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1.
J Thromb Haemost ; 16(10): 2057-2069, 2018 10.
Article in English | MEDLINE | ID: mdl-30053349

ABSTRACT

Essentials AZD9684 is a potent inhibitor of carboxypeptidase U (CPU, TAFIa, CPB2). The effect of AZD9684 on fibrinolysis was investigated in four in vitro systems. The CPU system also attenuates fibrinolysis in more advanced hemostatic systems. The size of the observed effect on fibrinolysis is dependent on the exact experimental conditions. SUMMARY: Background Carboxypeptidase U (CPU, carboxypeptidase B2, activated thrombin-activatable fibrinolysis inhibitor) is a basic carboxypeptidase that attenuates fibrinolysis. This characteristic has raised interest in the scientific community and pharmaceutical industry for the development of inhibitors as profibrinolytic agents. Objectives Little is known about the contribution of CPU to clot resistance in more advanced hemostatic models, which include blood cells and shear stress. The aim of this study was to evaluate the effects of the CPU system in in vitro systems for fibrinolysis with different grades of complexity. Methods The contribution of the CPU system was evaluated in the following systems: (i) plasma clot lysis; (ii) rotational thromboelastometry (ROTEM) in whole blood; (iii) front lysis with confocal microscopy in platelet-free and platelet-rich plasma; and (iv) a microfluidic system with whole blood under arterial shear stress. Experiments were carried out in the presence or absence of AZD9684, a specific CPU inhibitor. Results During plasma clot lysis, addition of AZD9684 resulted in 33% faster lysis. In ROTEM, the lysis onset time was decreased by 38%. For both clot lysis and ROTEM, an AZD9684 dose-dependent response was observed. CPU inhibition in front lysis experiments resulted in 47% and 50% faster lysis for platelet-free plasma and platelet-rich plasma, respectively. Finally, a tendency for faster lysis was observed only in the microfluidic system when AZD9684 was added. Conclusions Overall, these experiments provide novel evidence that the CPU system can also modulate fibrinolysis in more advanced hemostatic systems. The extent of the effects appears to be dependent upon the exact experimental conditions.


Subject(s)
Blood Coagulation Tests/methods , Butyrates/pharmacology , Carboxypeptidase B2/antagonists & inhibitors , Fibrinolysis/drug effects , Fibrinolytic Agents/pharmacology , Protease Inhibitors/pharmacology , Pyridines/pharmacology , Carboxypeptidase B2/blood , Humans , Kinetics
2.
J Thromb Haemost ; 16(2): 342-348, 2018 02.
Article in English | MEDLINE | ID: mdl-29194929

ABSTRACT

Essentials Little is known of procarboxypeptidase U (proCPU) in cerebrospinal fluid (CSF) of stroke patients. ProCPU levels were studied in CSF of controls and non-thrombolyzed acute ischemic stroke patients. ProCPU is elevated in CSF of stroke patients compared with controls. ProCPU in CSF correlates with stroke progression, outcome, and blood-brain barrier dysfunction. SUMMARY: Background Procarboxypeptidase U (proCPU, TAFI, proCPB2), the zymogen of CPU, which is a potent antifibrinolytic enzyme and a modulator of inflammation, has previously been investigated in plasma of stroke patients, but so far, no information on the proCPU levels in cerebrospinal fluid (CSF) during acute ischemic stroke (AIS) is available. Objectives This case-control observational study investigates proCPU in CSF of AIS patients compared with controls with an intact blood-brain barrier (BBB) and evaluates the relationship of CSF/plasma proCPU ratios with stroke parameters. Methods A sensitive HPLC-based enzymatic assay was used to determine proCPU levels in CSF of non-thrombolyzed patients in the hyperacute phase (< 24 h after onset) of AIS (n = 72). Individuals (n = 32) without stroke, an intact BBB and no apparent abnormalities in biochemical and microbiological tests, served as controls. Relations between the CSF/plasma proCPU ratio and (i) stroke severity, (ii) stroke progression/recurrence, (iii) stroke outcome and (iv) BBB dysfunction (CSF/serum albumin ratio) were assessed. Results Mean (SEM) proCPU levels were elevated in the CSF of stroke patients compared with controls (4.36 (0.23) U L-1 vs. 3.50 (0.23) U L-1 ). Higher median [IQR] CSF/plasma proCPU ratios were found in patients with stroke progression ((6.0 [4.2-6.9]) × 10-3 ) and poor outcome ((6.4 [3.9-7.0]) × 10-3 ) after 3 months (modified Rankin Scale; mRS > 3) compared with patients without progression ((3.9 [2.7-5.4]) × 10-3 ) or better outcome ((4.0 [2.8-5.0]) × 10-3 ). In stroke patients with a disrupted BBB, proCPU ratios were higher compared with stroke patients with an intact BBB ((6.4 [5.8-9.0]) × 10-3 vs. (3.7 [2.8-5.0]) × 10-3 ). Conclusions ProCPU is increased in CSF during hyperacute ischemic stroke and is associated with stroke progression and outcome after 3 months, most likely due to BBB dysfunction in the hyperacute phase of ischemic stroke.


