protein, NF-kappa-B p65, N-myc, basic helix loop helix protein D82868, and c-myc intron binding protein were upregulated. At 20 min of PA the TFs SOX4 and neuronal death factor were upregulated, whereas the TFs c-maf, PEBP major transcription factor, brn-2, homeodomain protein Af004431, and zinc finger transcriptional factor M65008 were downregulated. The biological meaning of our findings is the demonstration of a pathophysiological pattern of TFs including POU, zinc finger, homeodomain, and basic helix-loop helix motifs in PA, proposing pathomechanisms for brain damage from PA, explaining transcriptional changes in general (as, e.g., NF-kappa-B p65, etc.) or in specific terms (as, e.g., neuronal death factor).


Subject(s)
Asphyxia Neonatorum/metabolism , Brain/metabolism , Transcription Factors/genetics , Animals , Animals, Newborn , Base Sequence , Disease Models, Animal , Helix-Loop-Helix Motifs , Humans , Infant, Newborn , Molecular Sequence Data , NF-kappa B/genetics , RNA, Messenger/genetics , Rats , Reference Values , Sequence Alignment , Sequence Homology, Nucleic Acid , Transcription, Genetic
2.
Electrophoresis ; 22(1): 43-8, 2001 Jan.
Article in English | MEDLINE | ID: mdl-11197177

ABSTRACT

The small nuclear ribonucleoprotein 70K (snRNP 70K; U1-70 kDa) is an integral part of the spliceosome, a large RNA-protein complex catalyzing the removal of introns from nuclear pre-mRNA. snRNP is one of the best-studied essential subunits of snRNPs, is highly conserved and its inactivation was shown to result in complete inhibition of splicing. Applying subtractive hybridization, we found a sequence with 100% identity to snRNP absent in fetal Down syndrome (DS) brain. This observation made us determine snRNP-mRNA steady-state levels and protein levels in brains of adult patients with DS. snRNP-mRNA and protein levels of five individual brain regions of DS and controls each, were determined by blotting techniques. snRNP-mRNA steady state levels were significantly decreased in DS brain. Performing Western blots with monoclonal and human antibodies, snRNP protein levels were decreased in several regions of DS brain, although one monoclonal antibody did not reveal different snRNP-immunoreactivity. Although decreased snRNP-protein could be explained by decreased mRNA-steady state levels, another underlying mechanism might be suggested: snRNP is one of the death substrates rapidly cleaved during apoptosis by interleukin-1-beta-converting enzyme-like (ICE) proteases, which was well-documented by several groups. As apoptosis is unrequivocally taking place in DS brain leading to permanent cell loses, decreased snRNP-protein levels may therefore reflect decreased synthesis and increased apoptosis-related proteolytic cleavage.


Subject(s)
Brain/metabolism , Down Syndrome/metabolism , Ribonucleoprotein, U1 Small Nuclear/deficiency , Adult , Brain/pathology , Down Syndrome/pathology , Humans , Nucleic Acid Hybridization/methods , RNA, Messenger , Ribonucleoprotein, U1 Small Nuclear/genetics , Ribonucleoprotein, U1 Small Nuclear/metabolism
3.
Exp Neurol ; 161(1): 174-82, 2000 Jan.
Article in English | MEDLINE | ID: mdl-10683283

ABSTRACT

Ribosomes are integral constitutens of the protein synthesis machinery. Polymerase I (POL I) is located in the nucleolus and transcribes the large ribosomal genes. POL I activity is decreased in ischemia but nothing is known so far on POL I in perinatal asphyxia. We investigated the involvement of POL I in a well-documented model of graded systemic asphyxia at the level of activity, mRNA, protein, and morphology. Caeserean section was performed at the 21st day of gestation. Rat pups still in the uterus horns were immerged in a water bath for asphyctic periods from 5-20 min. Brain was taken for measurement of pH, nuclear POL I activity, and mRNA steady state, and protein levels of RPA40, an essential subunit of POL I and III. Silver staining and transmission electron microscopy with morphometry when appropriate were used to examine the nucleolus. Brain pH and nuclear POL I activity decreased with the length of the asphyctic period while POL-I mRNA and protein levels were unchanged. Accompanying the decrease in brain pH we found significant changes of nucleolar structure in the course of perinatal asphyxia at the light and electron microscopic level. As early as ten min following the asphyctic insult, morphological disintegration of the nucleolus was observed. The changes became more dramatic with longer duration of perinatal asphyxia. We conclude that severe acidosis may be responsible for decreased POL activity and for disintegration of nucleoli in neurons. This condition may lower the ribosome content in neonatal neurons and impair protein synthesis.


