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1.
Int J Hyperthermia ; 37(1): 506-516, 2020.
Article in English | MEDLINE | ID: mdl-32423261

ABSTRACT

Introduction: The Cumulative Equivalent Minute at 43 °C (CEM43) thermal dose model has been empirically derived more than 30 years ago and still serves as a benchmark for hyperthermia protocols despite the advent of regulatory network models. However, CEM43 suffers from several limitations regarding its inability to predict the effect of complex time varying profiles (thermotolerance, step-down heating), to predict synergistic effects with drug treatments or to explain the specificity of a cell line in thermal resistance.Objective: Define a new generic predictive tool for thermal injury based on regulatory network models. Identify the biological parameters that account for the thermal resistance.Materials: Comparative study of cell survival upon hyperthermia collected from literature (17 sets in 11 publications that cover 14 different cell lines from 8 different tissues).Results: A dynamical model describes accurately cell survival according to the amplitude and duration of exposure but also molecular chaperone expression level. In the case of square shape hyperthermia, approximated analytical expression of the cell survival is derived from the dynamical model and compared to CEM43 description. The molecular chaperone expression level defines the thermal resistance of a given cell line and can be estimated from a single experimental result through an easy-to-use graphical tool.Conclusion: The tools offered here can be useful for designing treatments combining hyperthermia and chemotherapy targeting molecular chaperones, but also for designing personalized hyperthermic treatment by prior biochemical screening of molecular chaperones. These tools could advantageously replace the description of CEM43.


Subject(s)
Hyperthermia, Induced/methods , Animals , Cell Line , Cell Survival , Humans , Mammals
2.
Int J Hyperthermia ; 36(1): 721-729, 2019.
Article in English | MEDLINE | ID: mdl-31353987

ABSTRACT

Introduction: Models of dose-effect relationships seek systematic and predictive descriptions of how cell survival depends on the level and duration of the stressor. The CEM43 thermal dose model has been empirically derived more than thirty years ago and still serves as a benchmark for hyperthermia protocols despitethe advent of regulatory network models. Objective: In this paper, we propose and realize a simple experimental test to assess whether mechanistic models can prove more reliable indicators for some protocols. We define two time-asymmetric hyperthermia profiles, faster rise than decay or slower rise than decay, for which the CEM43 model predicts the same survival while a regulatory network model predicts significant differences. Materials: Experimental data (both control 37°C and hyperthermia assays) were collected from duplicate HeLa cell cultures. Cells were imaged before and 24, 48 and 72 h after the hyperthermia assay double-stained with fluorescein-5-isothiocyanate (FITC)-labeled annexin V and propidium iodide for detecting cell death. Results: Survival experiments of HeLa cells show that a fast temperature rise followed by a slow decay can be twice more lethal than the opposite, consistently with the prediction of the network model. Conclusions: Using a model reduction approach, we obtained a simple nonlinear dynamic equation that identifies the limited repair capacity as the main factor underlying the dose-asymmetry effect and that could be useful for refining thermal doses for dynamic protocols.


Subject(s)
Hyperthermia, Induced , Models, Biological , Cell Survival , HeLa Cells , Hot Temperature , Humans , Time Factors
3.
Toxicol Lett ; 166(2): 122-30, 2006 Oct 10.
Article in English | MEDLINE | ID: mdl-16870361

ABSTRACT

This paper analysed the toxicity mechanisms of several mycotoxins using Hsp 70 expression, cytoprotection of Vero cells by sub-lethal heat shock (sub-LHS) and Vitamin E. Our aim was (i) to determine whether Citrinin (CTN), Zearalenone (ZEN) and T2 toxin (T2) could induce the expression of Hsp 70, (ii) to check whether or not elevated levels of Hsp and Vitamin E pre-treatment could provide cytoprotection from these mycotoxins, and finally (iii) to emphasize the eventual involvement of oxidative stress on mycotoxin's toxicity. Our study demonstrated that the three examined mycotoxins induced Hsp 70 expression in a dose-dependent manner. A cytoprotective effect of Hsp 70 was obtained when Vero cells were exposed to sub-lethal heat shock followed by a 12h recovery prior to mycotoxins treatment and evidenced by a reduction of their cytolethality. This cytoprotection suggested that Hsp 70 might constitute an important cellular defence mechanism. A cytoprotective action was also obtained although at lesser extent, when cells were pre-treated with an antioxidant agent, the Vitamin E before mycotoxins treatment. This Vitamin E cytoprotection evoked the involvement of oxidative stress in mycotoxins induced toxicity, which was further, confirmed by the reduction of Hsp 70 expression when cells were pre-treated with Vitamin E prior to mycotoxins. Our data clearly shows that oxidative stress is certainly involved in the toxicity of the three studied mycotoxins, Citrinin, Zearalenone and T2 toxin and may therefore constitutes a relevant part in their toxicities; however, at variable extent from one mycotoxin to another.


