Exploration of the candidate beneficial bacteria for Penaeus vannamei culture by core microbiome analysis using amplicon sequencing.

Globally, Penaeus vannamei is the vital species in aquaculture production. Beneficial bacterial exploration of gut, sediment, and water were investigated in P. vannamei culture using Illumina Miseq sequencing of 16S RNA V3-V4 hypervariable regions. Predominant phyla identified were Proteobacteria, Tenericutes, Bacteroidetes in gut; Proteobacteria, Bacteroidetes, Planctomycetes in sediment and Cyanobacteria, Proteobacteria, and Planctomycetes in water. In total, 46 phyla, 509 families and 902 genera; 70 phyla, 735 families and 1255 genera; 55 phyla, 580 families and 996 genera were observed in gut, sediment and water, respectively. Diversity of microbial communities in respect of observed Operational Taxonomic Units, diversity indices (Shannon and Simpson), richness index (Chao1) were significantly high P (<0.05) in 60 DoC in gut and 30 DoC in sediment. Beta diversity indicated separate clusters for bacterial communities in gut, sediment and water samples and formation of distinct community profiles. Core microbiome in P. vannamei rearing ponds over a time consisted of 9, 21, and 20 OTUs in gut, rearing water and sediment, respectively. This study helps to intervene with suitable beneficial microbes to establish an aquaculture system thereby contributes to enhance the productivity, improve water quality and pond bottom condition, and control the pathogenic agents at each stage of the culture.

Methodological approach for the collection and simultaneous estimation of greenhouse gases emission from aquaculture ponds.

Global warming/climate change is the greatest environmental threat of our time. Rapidly developing aquaculture sector is an anthropogenic activity, the contribution of which to global warming is little understood, and estimation of greenhouse gases (GHGs) emission from the aquaculture ponds is a key practice in predicting the impact of aquaculture on global warming. A comprehensive methodology was developed for sampling and simultaneous analysis of GHGs, carbon dioxide (CO2), methane (CH4), and nitrous oxide (N2O) from the aquaculture ponds. The GHG fluxes were collected using cylindrical acrylic chamber, air pump, and tedlar bags. A cylindrical acrylic floating chamber was fabricated to collect the GHGs emanating from the surface of aquaculture ponds. The sampling methodology was standardized and in-house method validation was established by achieving linearity, accuracy, precision, and specificity. GHGs flux was found to be stable at 10 ± 2 °C of storage for 3 days. The developed methodology was used to quantify GHGs in the Pacific white shrimp Penaeus vannamei and black tiger shrimp Penaeus monodon culture ponds for a period of 4 months. The rate of emission of carbon dioxide was found to be much greater when compared to other two GHGs. Average GHGs emission in gha-1 day-1 during the culture was comparatively high in P.vannamei culture ponds.