Subject(s)
Asphyxia Neonatorum/metabolism , Cell Nucleolus/enzymology , Frontal Lobe/enzymology , RNA Polymerase I/metabolism , Animals , Animals, Newborn , Blotting, Northern , Cell Nucleolus/ultrastructure , Disease Models, Animal , Female , Gene Expression Regulation, Enzymologic , Humans , Hydrogen-Ion Concentration , Infant, Newborn , Microscopy, Electron , Pregnancy , RNA Polymerase I/analysis , RNA Polymerase I/genetics , RNA, Messenger/analysis , Rats , Rats, Sprague-Dawley , Silver Staining , Transcription, Genetic/physiology
4.
Curr Eye Res ; 21(5): 867-76, 2000 Nov.
Article in English | MEDLINE | ID: mdl-11262608

ABSTRACT

BACKGROUND: In glaucoma there is a loss of retinal ganglion cells. There is evidence that this loss can occur by apoptosis. The signal transduction leading to retinal ganglion cell apoptosis in glaucoma is not yet clear. The present study compares the gene expression in lymphocytes of normal tension glaucoma patients (NTG-patients) with the one of healthy controls. METHODS: Subtractive hybridization was used to compare mRNA in lymphocytes of six vasospastic NTG-patients with six age and sex matched healthy subjects. RESULTS: Genes coding for p53-protein, NTP (neural thread protein) and 20 S proteasome subunit XAPC7 were overexpressed, whereas those coding for XPGC (Xeroderma pigmentosum gene), the survivin protein as well as one type of ABC transport protein were underexpressed. CONCLUSION: In comparison to healthy controls, patients with vasospastic NTG seem to over- as well as under-express certain genes in their lymphocytes.


Subject(s)
Eye Proteins/genetics , Glaucoma, Open-Angle/metabolism , Lymphocytes/metabolism , Microtubule-Associated Proteins , RNA, Messenger/metabolism , ATP-Binding Cassette Transporters/genetics , Adult , Aged , Amino Acid Sequence , Base Sequence , Cysteine Endopeptidases/genetics , DNA-Binding Proteins/genetics , Endonucleases , Female , Gene Expression , Gene Expression Profiling , Humans , In Situ Hybridization , Inhibitor of Apoptosis Proteins , Male , Middle Aged , Molecular Sequence Data , Neoplasm Proteins , Nerve Tissue Proteins/genetics , Nuclear Proteins , Proteins/genetics , Survivin , Transcription Factors , Tumor Suppressor Protein p53/genetics , Up-Regulation
5.
Amino Acids ; 17(3): 301-13, 1999.
Article in English | MEDLINE | ID: mdl-10582129

ABSTRACT

In pro- and eucaryotic life, cellular and subcellular compartments are separated by membranes and the regulated and selective passage of specific molecules across these membranes is a basic and highly conserved principle. We were interested whether taurine, a naturally occurring amino acid, would be able to induce or suppress expression of transporters with the Rationale that taurine was shown to detoxify a series of endogenous toxins and xenobiotics of various chemically non-related structures. For this purpose we used a gene hunting technique, subtractive hybridization, subtracting mRNAs of taurine-treated rat brain and heart from untreated controls. Subtracted mRNAs were then converted to cDNAs, amplified, sequenced and identified by gene bank data. We found five transporter transcripts, the phosphonate transport ATPase PHNC, multidrug transporter homolog MTH104, protein-export-membrane protein SECD, oligopeptide transporters oppA and oppD, in the brain and two: ABC-transporter BRAF-2 and cation-transport ATPase PACS, in the heart. Homologies of the sequences found were in any case > 50% thus permitting the identification of transporters with high probability. The biological meaning could be that a naturally occurring amino acid, taurine, modulates complex transport systems. The most prominent finding is the upregulation of a multidrug transporter transcript, explaining a mechanism for the nonselective detoxifying action of taurine.


Subject(s)
Brain/metabolism , Carrier Proteins/genetics , Gene Expression Regulation/physiology , Myocardium/metabolism , Taurine/physiology , Amino Acid Sequence , Animals , Base Sequence , DNA , Female , Molecular Sequence Data , Nucleic Acid Hybridization , RNA, Messenger/genetics , Rats , Rats, Sprague-Dawley , Sequence Homology, Nucleic Acid , Subtraction Technique
6.
Life Sci ; 64(20): 1831-8, 1999.
Article in English | MEDLINE | ID: mdl-10350357