Subject(s)
Antioxidants/pharmacology , Cytoprotection , HSP70 Heat-Shock Proteins/biosynthesis , Hot Temperature , Mycotoxins/toxicity , Vitamin E/pharmacology , Animals , Cell Survival/drug effects , Chlorocebus aethiops , Citrinin/toxicity , Oxidative Stress/drug effects , T-2 Toxin/toxicity , Vero Cells , Zearalenone/toxicity
4.
Arch Inst Pasteur Tunis ; 83(1-4): 53-62, 2006.
Article in English | MEDLINE | ID: mdl-19388598

ABSTRACT

HSP70 from bacteria to man are known to self-associate to form multiple species suggesting that self-association is related to function. In order to determine the structural basis of HSP70 oligomerization, deletion mutants in the C-terminal domain of HSC70, a constitutive member of the HSP70 family, have been constructed and analyzed for their self-association properties by gel electrophoresis, size-exclusion chromatography and analytical ultracentrifugation. The results of this investigation indicate that, whereas deletion of the GGMP rich C-terminal extremity of HSC70, containing EEVD motif stabilizes the oligomeric species, deletions of either the aD-aE C-terminal helices or the inter-domain hydrophobic linker contribute to the stabilization of the monomeric form. Thus, two non-contiguous regions, located at both ends of the C-terminal domain of the protein, appear to form the contact interface in the oligomers and may interact in a dynamic fashion leading to the formation of several coexisting species.


Subject(s)
HSC70 Heat-Shock Proteins/chemistry , Animals , Chromatography, Gel , Electrophoresis, Polyacrylamide Gel , HSC70 Heat-Shock Proteins/genetics , Hydrophobic and Hydrophilic Interactions , Mutagenesis, Site-Directed , Mutant Proteins/chemistry , Mutant Proteins/genetics , Protein Interaction Domains and Motifs , Protein Multimerization , Protein Structure, Secondary , Protein Structure, Tertiary , Rats , Repetitive Sequences, Amino Acid , Sequence Deletion , Ultracentrifugation
5.
Toxicology ; 207(2): 293-301, 2005 Feb 14.
Article in English | MEDLINE | ID: mdl-15596259

ABSTRACT

Zearalenone (ZEN) is a mycotoxin with several adverse effects in laboratory and domestic animals. The mechanism of ZEN toxicity that involves mainly binding to oestrogen receptors and inhibition of macromolecules synthesis is not fully understood. Using human hepatocytes Hep G2 cells as a model, the aim of this work was (i) to investigate the ability of ZEN to induce heat shock proteins Hsp 70 and (ii) to find out the mechanisms of ZEN cytotoxicity by examining cell proliferation and protein synthesis. Our study demonstrated that ZEN induces Hsp 70 expression in a time and dose-dependant manner; this induction occurs at non-cytotoxic concentrations, it could be therefore considered as a biomarker of toxicity. A cytoprotective effect of Hsp 70 was elicited when Hep G2 cells were exposed to Sub-Lethal heat shock prior to ZEN treatment and evidenced by a reduced ZEN cytolethality. This cytoprotection suggests that Hsp 70 may constitute an important cellular defence mechanism. Finally, our data show that ZEN is cytotoxic in Hep G2 cells by inhibiting cell proliferation and total protein synthesis and pointed out oxidative damage as possible pathway involved in ZEN toxicity; however, other investigations are needed to further confirm Zen induced oxidative stress.


Subject(s)
Estrogens, Non-Steroidal/toxicity , HSP70 Heat-Shock Proteins/biosynthesis , Zearalenone/toxicity , Cell Line, Tumor , Cell Proliferation/drug effects , Cell Survival/drug effects , Cytoprotection , Heat-Shock Response , Humans , Inhibitory Concentration 50 , Protein Biosynthesis/drug effects
6.
Biochemistry ; 39(2): 307-15, 2000 Jan 18.
Article in English | MEDLINE | ID: mdl-10630990