Subject(s)
Blood-Brain Barrier/metabolism , Brain Ischemia/cerebrospinal fluid , Carboxypeptidase B2/cerebrospinal fluid , Enzyme Precursors/cerebrospinal fluid , Stroke/cerebrospinal fluid , Aged , Aged, 80 and over , Biomarkers/cerebrospinal fluid , Blood-Brain Barrier/physiopathology , Brain Ischemia/diagnosis , Brain Ischemia/physiopathology , Capillary Permeability , Case-Control Studies , Disease Progression , Female , Humans , Male , Middle Aged , Prognosis , Stroke/diagnosis , Stroke/physiopathology , Time Factors , Up-Regulation
3.
Protein Eng Des Sel ; 30(3): 217-224, 2017 03 01.
Article in English | MEDLINE | ID: mdl-28062644

ABSTRACT

Most kinetic studies of prolyl oligopeptidase (PREP) were performed with the porcine enzyme using modified peptide substrates. Yet recent biophysical studies used the human homolog. Therefore, the aim of this study was to compare the kinetic behavior of human and porcine PREP, as well as to find a suitable method to study enzyme kinetics with an unmodified biological substrate. It was found that human PREP behaves identically to the porcine homolog, displaying a double bell-shaped pH profile and a pH-dependent solvent kinetic isotope effect of the kcat/Km, features that set it apart from the related exopeptidase dipeptidyl peptidase IV (DPP IV). However, the empirical temperature coefficient Q10, describing the temperature dependency of the kinetic parameters and the non-linear Arrhenius plot of kcat/Km are common characteristics between PREP and DPP IV. The results also demonstrate the feasibility of microcalorimetry for measuring turn-over of proline containing peptides.


Subject(s)
Mitochondrial Proteins/chemistry , Serine Endopeptidases/chemistry , Animals , Enzyme Stability , Humans , Hydrogen-Ion Concentration , Kinetics , Mitochondrial Proteins/metabolism , Protein Domains , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Serine Endopeptidases/metabolism , Swine
4.
Exp Lung Res ; 42(6): 277-85, 2016 08.
Article in English | MEDLINE | ID: mdl-27437782

ABSTRACT

UNLABELLED: Aim/Purpose of the Study: Activation of the renin-angiotensin system leading to increased angiotensin-(1-7) (Ang-(1-7)) and decreased angiotensin 2 (Ang 2) levels may be a new therapeutic approach to reduce acute lung injury. Prolylcarboxypeptidase (PRCP) and prolyloligopeptidase (PREP) are capable of hydrolyzing Ang 2 into Ang-(1-7). However, their relation with circulating Ang 2 levels after lung ischemia-reperfusion injury (LIRI) has never been explored. This study determines whether the activity and expression of PRCP and PREP in plasma and lung tissue is related to circulating Ang 2 levels in a murine model of LIRI. MATERIALS AND METHODS: LIRI in Swiss mice (6 animals per group) was induced by temporary left lung hilar clamping (1 h) followed by 0, 1 or 24 h of reperfusion. Animals in the sham group received thoracotomy only. PRCP activity was measured via RP-HPLC, PREP activity using a fluorogenic substrate and plasma Ang 2 levels via ELISA. Western blotting was used to determine the PRCP and PREP protein expression profiles in left lung tissue. RESULTS: Plasma Ang 2 levels significantly rise after lung ischemia and remain increased after 1 h and 24 h of reperfusion compared to the sham group. While a significant decrease in plasma PREP activity was found after 24 h of reperfusion, a transient increase in plasma PRCP activity was observed after ischemia. However, no correlation with plasma Ang 2 levels could be demonstrated. The activity profiles of PRCP and PREP and the protein expression of PRCP in the lung tissues remained unchanged after LIRI. CONCLUSIONS: LIRI causes a dysregulation of circulating Ang 2 levels and plasma PREP activity, although no direct link between both phenomena could be shown. The activity profile of pulmonary PRCP and PREP was not significantly changed after LIRI, which implies a minor role for local PRCP and PREP in the ischemic lung itself.