ABSTRACT

Mechanisms in the pathogenesis of perinatal asphyxia (PA) at the gene level are only beginning to be elucidated, although gene hunting using differential display has revealed differences in gene expression between hypoxic and normoxic cells in vitro. As no information on gene expression was available from in vivo studies, we decided to use a non-invasive and clinically relevant animal model of PA for mRNA hunting applying the subtractive hybridization method. mRNAs from normoxic rat brain and brain of rat pups with 20 min of asphyxia were isolated and compared by this technique. The resulting subtracted mRNAs were converted to cDNA, sequenced and identified by gene bank data. A series of transcripts representing transcription factors, transporters, metabolic factors, were found to be up- or downregulated providing insight into mechanisms of PA, and on the other hand, genes with unknown functions could be given a preliminary role i.e. in PA. Results obtained with this powerful tool are now challenging quantitative determination of these genes and gene products at the protein and activity level to confirm their role in PA.


Subject(s)
Asphyxia Neonatorum/physiopathology , Brain/metabolism , Nerve Tissue Proteins/genetics , RNA, Messenger/analysis , Transcription Factors/genetics , Animals , Animals, Newborn , Asphyxia Neonatorum/etiology , Asphyxia Neonatorum/metabolism , DNA Primers/chemistry , Female , Gene Expression , Gene Library , Humans , Hypoxia/complications , Infant, Newborn , Nerve Tissue Proteins/metabolism , Nucleic Acid Hybridization , Pregnancy , Rats , Rats, Sprague-Dawley , Transcription Factors/metabolism
7.
J Basic Microbiol ; 39(2): 137-40, 1999.
Article in English | MEDLINE | ID: mdl-10335606

ABSTRACT

The ability of thioredoxin (Trx) to protect cells from chemical damage was determined by comparing the growth of a control strain of Escherichia coli JM101 and isogenic strain transformed with the plasmid pKKTS1 containing the Streptomyces aureofaciens thioredoxin gene, in the presence of the nucleoside analogs arabinosylcytosine, 5-fluorouridine, ftorafur and carcinogen beta-naftylamine. Arabinosylcytosine showed no effect on the growth of either of the two strains. 5-fluorouridine, ftorafur [1-((R,S)-tetrahydrofuran-2-yl)-5-fluorouracil] and beta-naftylamine demonstrated lower inhibitory effects on the growth of the thioredoxin overproducing strain than on the growth of the control strain. These results suggested that Trx could protect the cells from chemical damage under certain metabolic conditions.


Subject(s)
Bacteria/drug effects , Thioredoxins/pharmacology , Bacteria/growth & development
8.
Life Sci ; 64(18): 1689-99, 1999.
Article in English | MEDLINE | ID: mdl-10328528

ABSTRACT

Although deficient DNA-repair was proposed for neurodegenerative disorders including Down Syndrome (DS), repair genes for nucleotide excision repair or X-ray repair have not been studied in brain yet. As one of the hypotheses for the pathogenesis of brain damage in DS is oxidative stress and cells of patients with DS are more susceptible to ionizing irradiation, we decided to study ERCC2, ERCC3 and XRCC1, representatives of repair genes known to be involved in the repair of oxidative DNA-damage. mRNA steady state levels of ERCC2, ERCC3, XRCC1, a transcription activator (TAF-DBP) and an elongation factor (EF1A) were determined and normalized versus the housekeeping gene beta-actin in five individual brain regions of nine controls and nine DS patients. Although different in the individual regions, DNA-repair genes were consistently higher in temporal, parietal and occipital lobes of patients with DS accompanied by comparable changes of TFA-DBP and EF1A. Our results are the first to describe DNA-repair gene patterns in human brain regions providing the basis for further studies in this area. We showed that DNA-repair genes ERCC2 and ERCC3 (excision-repair-cross-complementing-) for nucleotide excision repair and XRCC1 (X-ray-repair-cross-complementing-) for X-ray-repair, were increased at the transcriptional level with the possible biological meaning that this increase may be compatible with permanent (oxidative?) DNA damage.


Subject(s)
Brain/metabolism , DNA Helicases , DNA Repair/genetics , Down Syndrome/genetics , Drosophila Proteins , RNA, Messenger/analysis , Aged , DNA Damage , DNA-Binding Proteins/genetics , Female , Humans , Male , Middle Aged , Peptide Elongation Factor 1 , Peptide Elongation Factors/genetics , Proteins/genetics , Transcription Factors/genetics , X-ray Repair Cross Complementing Protein 1 , Xeroderma Pigmentosum Group D Protein
9.
Life Sci ; 64(12): 1037-44, 1999.
Article in English | MEDLINE | ID: mdl-10210286