ABSTRACT

HSC70 interacting protein (HIP) is an essential cytoplasmic cochaperone involved in the regulation of HSC70 chaperone activity and the maturation of progesterone receptor. To determine the quaternary structure and the gross conformation of the protein in solution, a wide array of biochemical and biophysical techniques has been used. Size-exclusion chromatography and sedimentation velocity indicate the presence of a single species with a Stokes radius, R(s), of 55 A and a sedimentation coefficient, s degrees (20,w), of 4.34 S. The combination of these data gives a molecular mass of 101 000 Da, a value close to that of the theoretical molecular mass of a dimer (87 090 Da). Sedimentation equilibrium, performed at various protein concentrations and rotor speeds, gives a molecular mass of 88 284 Da, almost in exact agreement with the molecular mass of a dimer. On the basis of these data, a frictional ratio f/f(0) of 1.6 is obtained, suggesting an elongated shape for the HIP dimer. Secondary structure predictions, supported by circular dichroism experiments, indicate that HIP is an almost all alpha-protein, able to form extended coiled coils. Using threading and comparative model building methods, a structural model of a segment of HIP involved in HSC70 binding has been constructed and potential sites of interaction between HIP and HSC70 are proposed on the basis of electrostatic as well as shape complementarity. Altogether, these results indicate that HIP is an elongated dimer, able to bind two HSC70 molecules through its TPR regions, and suggest the existence of a versatile binding site on HSC70 that may be involved in the interaction of the chaperone with the cochaperones or other interacting proteins.


Subject(s)
Carrier Proteins/chemistry , HSP70 Heat-Shock Proteins , Molecular Chaperones/chemistry , Amino Acid Sequence , Binding Sites , Centrifugation, Density Gradient , Chromatography, Gel , Dimerization , Escherichia coli/metabolism , HSC70 Heat-Shock Proteins , Molecular Chaperones/biosynthesis , Molecular Sequence Data , Molecular Weight , Protein Conformation , Protein Structure, Quaternary , Sequence Alignment
7.
J Biol Chem ; 274(7): 4133-9, 1999 Feb 12.
Article in English | MEDLINE | ID: mdl-9933607

ABSTRACT

It has been previously reported that heat shock protein 90 (Hsp90) oligomerizes at high temperatures and displays concomitantly a novel chaperone activity (Yonehara, M., Minami, Y., Kawata, Y., Nagai, J., and Yahara, I. (1996) J. Biol. Chem., 271, 2641-2645). In order to better define these oligomerization properties at high temperatures and to know whether they are influenced by modulators of Hsp90 function, heat-induced oligomerization of highly purified dimeric Hsp90 has been investigated over a wide range of temperature and protein concentrations by native polyacrylamide gel electrophoresis and size exclusion chromatography. Whereas below 50 degreesC, the dimeric form is maintained over a large range of concentrations, at the critical temperature of 50 degreesC, a sharp transition from dimeric to higher order oligomeric species takes place within minutes, in a highly ordered process, suggesting that a conformational change, leading to the appearance of a new oligomerization site, occurs in Hsp90 dimer. Moreover, at and above the critical temperature, the extent of oligomerization increases with Hsp90 concentration. Formation of high order oligomers at high temperatures is sensitive to modulators of Hsp90 function. ATP and geldanamycin, both known to bind to the same pocket of Hsp90, are inhibitors of this process, whereas molybdate, vanadate, and Nonidet P-40, which are thought to increase surface hydrophobicity of the protein, are activators. Thus, oligomerization of Hsp90 at high temperatures may be mediated through hydrophobic interactions that are hindered by ligands and favored by transition metal oxyanions. The fact that the heat-induced oligomerization of Hsp90 is affected by specific ligands that modulate its properties also suggests that this process may be involved in cell protection during heat shock.


Subject(s)
Adenosine Triphosphate/pharmacology , HSP90 Heat-Shock Proteins/metabolism , Metals/pharmacology , Quinones/pharmacology , Benzoquinones , Dimerization , Electrophoresis, Polyacrylamide Gel , Hot Temperature , Lactams, Macrocyclic , Ligands , Molybdenum/pharmacology , Octoxynol , Polyethylene Glycols/pharmacology , Protein Conformation , Vanadates/pharmacology
8.
Eur J Biochem ; 259(1-2): 379-84, 1999 Jan.
Article in English | MEDLINE | ID: mdl-9914517

ABSTRACT

Crystallographic and biochemical studies have indicated that the peptide-binding site of the molecular chaperone HSC70 is located in a small subdomain comprising a beta-sheet motif followed by a helical region, and there is some evidence of the involvement of this site in oligomerization of the protein. To determine the structure of this subdomain in solution and examine its involvement in oligomerization of HSC70, a 17-kDa protein (residues 385-540 of HSC70) consisting mainly of the peptide-binding site was constructed and analyzed for oligomerization properties. This small domain was found to bind peptides and to form oligomers in solution, probably tetramers, which dissociated into monomers on peptide binding in a manner comparable with that observed for the whole protein. Furthermore, in the 60-kDa fragment of HSC70, which is composed of the 17-kDa domain and the 44-kDa ATPase domain, not only were the oligomerization properties conserved, but dissociation of multimeric species into monomers on ATP binding also occurred and peptide stimulation of ATPase activity was restored. These results indicate that the isolated 17-kDa peptide-binding domain is necessary and sufficient for oligomerization of the whole protein, suggesting that the peptide-binding site may be involved in the oligomerization process.