Subject(s)
Angiotensin II/blood , Carboxypeptidases/blood , Lung Injury/metabolism , Renin-Angiotensin System , Reperfusion Injury/metabolism , Serine Endopeptidases/blood , Animals , Disease Models, Animal , Female , Lung/enzymology , Lung Injury/physiopathology , Mice , Prolyl Oligopeptidases , Reperfusion Injury/physiopathology
5.
J Thromb Haemost ; 13(12): 2227-32, 2015 Dec.
Article in English | MEDLINE | ID: mdl-26340515

ABSTRACT

BACKGROUND: Two decades after its discovery, carboxypeptidase U (CPU, CPB2 or TAFIa) has become a compelling drug target in thrombosis research. However, given the difficulty of measuring CPU in the blood circulation and the demanding sample collecton requirements, previous clinical studies focused mainly on measuring its inactive precursor, proCPU (proCPB2 or TAFI). OBJECTIVES: Using a sensitive and specific enzymatic assay, we investigated plasma CPU levels in patients presenting with acute myocardial infarction (AMI) and in controls. METHODS: In this case-control study, peripheral arterial blood samples were collected from 45 patients with AMI (25 with ST segment elevation myocardial infarction [STEMI], 20 with non-ST segment elevation myocardial infarction [NSTEMI]) and 42 controls. Additionally, intracoronary blood samples were collected from 11 STEMI patients during thrombus aspiration. Subsequently, proCPU and CPU plasma concentrations in all samples were measured by means of an activity-based assay, using Bz-o-cyano-Phe-Arg as a selective substrate. RESULTS: CPU activity levels were higher in patients with AMI (median LOD-LOQ, range 0-1277 mU L(-1) ) than in controls (median < LOD, range 0-128 mU L(-1) ). No correlation was found between CPU levels and AMI type (NSTEMI [median between LOD-LOQ, range 0-465 mU L(-1) ] vs. STEMI [median between LOD-LOQ, range 0-1277 mU L(-1) ]). Intracoronary samples (median 109 mU L(-1) , range 0-759 mU L(-1) ) contained higher CPU levels than did peripheral samples (median between LOD-LOQ, range 0-107 mU L(-1) ), indicating increased local CPU generation. With regard to proCPU, we found lower levels in AMI patients (median 910 U L(-1) , range 706-1224 U L(-1) ) than in controls (median 1010 U L(-1) , range 753-1396 U L(-1) ). CONCLUSIONS: AMI patients have higher plasma CPU levels and lower proCPU levels than controls. This finding indicates in vivo generation of functional active CPU in patients with AMI.


Subject(s)
Carboxypeptidase B2/blood , Coronary Thrombosis/blood , Myocardial Infarction/blood , Aged , Biomarkers/blood , Case-Control Studies , Coronary Thrombosis/diagnosis , Coronary Thrombosis/enzymology , Coronary Thrombosis/therapy , Enzyme Activation , Female , Humans , Male , Middle Aged , Myocardial Infarction/diagnosis , Myocardial Infarction/enzymology , Myocardial Infarction/therapy , Thrombectomy , Up-Regulation
6.
Br J Pharmacol ; 166(3): 1097-113, 2012 Jun.
Article in English | MEDLINE | ID: mdl-22233220