ABSTRACT

Thyroid hormone abnormalities are strongly associated with Down Syndrome (DS) with elevated thyroid stimulating hormone (TSH) levels as the most consistent finding. Using subtractive hybridization for gene hunting we found significant overexpression of mRNA levels for the TSH-receptor (TSH-R) in brain of a fetus with DS. Based upon this observation we determined TSH-R protein levels in five brain regions of patients with DS (n=8), Alzheimer disease (AD, n=8) and controls (C, n=8). Western blots revealed significantly elevated immunoreactive TSH-R protein(s) 40 kD and 61 kD in temporal and frontal cortex of patients with DS and, unexpectedly, in AD. Levels for the 40 kD protein in temporal cortex were 1.00+/-0.036 (arbitrary units+/-SD) in C, 1.35+/-0.143 in DS, 1.52+/-0.128 in AD; in frontal cortex: 1.00+/-0.046 in C, 1.10+/-0.03 in DS, 1.10+/-0.038 in AD. Levels for the 61 kD protein in temporal cortex were 1.01+/-0.015 in C, 1.47+/-0.013 in DS, 1.623+/-0.026 in AD; in frontal cortex: 1.02+/-0.020 in C, 1.18 +/-0.123 in DS, 1.48+/-0.020 in AD. These results show that elevated brain immunoreactive TSH-R is not specific for DS and maybe reflecting apoptosis, a hallmark of both neurodegenerative disorders, as it is well-documented that the thyroid hormone system is involved in the control of programmed cell death.


Subject(s)
Alzheimer Disease/metabolism , Brain/metabolism , Down Syndrome/metabolism , Receptors, Thyrotropin/genetics , Amino Acid Sequence , Apoptosis , Base Sequence , Blotting, Western , Humans , Molecular Sequence Data , Molecular Weight , RNA, Messenger/analysis , Receptors, Thyrotropin/analysis , Receptors, Thyrotropin/immunology
10.
Neurosci Lett ; 260(2): 141-5, 1999 Jan 29.
Article in English | MEDLINE | ID: mdl-10025719

ABSTRACT

Impaired glucose metabolism in Down's syndrome (DS) has been well-documented in vivo, although information on the underlying biochemical defect is limited and no biochemical studies on glucose handling enzymes have been carried out in the brain. In a previous study, we found by gene hunting in DS brain an overexpressed sequence homologous to the glyceraldehyde 3-phosphate dehydrogenase (G3PD) gene. Here we studied G3PD activity and expression levels, using two-dimensional gel analysis, in five brain regions of patients with DS and Alzheimer's disease (AD). The protein expression levels in four brain areas were approximately 1.5-fold higher in patients with DS in comparison with the controls. G3PD activity was significantly elevated in the frontal, parietal, occipital and temporal lobe of DS as well, but not in the corresponding AD brain regions. We conclude that our biochemical findings complement previously published data of impaired brain glucose metabolism in DS evaluated by positron emission tomography in clinical studies.


Subject(s)
Brain/enzymology , Down Syndrome/enzymology , Glyceraldehyde-3-Phosphate Dehydrogenases/metabolism , Aged , Electrophoresis, Gel, Two-Dimensional/methods , Female , Humans , Male
11.
Clin Sci (Lond) ; 96(3): 279-85, 1999 Mar.
Article in English | MEDLINE | ID: mdl-10029564

ABSTRACT

Impaired glucose metabolism in Down's syndrome (DS) has been well-documented in vivo, although information on the underlying biochemical defect is limited and no biochemical studies on glucose handling enzymes have been carried out in the brain. Through gene hunting in fetal DS brain we found an overexpressed sequence homologous to the phosphoglycerate kinase (PGK) gene. This finding was studied further by investigating the activity levels of this key enzyme of carbohydrate metabolism in the brains of patients with DS. PGK activity was determined in five brain regions of nine patients with DS, nine patients with Alzheimer's disease and 14 controls. PGK activity was significantly elevated in the frontal, occipital and temporal lobe and in the cerebellum of patients with DS. PGK activity in corresponding brain regions of patients with Alzheimer's disease was comparable with controls. We conclude that our findings complement previously published data on impaired brain glucose metabolism in DS evaluated by positron emission tomography in clinical studies. Furthermore, we show that in DS, impaired glucose metabolism, represented by increased PGK activity, is a specific finding rather than a secondary phenomenon simply due to neurodegeneration or atrophy. These observations are also supported by data from subtractive hybridization, showing overexpressed PGK in DS brains at the transcriptional level early in life.