Subject(s)
Carrier Proteins/metabolism , HSP70 Heat-Shock Proteins/metabolism , Adenosine Triphosphatases/analysis , Adenosine Triphosphatases/drug effects , Apoproteins/pharmacology , Binding Sites , Carrier Proteins/genetics , Chromatography, Gel , Cytochrome c Group/pharmacology , Cytochromes c , HSC70 Heat-Shock Proteins , HSP70 Heat-Shock Proteins/genetics , Models, Theoretical , Mutation , Peptide Fragments/genetics , Peptide Fragments/metabolism , Protein Binding , Protein Structure, Secondary , Ultracentrifugation
9.
J Bacteriol ; 179(13): 4143-57, 1997 Jul.
Article in English | MEDLINE | ID: mdl-9209027

ABSTRACT

The genes coding for aspartate transcarbamylase (ATCase) in the deep-sea hyperthermophilic archaeon Pyrococcus abyssi were cloned by complementation of a pyrB Escherichia coli mutant. The sequence revealed the existence of a pyrBI operon, coding for a catalytic chain and a regulatory chain, as in Enterobacteriaceae. Comparison of primary sequences of the polypeptides encoded by the pyrB and pyrI genes with those of homologous eubacterial and eukaryotic chains showed a high degree of conservation of the residues which in E. coli ATCase are involved in catalysis and allosteric regulation. The regulatory chain shows more-extensive divergence with respect to that of E. coli and other Enterobacteriaceae than the catalytic chain. Several substitutions suggest the existence in P. abyssi ATCase of additional hydrophobic interactions and ionic bonds which are probably involved in protein stabilization at high temperatures. The catalytic chain presents a secondary structure similar to that of the E. coli enzyme. Modeling of the tridimensional structure of this chain provides a folding close to that of the E. coli protein in spite of several significant differences. Conservation of numerous pairs of residues involved in the interfaces between different chains or subunits in E. coli ATCase suggests that the P. abyssi enzyme has a quaternary structure similar to that of the E. coli enzyme. P. abyssi ATCase expressed in transgenic E. coli cells exhibited reduced cooperativity for aspartate binding and sensitivity to allosteric effectors, as well as a decreased thermostability and barostability, suggesting that in P. abyssi cells this enzyme is further stabilized through its association with other cellular components.


Subject(s)
Archaea/enzymology , Aspartate Carbamoyltransferase/genetics , Bacterial Proteins/genetics , Amino Acid Sequence , Archaea/genetics , Aspartate Carbamoyltransferase/chemistry , Aspartate Carbamoyltransferase/metabolism , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Base Sequence , Catalysis , Cloning, Molecular , Codon , Conserved Sequence , DNA, Bacterial , Escherichia coli , Escherichia coli Proteins , Gene Expression , Genome, Bacterial , Genomic Library , Heating , Molecular Sequence Data , Molecular Structure , Sequence Analysis, DNA , Sequence Homology, Amino Acid
10.
J Biol Chem ; 272(13): 8744-51, 1997 Mar 28.
Article in English | MEDLINE | ID: mdl-9079709

ABSTRACT

We have previously shown that the molecular chaperone HSC70 self-associates in solution into dimers, trimers, and probably high order oligomers, according to a slow temperature- and concentration-dependent equilibrium that is shifted toward the monomer upon binding of ATP peptides or unfolded proteins. To determine the structural basis of HSC70 self-association, the oligomerization properties of the isolated amino- and carboxyl-terminal domains of this protein have been analyzed by gel electrophoresis, size exclusion chromatography, and analytical ultracentrifugation. Whereas the amino-terminal ATPase domain (residues 1-384) was found to be monomeric in solution even at high concentrations, the carboxyl-terminal peptide binding domain (residues 385-646) exists as a slow temperature- and concentration-dependent equilibrium involving monomers, dimers, and trimers. The association equilibrium constant obtained for this domain alone is on the order of 10(5) M-1, very close to that determined previously for the entire protein, suggesting that self-association of HSC70 is determined solely by its carboxyl-terminal domain. Furthermore, oligomerization of the isolated carboxyl-terminal peptide binding domain is, like that of the entire protein, reversed by peptide binding, indicating that self-association of the protein may be mediated by the peptide binding site and, as such, should play a role in the regulation of HSC70 chaperone function. A general model for self-association of HSP70 is proposed in which the protein is in equilibrium between two states differing by the conformation of their carboxyl-terminal domain and their self-association properties.