ABSTRACT

BACKGROUND AND PURPOSE: The aggregation of α-synuclein is connected to the pathology of Parkinson's disease and prolyl oligopeptidase (PREP) accelerates the aggregation of α-synuclein in vitro. The aim of this study was to investigate the effects of a PREP inhibitor, KYP-2047, on α-synuclein aggregation in cell lines overexpressing wild-type or A30P/A53T mutant human α-syn and in the brains of two A30P α-synuclein transgenic mouse strains. EXPERIMENTAL APPROACH: Cells were exposed to oxidative stress and then incubated with the PREP inhibitor during or after the stress. Wild-type or transgenic mice were treated for 5 days with KYP-2047 (2 × 3 mg·kg(-1) a day). Besides immunohistochemistry and thioflavin S staining, soluble and insoluble α-synuclein protein levels were measured by Western blot. α-synuclein mRNA levels were quantified by PCR. The colocalization of PREP and α-synuclein,and the effect of KYP-2047 on cell viability were also investigated. KEY RESULTS: In cell lines, oxidative stress induced a robust aggregation of α-synuclein,and low concentrations of KYP-2047 significantly reduced the number of cells with α-synuclein inclusions while abolishing the colocalization of α-synuclein and PREP. KYP-2047 significantly reduced the amount of aggregated α-synuclein,and it had beneficial effects on cell viability. In the transgenic mice, a 5-day treatment with the PREP inhibitor reduced the amount of α-synuclein immunoreactivity and soluble α-synuclein protein in the brain. CONCLUSIONS AND IMPLICATIONS: The results suggest that the PREP may play a role in brain accumulation and aggregation of α-synuclein, while KYP-2047 seems to effectively prevent these processes.


Subject(s)
Parkinsonian Disorders/drug therapy , Proline/analogs & derivatives , Serine Endopeptidases/metabolism , Serine Proteinase Inhibitors/pharmacology , alpha-Synuclein/metabolism , Animals , Blotting, Western , Brain/drug effects , Brain/enzymology , Brain/metabolism , Brain/pathology , Cell Culture Techniques , Cell Line, Tumor , Cell Survival/drug effects , Humans , Male , Mice , Mice, Inbred C57BL , Mice, Transgenic , Microscopy, Fluorescence , Motor Activity/drug effects , Oxidative Stress/drug effects , Parkinsonian Disorders/enzymology , Parkinsonian Disorders/metabolism , Parkinsonian Disorders/pathology , Proline/pharmacology , Prolyl Oligopeptidases , Reverse Transcriptase Polymerase Chain Reaction , Transfection , alpha-Synuclein/genetics
7.
Matrix Biol ; 28(3): 160-9, 2009 Apr.
Article in English | MEDLINE | ID: mdl-19275936

ABSTRACT

The extracellular matrix protein 1 (ECM1) is an 85 kDa secreted glycoprotein, comprising four variants and playing a pivotal role in endochondral bone formation, angiogenesis, and tumour biology. A computational model for the three-dimensional structure of ECM1a was determined to identify the potential and/or concealed region(s) for binding with candidate partners in human skin. Multiple alignments for the secondary structure of ECM1a and b revealed similarity with serum albumin. The N-terminal domain of ECM1a consists mainly of alpha-helices (alphaD1), while the remaining three domains, namely serum albumin subdomain-like (SASDL) domains 2-4, were topologically comparable with the subdomain of the third serum albumin domain. Yeast-two-hybrid screening of a human foreskin cDNA library using both full-length ECM1a and the hot spot region for ECM1 gene mutations in lipoid proteinosis, an autosomal recessive genodermatosis (complete SASDL2 and the linker to SASDL3: aa177-aa361), as bait, isolated seven extracellular proteins. The site-specific interaction of ECM1a with two of these candidate binders, laminin 332 beta-3 chain and fibulin-3, was confirmed by in vitro and in vivo co-immunoprecipitation experiments. Immunohistologically both binders co-localized with ECM1 in human skin. Together, ECM1 is a multifunctional binding core and/or a scaffolding protein interacting with a variety of extracellular and structural proteins, contributing to the maintenance of skin integrity and homeostasis. Hence, disruption of the ECM1 function may cause the failure of multi-communication among the surrounding skin interstitial molecules, as seen in lipoid proteinosis pathology.


Subject(s)
Cell Adhesion Molecules/metabolism , Extracellular Matrix Proteins/metabolism , Protein Interaction Domains and Motifs/physiology , Amino Acid Sequence , Cell-Free System/metabolism , Cells, Cultured , Epidermis/metabolism , Extracellular Matrix Proteins/genetics , Fibroblasts/metabolism , Humans , Immunoprecipitation , Keratinocytes/metabolism , Molecular Sequence Data , Protein Binding/physiology , Recombinant Proteins/metabolism , Sequence Homology, Amino Acid , Serum Albumin/genetics , Skin/metabolism , Two-Hybrid System Techniques , Vitamin D-Binding Protein/genetics , Kalinin
8.
J Med Chem ; 47(10): 2411-3, 2004 May 06.
Article in English | MEDLINE | ID: mdl-15115382