Subject(s)
Alzheimer Disease/enzymology , Brain/enzymology , Down Syndrome/enzymology , Fetal Diseases/enzymology , Phosphoglycerate Kinase/metabolism , Aged , Aged, 80 and over , Base Sequence , Brain/embryology , Female , Humans , Male , Middle Aged , Molecular Sequence Data , Phosphoglycerate Kinase/genetics , Up-Regulation
12.
J Neural Transm Suppl ; 57: 21-40, 1999.
Article in English | MEDLINE | ID: mdl-10666666

ABSTRACT

Aldehyde dehydrogenase (ALDH) is a key enzyme in fructose, acetaldehyde and oxalate metabolism and represents a major detoxification system for reactive carbonyls and aldehydes. In the brain, ALDH exerts a major function in the metabolism of biogenic aldehydes, norepinephrine, dopamine and diamines and gamma-aminobutyric acid. Subtractive hybridization studies in Down Syndrome (DS) fetal brain showed that mRNA for ALDH are downregulated. Here we studied the protein levels in the brain of adult patients. The proteins from five brain regions of 9 aged patients with DS and 9 controls were analyzed by two-dimensional (2-D) gel electrophoresis and identified by matrix-assisted laser desorption ionization mass spectrometry. ALDH levels were reduced in the brain regions of at least half of the patients with Down Syndrome, as compared to controls. The decreased ALDH levels in the DS brain may result in accumulation of aldehydes which can lead to the formation of plaques and tangles reflecting abnormally cross-linked, insoluble and modified proteins, found in aged DS brain. Furthermore, we constructed a 2-Dmap including approximately 120 identified human brain proteins.


Subject(s)
Aldehyde Dehydrogenase/genetics , Aldehyde Dehydrogenase/metabolism , Brain/enzymology , Down Syndrome/enzymology , Adult , Aged , Aldehyde Dehydrogenase/chemistry , Amino Acid Sequence , Base Sequence , Brain/growth & development , Down Syndrome/genetics , Fetus , Gene Library , Humans , Molecular Sequence Data , Open Reading Frames , Sequence Alignment , Sequence Homology, Amino Acid , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
13.
J Neural Transm Suppl ; 57: 99-124, 1999.
Article in English | MEDLINE | ID: mdl-10666671

ABSTRACT

Information on gene expression in brain of patients with Down Syndrome (DS, trisomy 21) is limited and molecular biological research is focussing on mapping and sequencing chromosome 21. The information on gene expression in DS available follows the current concept of a gene dosage effect due to a third copy of chromosome 21 claiming overexpression of genes encoded on this chromosome. Based upon the availability of fetal brain and recent technology of gene hunting, we decided to use subtractive hybridization to evaluate differences in gene expression between DS and control brains. Subtractive hybridization was applied on two fetal brains with DS and two age and sex matched controls, 23rd week of gestation, and mRNA steady state levels were evaluated generating a subtractive library. Subtracted sequences were identified by gene bank and assigned by alignments to individual genes. We found a series of up- and downregulated sequences consisting of chromosomal transcripts, enzymes of intermediary metabolism, hormones, transporters/channels and transcription factors (TFs). We show that trisomy 21 or aneuploidy leads to the deterioration of gene expression and the derangement of transcripts describes the impairment of transport, carriers, channels, signaling, known metabolic and hormone imbalances. The dys-coordinated expression of transcription factors including homeobox genes, POU-domain TFs, helix-loop-helix-motifs, LIM domain containing TFs, leucine zippers, forkhead genes, maybe of pathophysiological significance for abnormal brain development and wiring found in patients with DS. This is the first description of the concomitant expression of a large series of sequences indicating disruption of the concerted action of genes in this disorder.


Subject(s)
Brain/embryology , Chromosomes, Human, Pair 21 , Down Syndrome/embryology , Down Syndrome/genetics , Amino Acid Sequence , Animals , Base Sequence , Chromosome Mapping , Fetus , Gene Expression , Gestational Age , Humans , Mice , Molecular Sequence Data , Nucleic Acid Hybridization/methods , Proteins/chemistry , Proteins/genetics , Sequence Alignment , Sequence Homology, Amino Acid , Sequence Homology, Nucleic Acid , Transcription, Genetic
14.
J Neural Transm Suppl ; 57: 125-36, 1999.
Article in English | MEDLINE | ID: mdl-10666672