Subject(s)
Carrier Proteins/chemistry , HSP70 Heat-Shock Proteins/chemistry , Binding Sites , Chromatography, Gel , Electrophoresis, Polyacrylamide Gel , HSC70 Heat-Shock Proteins , Models, Molecular , Molecular Weight , Protein Conformation , Structure-Activity Relationship , Temperature , Ultracentrifugation
11.
J Biol Chem ; 271(31): 18471-6, 1996 Aug 02.
Article in English | MEDLINE | ID: mdl-8702492

ABSTRACT

In a previous study, we showed that the molecular chaperone HSC70 self-associates in solution in a reversible and likely unlimited fashion. Here, we examine the influence of nucleotides, nucleotide analogs, peptides, and unfolded proteins on the self-association properties of this protein. Whereas in the presence of ADP, HSC70 exists as a slow, concentration- and temperature-dependent monomer-oligomer equilibrium, in the presence of ATP, the protein is essentially monomeric, indicating that ATP shifts this equilibrium toward the monomer by stabilizing the monomer. Dissociation of oligomers into monomers is also obtained with the slowly hydrolyzable ATP analogs, adenosine 5'-O-(thiotriphosphate) and 5'-adenylyl-beta,gamma-imidodiphosphate, or the complex between ADP and the phosphate analog, BeF3, indicating that binding but not hydrolysis of ATP is necessary and sufficient for the stabilization of HSC70 monomer. Furthermore, binding of short peptides or permanently unfolded proteins to the peptide binding site of HSC70 promotes the dissociation of oligomers into monomers, suggesting that protein substrates are able to compete with HSC70 for the same binding site. Because the release of peptides or unfolded proteins from HSC70 has also been shown to require ATP binding, these results indicate that dissociation of oligomers is controlled by a mechanism similar to that of release of protein substrates and suggest that binding of HSC70 to itself occurs via the peptide binding site and mimics binding of HSC70 to protein substrates.


Subject(s)
Carrier Proteins/chemistry , Molecular Chaperones/chemistry , Adenosine Diphosphate/analysis , Adenosine Diphosphate/metabolism , Adenosine Diphosphate/pharmacology , Adenosine Triphosphate/analysis , Adenosine Triphosphate/metabolism , Adenosine Triphosphate/pharmacology , Animals , Binding Sites , Carrier Proteins/metabolism , Cattle , HSC70 Heat-Shock Proteins , HSP70 Heat-Shock Proteins/chemistry , HSP70 Heat-Shock Proteins/metabolism , In Vitro Techniques , Kinetics , Models, Chemical , Molecular Chaperones/metabolism , Nucleotides/analysis , Nucleotides/metabolism , Nucleotides/pharmacology , Peptides/metabolism , Peptides/pharmacology , Protein Conformation/drug effects , Protein Folding , Proteins/chemistry , Proteins/metabolism , Proteins/pharmacology , Temperature
12.
Biochemistry ; 34(48): 15654-60, 1995 Dec 05.
Article in English | MEDLINE | ID: mdl-7495794

ABSTRACT

The quaternary structural change associated with the homotropic cooperative interactions in Escherichia coli aspartate transcarbamylase (ATCase) is accompanied by various tertiary structural modifications; the most notable one involves the 240s loop formed by residues 230--245 of the catalytic chain. In order to monitor local conformational changes in this region by fluorescence spectroscopy, Tyr-240 has been replaced by a Trp residue, in a mutant enzyme, in which both naturally occurring Trp residues in positions 209 and 284 of the catalytic chains had previously been substituted by Phe residues. This F209F284W240-ATCase still displays homotropic cooperativity for aspartate and undergoes the same T to R quaternary structure change as does the wild-type enzyme. Upon binding of the bisubstrate analogue N-(phosphonoacetyl)-L-aspartate, the fluorescence emission spectrum of this mutant shows a red shift directly proportional to the fraction of catalytic sites occupied by this compound, a maximum value of 4 nm being attained when all six active sites are ligated. An identical shift is observed with the catalytic subunits of this modified enzyme, when all three active sites are occupied. In contrast, the quaternary structural change of the F209F284W240-ATCase, monitored by small-angle X-ray scattering, is complete when only four out of six catalytic sites are occupied. Thus, the 240s loop adopts its final conformation only when the neighboring active site is bound.