ABSTRACT

In this letter we report the synthesis and biochemical evaluation of selective, irreversible diphenyl phosphonate inhibitors for urokinase plasminogen activator (uPA). A diphenyl phosphonate group was introduced on the substratelike peptide Z-d-Ser-Ala-Arg, and modification of the guanidine side chain was investigated. A guanylated benzyl group appeared the most promising side chain modification. A k(app) value in the 10(3) M(-1) s(-1) range for uPA was obtained, together with a selectivity index higher than 240 toward other trypsin-like proteases such as tPA, thrombin, plasmin, and FXa.


Subject(s)
Benzene Derivatives/chemical synthesis , Organophosphonates/chemical synthesis , Urokinase-Type Plasminogen Activator/antagonists & inhibitors , Benzene Derivatives/chemistry , Organophosphonates/chemistry , Structure-Activity Relationship , Urokinase-Type Plasminogen Activator/chemistry
9.
Blood ; 98(13): 3554-61, 2001 Dec 15.
Article in English | MEDLINE | ID: mdl-11739156

ABSTRACT

The interferon (IFN)-inducible chemokines, specifically, IFN-gamma-inducible protein-10 (IP-10), monokine induced by IFN-gamma (Mig), and IFN-inducible T-cell alpha-chemoattractant (I-TAC), share a unique CXC chemokine receptor (CXCR3). Recently, the highly specific membrane-bound protease and lymphocyte surface marker CD26/dipeptidyl peptidase IV (DPP IV) was found to be responsible for posttranslational processing of chemokines. Removal of NH(2)-terminal dipeptides by CD26/DPP IV alters chemokine receptor binding and signaling, and hence inflammatory and anti-human immunodeficiency virus (HIV) activities. CD26/DPP IV and CXCR3 are both markers for Th1 lymphocytes and, moreover, CD26/DPP IV is present in a soluble, active form in human plasma. This study reports that at physiologic enzyme concentrations CD26/DPP IV cleaved 50% of I-TAC within 2 minutes, whereas for IP-10 and Mig the kinetics were 3- and 10-fold slower, respectively. Processing of IP-10 and I-TAC by CD26/DPP IV resulted in reduced CXCR3-binding properties, loss of calcium-signaling capacity through CXCR3, and more than 10-fold reduced chemotactic potency. Moreover, IP-10 and I-TAC cleaved by CD26/DPP IV acted as chemotaxis antagonists and CD26/DPP IV-truncated IP-10 and Mig retained their ability to inhibit the angiogenic activity of interleukin-8 in the rabbit cornea micropocket model. These data demonstrate a negative feedback regulation by CD26/DPP IV in CXCR3-mediated chemotaxis without affecting the angiostatic potential of the CXCR3 ligands IP-10 and Mig.


Subject(s)
Angiogenesis Inhibitors , Chemokines, CXC/chemistry , Chemotaxis, Leukocyte/drug effects , Intercellular Signaling Peptides and Proteins , Lymphocytes/physiology , Receptors, Chemokine/agonists , Signal Transduction/drug effects , Angiogenesis Inhibitors/chemistry , Angiogenesis Inhibitors/pharmacology , Calcium/metabolism , Chemokine CXCL10 , Chemokine CXCL11 , Chemokine CXCL9 , Chemokines, CXC/metabolism , Chemokines, CXC/pharmacology , Dipeptidyl Peptidase 4/metabolism , Receptors, CXCR3 , Receptors, Chemokine/physiology , Structure-Activity Relationship
10.
FEBS Lett ; 507(3): 327-30, 2001 Nov 02.
Article in English | MEDLINE | ID: mdl-11696365

ABSTRACT

Dipeptidyl-peptidase IV (DPPIV/CD26) metabolizes neuropeptides regulating insulin secretion. We studied the in vitro steady-state kinetics of DPPIV/CD26-mediated truncation of vasoactive intestinal peptide (VIP), pituitary adenylyl cyclase-activating peptide (PACAP27 and PACAP38), gastrin-releasing peptide (GRP) and neuropeptide Y (NPY). DPPIV/CD26 sequentially cleaves off two dipeptides of VIP, PACAP27, PACAP38 and GRP. GRP situates between the best DPPIV/CD26 substrates reported, comparable to NPY. Surprisingly, the C-terminal extension of PACAP38, distant from the scissile bond, improves both PACAP38 binding and turnover. Therefore, residues remote from the scissile bond can modulate DPPIV/CD26 substrate selectivity as well as residues flanking it.