ABSTRACT

Information on gene expression in brain of patients with Down Syndrome (DS, trisomy 21) is limited and molecular biological research is focussing on mapping and sequencing chromosome 21. The information on gene expression in DS available follows the current concept of a gene dosage effect due to a third copy of chromosome 21 claiming overexpression of genes encoded on this chromosome. Based upon the availability of fetal brain and recent technology of gene hunting, we decided to use subtractive hybridization to evaluate differences in gene expression between DS and control brains. Subtractive hybridization was applied on two fetal brains with DS and two age and sex matched controls, 23rd week of gestation, and mRNA steady state levels were evaluated generating a subtractive library. Subtracted sequences were identified by gene bank and assigned by alignments to individual genes. We found a series of up- and downregulated sequences consisting of chromosomal transcripts, enzymes of intermediary metabolism, hormones, transporters/channels and transcription factors (TFs). We show that trisomy 21 or aneuploidy leads to the deterioration of gene expression and the derangement of transcripts described describes the involvement of chromosomes other than chromosome 21, explains impairment of transport, carriers, channels, signaling, known metabolic and hormones imbalances. The dys-coordinated expression of transcription factors including homeobox genes, POU-domain TFs, helix-loop-helix-motifs, LIM domain containing TFs, leucine zippers, forkhead genes, maybe of pathophysiological significance for abnormal brain development and wiring found in patients with DS. This is the first description of the concomitant expression of a large series of sequences indicating disruption of the concerted action of genes in that disorder.


Subject(s)
Brain/embryology , Chromosome Mapping , Down Syndrome/genetics , Animals , Brain/metabolism , Chromosomes, Human, Pair 21 , Down Syndrome/embryology , Fetus , Gene Expression , Gestational Age , Humans , Nucleic Acid Hybridization/methods , Proteins/genetics
15.
J Neural Transm Suppl ; 57: 247-56, 1999.
Article in English | MEDLINE | ID: mdl-10666680

ABSTRACT

A series of impaired metabolic functions in Down Syndrome (DS) including glucose handling has been described. Recent information from positron emission tomography studies in DS patients and our finding of downregulated phosphoglucose isomerase (PGI) in fetal brain with DS by gene hunting using subtractive hybridization, made us investigate PGI, a key enzyme of glucose metabolism, in brain of patients with DS, Alzheimer's disease (AD) and controls. PGI and phosphofructokinase (PFK) activities were determined in frontal, parietal, temporal, occipital lobe and cerebellum of 9 controls, 9 patients with DS and 9 patients with AD. PGI activity in DS brain was significantly decreased in frontal, temporal lobe and cerebellum, comparable to controls in parietal lobe and elevated in occipital lobe. Brain PGI activity of patients with AD was comparable to controls in all regions tested, PFK, a rate limiting enzyme of glucose metabolism, was comparable between all brain regions of all three groups. Data of this study confirm impaired glucose metabolism in DS proposed in literature and found by positron emission tomography (PET) studies. We show that changes in glucose handling in patients with AD as evaluated by PET studies are not supported by our data, although not contradictory, as determinants other than glucose metabolizing enzymes as e.g. vascular factors and glucose transport may account for these findings. Changes of downregulated PGI found by subtractive hybridization at the transcriptional level in fetal DS brain along with our findings in DS brain regions suggest a strong specific link between glucose metabolism and DS rather than AD.


Subject(s)
Alzheimer Disease/metabolism , Brain/metabolism , Down Syndrome/genetics , Down Syndrome/metabolism , Aged , Amino Acid Sequence , Base Sequence , Brain/embryology , Down Syndrome/embryology , Female , Fetus , Glucose-6-Phosphate Isomerase/genetics , Glucose-6-Phosphate Isomerase/metabolism , Hippocampus/embryology , Hippocampus/metabolism , Humans , Male , Middle Aged , Molecular Sequence Data , Phosphofructokinase-1/metabolism , RNA, Messenger/genetics , Sequence Alignment , Sequence Homology, Nucleic Acid
16.
J Neural Transm Suppl ; 57: 305-14, 1999.
Article in English | MEDLINE | ID: mdl-10666685

ABSTRACT

Performing gene hunting in fetal Down Syndrome (DS) brain, we found a downregulated sequence with 100% homology to the basic-helix-loop-helix transcription factor (TF) scleraxis (Scl). It was the aim of the study to evaluate Scl-mRNA steady state levels in adult DS brain with Alzheimer's disease (AD) neuropathological changes, brain of patients with AD, and controls in order to find out whether Scl-downregulation is linked to DS per se or simply to neurodegeneration, common to both disorders. Determination of Scl-mRNA steady state levels was carried out by a blotting method in frontal, parietal, temporal, occipital lobe and cerebellum. We found significantly decreased Scl-transcripts in brain of DS and AD, both, when normalized versus the house-keeping gene beta actin or total RNA. We demonstrate the significant decrease of Scl-mRNA steady state levels in the pathogenesis of DS and AD suggesting a tentative role for this transcription factor in the development of the neurodegenerative processes known to occur in both disorders. More specifically, the biological meaning of the downregulation of Scl may be the involvement in the pathogenesis of impaired neuronal plasticity and wiring observed in DS and AD, phenomena regulated by the concerted action of the many transcription factors expressed in human brain.