Subject(s)
Aspartate Carbamoyltransferase/chemistry , Allosteric Site , Aspartate Carbamoyltransferase/metabolism , Binding Sites , Escherichia coli/enzymology , Fluorescent Dyes , Protein Structure, Secondary , Scattering, Radiation , Spectrometry, Fluorescence , Substrate Specificity , X-Rays
13.
Biochemistry ; 34(46): 15282-90, 1995 Nov 21.
Article in English | MEDLINE | ID: mdl-7578144

ABSTRACT

The self-association properties of the molecular chaperone HSC70 have been analyzed by a wide range of biochemical and biophysical techniques. Nondenaturing gel electrophoresis and cross-linking studies show the presence of multiple species going from monomer to at least trimer. Size-exclusion chromatography gives two overlapping peaks, a major one corresponding to species having the molecular mass of monomer (70 kDa) and a minor broad one corresponding to species with a molecular mass range of 150-300 kDa. Progressive dilution of the protein leads to an increase in the size of the monomer peak at the expense of that of the oligomeric peak, thus indicating a concentration-dependent chemical equilibrium. Sedimentation velocity reveals the presence of three species, whose proportions were dependent on concentration, but whose sedimentation coefficients, s20,w, of 4.3, 6.6, and 8.5 S did not vary with concentration, indicative of a slowly equilibrating system. Sedimentation equilibrium studies confirmed these results and showed a dissociation into monomers at low concentrations and an association into dimers and trimers at high concentrations. The multiple sedimentation equilibrium datasets, obtained at various initial loading concentrations as well as different rotor speeds, were fitted to a single set of equilibrium constants by a monomer-dimer-trimer association model in which the association constants for the monomer-dimer and dimer-trimer equilibrium were respectively K1-2 = 1.1 x 10(5) M-1 and K2-3 = 0.9 x 10(5) M-1. Interestingly, an isodesmic, indefinite type of association describes the data almost equally well with a single constant of 1.2 x 10(5) M-1. (ABSTRACT TRUNCATED AT 250 WORDS)


Subject(s)
Carrier Proteins/chemistry , HSP70 Heat-Shock Proteins/chemistry , Adenosine Triphosphate/pharmacology , Chromatography, Gel , Cross-Linking Reagents , Electrophoresis, Polyacrylamide Gel , HSC70 Heat-Shock Proteins , Macromolecular Substances , Recombinant Proteins/chemistry , Thermodynamics , Ultracentrifugation
14.
J Mol Biol ; 246(1): 132-43, 1995 Feb 10.
Article in English | MEDLINE | ID: mdl-7853393

ABSTRACT

Aspartate transcarbamylase from Escherichia coli is stimulated by ATP and feedback-inhibited by CTP and UTP. Previous work allowed the identification of the hydrophobic interface between the two domains of the regulatory chain as a structural element specifically involved in the transmission of the ATP regulatory signal toward the catalytic sites. The present work describes the identification of a cluster of amino acid interactions at an interface between the regulatory chains and the catalytic chains of the enzyme as another structural feature involved in the transmission of the ATP regulatory signal but not in those of CTP and UTP. These interactions involve residues 146 to 149 of the regulatory chain and residues 242 to 245 of the catalytic chain. Perturbations of these interactions also alter to various extents the co-operativity between the catalytic sites for aspartate binding. These findings are in agreement with the idea that the primary effect of ATP might consist, in part, of a modulation of the stability of the interfaces between regulatory and catalytic subunits, thereby facilitating the T to R transition induced by aspartate binding, as was put forward in two recently proposed models, the "effector modulated transition" model and the "nucleotide perturbation" model. This does not exclude that this cluster of interactions could also act as a relay to transmit the ATP regulatory signal to the catalytic sites according to the previously proposed "primary-secondary effects" model.


Subject(s)
Adenosine Triphosphate/metabolism , Aspartate Carbamoyltransferase/metabolism , Escherichia coli/enzymology , Protein Conformation , Allosteric Regulation , Amino Acids/metabolism , Aspartate Carbamoyltransferase/chemistry , Aspartate Carbamoyltransferase/genetics , Aspartic Acid/metabolism , Binding, Competitive , Cytidine Triphosphate/metabolism , Kinetics , Mutation/physiology , Uridine Triphosphate/metabolism
15.
J Mol Biol ; 242(2): 139-49, 1994 Sep 16.
Article in English | MEDLINE | ID: mdl-8089837

ABSTRACT

The regulatory chain of E. coli aspartate transcarbamylase (E.C. 2.1.3.2) is folded into two domains. The allosteric domain harbours the regulatory site where the activator ATP and the inhibitors CTP and UTP bind competitively. The zinc domain ensures the contact with the catalytic chains. The interface between these two domains is hydrophobic, and involves the carboxy-terminal part of the helix H2' of the allosteric domain and several residues of the zinc domain. This structural feature mediates the transmission of the ATP regulatory signal. In the present work, site-directed mutagenesis and molecular modelling were used to investigate the role of specific amino acid residues in this process. The modifications of the hydrophobic core which are expected to alter the position of helix H2' reduce or abolish the sensitivity of the enzyme to ATP. The properties of the mutants and the results of modelling are fully consistent and suggest that a movement of helix H2' is part of the mechanism of activation by ATP. A model is proposed to account for the transmission of the ATP signal from the regulatory site to the interface between the regulatory and catalytic chains.