Subject(s)
Down Syndrome/genetics , Gene Expression Regulation , Transcription Factors/genetics , Adult , Alzheimer Disease/genetics , Alzheimer Disease/pathology , Amino Acid Sequence , Base Sequence , Basic Helix-Loop-Helix Transcription Factors , Cloning, Molecular , Down Syndrome/embryology , Down Syndrome/pathology , Fetus , Gestational Age , Helix-Loop-Helix Motifs , Humans , Molecular Sequence Data , Nerve Degeneration , RNA, Messenger/genetics , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Reference Values , Sequence Alignment , Sequence Homology, Nucleic Acid , Transcription Factors/chemistry , Transcription, Genetic
17.
J Neural Transm Suppl ; 57: 353-62, 1999.
Article in English | MEDLINE | ID: mdl-10666689

ABSTRACT

Human DNAse I (EC 3.1.21.1) is an enzyme most probably involved in apoptotic processes. Splicing of the DNAse I primary transcript in normal and apoptotic cells into up to 20 splicing forms and the recent description of a different family of caspase-activated DNAses, hampered studies on the role of DNAse I in apoptosis research. Performing gene hunting in fetal brain of patients with DS we found a sequence with 100% homology to DNAse I and this formed the Rationale for studies in adult DS brain. It was therefore the aim of the study to evaluate DNAse I-mRNA steady state levels in DS brain using adult brain without brain pathologies and Alzheimer's Disease (AD) brain as control, in order to rule out that DNAse I--overexpression may not be specific for DS but rather reflecting apoptosis per se, a hallmark of both disorders. Determination of DNAse I-mRNA steady state levels was carried out by a blotting method in frontal, parietal, temporal occipital lobe and cerebellum. We found significantly increased DNAse I transcripts in brain of DS and AD both, when normalized versus the house-keeping gene beta actin or total RNA. We demonstrate the significant increase of DNAse I--transcript in the pathogenesis of DS and AD suggesting a role for this enzyme in the apoptotic process known to occur in both disorders. We are now going to carry out protein and enzyme activity levels in our laboratory to confirm our findings at the transcriptional level.


Subject(s)
Brain/enzymology , Deoxyribonuclease I/genetics , Down Syndrome/enzymology , Down Syndrome/genetics , Adult , Amino Acid Sequence , Base Sequence , Brain/embryology , Cloning, Molecular , Conserved Sequence , Down Syndrome/embryology , Fetus , Humans , Molecular Sequence Data , Nucleic Acid Hybridization/methods , RNA, Messenger/genetics , Recombinant Proteins/metabolism , Sequence Alignment , Sequence Homology, Nucleic Acid , Transcription, Genetic
18.
Amino Acids ; 17(4): 347-55, 1999.
Article in English | MEDLINE | ID: mdl-10707764

ABSTRACT

Although the involvement of taurine in osmoregulation is well-documented and widely accepted, no detailed mechanism for this function has been reported so far. We used subtractive hybridization to study mRNA steady state levels of genes up- or downregulated by taurine. Rats were fed taurine 100 mg/kg body weight per day for a period of three days and hearts (total ventricular tissue) of experimental animals and controls were pooled and used for mRNA extraction. mRNAs from two groups were used for subtractive hybridization. Clones of the subtractive library were sequenced and the obtained sequences were identified by gen bank assignment. Two clones were found to contain sequences which could be assigned to the osmolarity sensor protein envZ, showing homologies of 61 and 65%. EnvZ is an inner membrane protein in bacteria, important for osmosensing and required for porine gene regulation. It undergoes autophosphorylation and subsequently phosphorylates OmpR, which in turn binds to the porine (outer membrane protein) promoters to regulate the expression of OmpF and OmpC, major outer membrane porines. This is the first report of an osmosensing mechanism in the mammalian system, which was described in bacteria only. Furthermore, we are assigning a tentative role for taurine in the osmoregulatory process by modifying the expression of the osmoregulatory sensor protein ENVZ.