Subject(s)
Adenosine Triphosphate/metabolism , Aspartate Carbamoyltransferase/metabolism , Escherichia coli/enzymology , Allosteric Site , Binding Sites , Cytidine Triphosphate/metabolism , Enzyme Activation , Kinetics , Models, Molecular , Mutagenesis, Site-Directed , Uridine Triphosphate/metabolism
16.
Proteins ; 19(3): 230-43, 1994 Jul.
Article in English | MEDLINE | ID: mdl-7937736

ABSTRACT

In Saccharomyces cerevisiae the first two reactions of the pyrimidine pathway are catalyzed by a multifunctional protein which possesses carbamylphosphate synthetase and aspartate transcarbamylase activities. Genetic and proteolysis studies suggested that the ATCase activity is carried out by an independently folded domain. In order to provide structural information for ongoing mutagenesis studies, a model of the three-dimensional structure of this domain was generated on the basis of the known X-ray structure of the related catalytic subunit from E. coli ATCase. First, a model of the catalytic monomer was built and refined by energy minimization. In this structure, the conserved residues between the two proteins were found to constitute the hydrophobic core whereas almost all the mutated residues are located at the surface. Then, a trimeric structure was generated in order to build the active site as it lies at the interface between adjacent chains in the E. coli catalytic trimer. After docking a bisubstrate analog into the active site, the whole structure was energy minimized to regularize the interactions at the contact areas between subunits. The resulting model is very similar to that obtained for the E. coli catalytic trimer by X-ray crystallography, with a remarkable conservation of the structure of the active site and its vicinity. Most of the interdomain and intersubunit interactions that are essential for the stability of the E. coli catalytic trimer are maintained in the yeast enzyme even though there is only 42% identity between the two sequences. Free energy calculations indicate that the trimeric assembly is more stable than the monomeric form. Moreover an insertion of four amino acids is localized in a loop which, in E. coli ATCase, is at the surface of the protein. This insertion exposes hydrophobic residues to the solvent. Interestingly, such an insertion is present in all the eukaryotic ATCase genes sequences so far, suggesting that this region is interacting with another domain of the multifunctional protein.


Subject(s)
Aspartate Carbamoyltransferase/chemistry , Computer Simulation , Models, Molecular , Saccharomyces cerevisiae/enzymology , Amino Acid Sequence , Aspartate Carbamoyltransferase/metabolism , Aspartic Acid/analogs & derivatives , Aspartic Acid/chemistry , Aspartic Acid/metabolism , Binding Sites , Electricity , Escherichia coli/enzymology , Evaluation Studies as Topic , Ions , Molecular Sequence Data , Phosphonoacetic Acid/analogs & derivatives , Phosphonoacetic Acid/chemistry , Phosphonoacetic Acid/metabolism , Protein Conformation , Sequence Alignment , Sequence Homology, Amino Acid
17.
Eur J Biochem ; 221(1): 121-8, 1994 Apr 01.
Article in English | MEDLINE | ID: mdl-8168501

ABSTRACT

The 70-kDa heat-shock cognate protein (HSC70), a constitutively expressed protein in mammalian cells, plays a major role in several cellular processes such as protein folding and assembly, uncoating of clathrin-coated vesicles and transport of protein through membranes. HSC70 has been overexpressed in Escherichia coli in a soluble form using a designed two-cistron expression vector, and purified to homogeneity in a two-step procedure involving ion-exchange and affinity chromatography. Up to 20 mg of pure protein could be obtained from 11 of cell culture. Amino-terminal sequencing of the recombinant protein gives the expected sequence, and non-denaturing gel electrophoresis as well as gel filtration analysis reveal the presence of self-associating species that could be dissociated by ATP. Crosslinking studies confirm the presence of multiple species and the dissociating effect of ATP. Temperatures above 42 degrees C induce the aggregation of HSC70; ATP shifts this effect to higher temperatures. The recombinant protein displays a low intrinsic ATPase activity that can be stimulated about threefold by binding to apocytochrome c, a permanently unfolded protein, while native cytochrome c has no effect on the ATPase activity indicating that recombinant HSC70 binds specifically unfolded protein but not their native counterpart. Thus, efficient production of recombinant HSC70 having structural and functional properties comparable to those of the natural protein could be achieved, thereby allowing the molecular basis of the chaperone function and its regulation through ATP hydrolysis to be probed.


Subject(s)
Carrier Proteins/genetics , Escherichia coli/genetics , Gene Expression , HSP70 Heat-Shock Proteins , Adenosine Triphosphatases/metabolism , Adenosine Triphosphate/pharmacology , Amino Acid Sequence , Base Sequence , Biological Transport , Carrier Proteins/chemistry , Carrier Proteins/isolation & purification , Clathrin , Genetic Vectors , HSC70 Heat-Shock Proteins , Hot Temperature , Macromolecular Substances , Molecular Sequence Data , Protein Folding , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Restriction Mapping , Sequence Analysis
19.
Biochemistry ; 31(49): 12504-13, 1992 Dec 15.
Article in English | MEDLINE | ID: mdl-1463737

ABSTRACT

Aspartate transcarbamylase (EC 2.1.3.2) contains two tryptophan residues in position 209 and 284 of the catalytic chains (c) and no such chromophore in the regulatory chains (r). Thus, as a dodecamer [(c3)2(r2)3] the native enzyme molecule contains 12 tryptophan residues. The present study of the regulatory conformational changes in this enzyme is based on the fluorescence properties of these intrinsic probes. Site-directed mutagenesis was used in order to differentiate the respective contributions of the two tryptophans to the fluorescence properties of the enzyme and to identify the mobility of their environment in the course of the different regulatory processes. Each of these tryptophan residues gives two independent fluorescence decays, suggesting that the catalytic subunit exists in two slightly different conformational states. The binding of the substrate analog N-phosphonacetyl-L-aspartate promotes the same fluorescence signal whether or not the catalytic subunits are associated with the regulatory subunits, suggesting that the substrate-induced conformational change of the catalytic subunit is the essential trigger for the quaternary structure transition involved in cooperativity. The binding of the substrate analog affects mostly the environment of tryptophan 284, while the binding of the activator ATP affects mostly the environment of tryptophan 209, confirming that this activator acts through a mechanism different from that involved in homotropic cooperativity.


Subject(s)
Aspartate Carbamoyltransferase/chemistry , Mutagenesis, Site-Directed , Tryptophan/analysis , Aspartate Carbamoyltransferase/genetics , Aspartate Carbamoyltransferase/metabolism , Aspartic Acid/analogs & derivatives , Aspartic Acid/metabolism , Catalysis , Kinetics , Models, Chemical , Models, Molecular , Phosphonoacetic Acid/analogs & derivatives , Phosphonoacetic Acid/metabolism , Protein Conformation , Spectrometry, Fluorescence , Substrate Specificity
20.
Proc Natl Acad Sci U S A ; 88(20): 9180-3, 1991 Oct 15.
Article in English | MEDLINE | ID: mdl-1924381

ABSTRACT

Aspartate transcarbamoylase (EC 2.1.3.2) is extensively studied as a model for cooperativity and allostery. This enzyme shows cooperativity between the catalytic sites, and its activity is feedback inhibited by CTP and activated by ATP. These regulatory processes involve several interfaces between catalytic and regulatory chains as well as between domains within these two types of chains. As far as the regulatory chain is concerned, its two domains are in contact through a hydrophobic interface, in which a tyrosine residue is inserted in a pocket involving two leucine residues of the allosteric domain and a valine and a leucine residue of the zinc domain. To probe the possible implication of this hydrophobic core in the CTP and ATP regulatory effect, the tyrosine was replaced by a phenylalanine through oligonucleotide-directed mutagenesis. Interestingly, the resulting mutant shows a complete inversion of the ATP effect; it is now inhibited by ATP instead of being activated by this nucleotide triphosphate. This mutant remains normally sensitive to the feedback inhibitor CTP. This result shows that the hydrophobic interface between the two domains of the regulatory chain plays an important role in the discrimination between the regulatory signals promoted by the two allosteric effectors.


Subject(s)
Adenosine Triphosphate/metabolism , Aspartate Carbamoyltransferase/metabolism , Escherichia coli/enzymology , Mutagenesis, Site-Directed , Phenylalanine , Tyrosine , Adenosine Triphosphate/pharmacology , Allosteric Regulation , Amino Acid Sequence , Aspartate Carbamoyltransferase/chemistry , Aspartate Carbamoyltransferase/genetics , Enzyme Activation , Escherichia coli/genetics , Kinetics , Macromolecular Substances , Models, Molecular , Protein Conformation , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism
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