Subject(s)
Bacterial Outer Membrane Proteins/genetics , Escherichia coli Proteins , Multienzyme Complexes , Osmosis/physiology , Taurine/physiology , Amino Acid Sequence , Animals , Base Sequence , DNA, Complementary , Female , Molecular Sequence Data , RNA, Messenger/genetics , Rats , Rats, Sprague-Dawley , Sequence Homology, Amino Acid , Sequence Homology, Nucleic Acid , Subtraction Technique
19.
Life Sci ; 63(13): 1157-67, 1998.
Article in English | MEDLINE | ID: mdl-9763211

ABSTRACT

Hypoxia inducible factor 1 (HIF-1) is a transcription factor which is expressed, when mammalian cells are subjected to hypoxia, activating the transcription of genes encoding proteins thought important for maintaining oxygen hemostasis. The aim of the study was to evaluate HIF-1 mRNA levels in a non-invasive model of perinatal asphyxia (PA). Brain was taken for studies on HIF-1 alpha and beta 10 min following the asphyctic period. To rule out influences by the redox status we also determined antioxidant enzyme mRNA levels for superoxide dismutase, catalase, glutathion peroxidase and performed electron spin resonance studies. To study the link to protein phosphorylation as previously proposed, we evaluated mRNA levels for protein kinase C. As DNA breaks were reported to occur in PA, we determined mRNA levels of two genes representing DNA nucleotide excision repair, ERCC2 and ERCC3, and a DNA repair gene involved in the repair of oxidation mediated DNA damage, XRCC1. mRNAs for HIF-1 were not detectable following 5-20 minutes of asphyxia. The antioxidant enzymes did not show any changes during the asphyctic periods either and electron spin resonance failed to detect the presence of the hydroxyl radical. PKC significantly decreased with the length of the asphyctic period. ERCC2 and XRCC1 mRNAs were inducible during the acute phase of asphyxia indicating early repair phenomena. HIF-1 may not be relevant for periods of PA up to 20 minutes, the maximal survival time in our model. Neonatal factors may be responsible for that phenomenon although we cannot rule out that HIF-1 changes may occur at the protein level.


Subject(s)
Asphyxia/metabolism , DNA Helicases , DNA Repair/genetics , DNA-Binding Proteins/biosynthesis , Drosophila Proteins , Nuclear Proteins/biosynthesis , RNA, Messenger/metabolism , Transcription Factors , Animals , Animals, Newborn , Brain/metabolism , Catalase/genetics , DNA-Binding Proteins/genetics , Electron Spin Resonance Spectroscopy , Female , Glutathione Peroxidase/genetics , Hydrogen-Ion Concentration , Hydroxyl Radical/metabolism , Hypoxia-Inducible Factor 1 , Hypoxia-Inducible Factor 1, alpha Subunit , Pregnancy , Proteins/genetics , Rats , Rats, Sprague-Dawley , Superoxide Dismutase/genetics , X-ray Repair Cross Complementing Protein 1 , Xeroderma Pigmentosum Group D Protein
20.
Brain Res ; 806(1): 55-9, 1998 Sep 21.
Article in English | MEDLINE | ID: mdl-9739107

ABSTRACT

Performing gene hunting in Down Syndrome fetal brain we detected an overexpressed sequence highly homologous to the human vasopressin gene. As this neuropeptide may be involved in the pathogenetic mechanism and, moreover, was described to play a role in memory and learning, we decided to study the brain gene product level in Down Syndrome (DS), controls and patients with Alzheimer's disease (AD). Subtractive hybridization was used to study the differential expression between steady state mRNA levels in fetal brain of DS and controls at the 23rd week of gestation. A radioimmunological method was used to determine vasopressin (AVP) in five brain regions of each 9 aged DS brains, 9 brains with AD and 9 control individuals, obtained from brain bank. An overexpressed nucleic acid sequence with 91% homology to the vasopressin gene was detected in both fetal brains with DS. AVP levels in controls were of the order cerebellum>occipital>frontal>parietal>temporal lobe and were significantly higher in temporal lobe and lower in cerebellum of patients with DS. AVP levels in brain of AD patients were also significantly increased in temporal lobe but were not reduced in cerebellum. The biological meaning of increased AVP remain unclear but may be linked to the neurodegenerative processes, proposed to be similar in both disorders. Data from gene hunting in fetal DS brain along with our data on aged DS and AD patients suggest the early involvement of AVP in the pathomechanism accompanying cholinergic, monoaminergic and neuropeptidergic deficits described in DS and AD.


Subject(s)
Alzheimer Disease/metabolism , Arginine Vasopressin/metabolism , Brain/metabolism , Down Syndrome/metabolism , Aged , Amino Acid Sequence , Arginine Vasopressin/genetics , Base Sequence , Female , Fetus/metabolism , Humans , Male , Molecular Sequence Data , Nucleic Acid Hybridization/methods , Tissue Distribution
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