Subject(s)
Dipeptidyl Peptidase 4/metabolism , Neuropeptides/metabolism , Gastrin-Releasing Peptide/metabolism , Humans , Insulin/metabolism , Insulin Secretion , Kinetics , Mass Spectrometry , Neuropeptide Y/metabolism , Pancreas/metabolism , Pituitary Adenylate Cyclase-Activating Polypeptide , Substrate Specificity , Vasoactive Intestinal Peptide/metabolism
11.
Eur J Biochem ; 268(19): 5189-96, 2001 Oct.
Article in English | MEDLINE | ID: mdl-11589711

ABSTRACT

The crystal structure of leishmania triosephosphate isomerase (TIM) complexed with 2-(N-formyl-N-hydroxy)-aminoethyl phosphonate (IPP) highlights the importance of Asn11 for binding and catalysis. IPP is an analogue of the substrate D-glyceraldehyde-3-phosphate, and it is observed to bind with its aldehyde oxygen in an oxyanion hole formed by ND2 of Asn11 and NE2 of His95. Comparison of the mode of binding of IPP and the transition state analogue phosphoglycolohydroxamate (PGH) suggests that the Glu167 side chain, as well as the triose part of the substrate, adopt different conformations as the catalysed reaction proceeds. Comparison of the TIM-IPP and the TIM-PGH structures with other liganded and unliganded structures also highlights the conformational flexibility of the ligand and the active site, as well as the conserved mode of ligand binding.


Subject(s)
Aminoethylphosphonic Acid/metabolism , Organophosphonates , Triose-Phosphate Isomerase/metabolism , Aminoethylphosphonic Acid/analogs & derivatives , Animals , Asparagine/metabolism , Catalysis , Crystallography, X-Ray , Enzyme Inhibitors/pharmacology , Leishmania/enzymology , Ligands , Models, Molecular , Protein Conformation , Substrate Specificity , Triose-Phosphate Isomerase/antagonists & inhibitors , Triose-Phosphate Isomerase/chemistry , Triose-Phosphate Isomerase/isolation & purification
12.
J Biol Chem ; 276(32): 29839-45, 2001 Aug 10.
Article in English | MEDLINE | ID: mdl-11390394

ABSTRACT

Chemokines coordinate many aspects of leukocyte migration. As chemoattractants they play an important role in the innate and acquired immune response. There is good experimental evidence that N-terminal truncation by secreted or cell surface proteases is a way of modulating chemokine action. The localization of CD26/dipeptidyl peptidase IV on cell surfaces and in biological fluids, its primary specificity, and the type of naturally occurring truncated chemokines are consistent with such a function. We determined the steady-state catalytic parameters for a relevant selection of chemokines (CCL3b, CCL5, CCL11, CCL22, CXCL9, CXCL10, CXCL11, and CXCL12) previously reported to alter their chemotactic behavior due to CD26/dipeptidyl peptidase IV-catalyzed truncation. The results reveal a striking selectivity for stromal cell-derived factor-1alpha (CXCL12) and macrophage-derived chemokine (CCL22). The kinetic parameters support the hypothesis that CD26/dipeptidyl peptidase IV contributes to the degradation of certain chemokines in vivo. The data not only provide insight into the selectivity of the enzyme for specific chemokines, but they also contribute to the general understanding of CD26/dipeptidyl peptidase IV secondary substrate specificity.


Subject(s)
Chemokines/metabolism , Dipeptidyl Peptidase 4/biosynthesis , Amino Acid Sequence , Catalysis , Chemokine CCL8 , Chemokine CXCL11 , Chemokine CXCL12 , Chemokines/chemistry , Chemokines, CXC/biosynthesis , Chemokines, CXC/metabolism , Dipeptidyl Peptidase 4/chemistry , Gas Chromatography-Mass Spectrometry , Humans , Kinetics , Mass Spectrometry , Molecular Sequence Data , Monocyte Chemoattractant Proteins/metabolism , Protein Binding , Receptors, CCR4 , Receptors, CXCR3 , Receptors, CXCR4/metabolism , Receptors, Chemokine/metabolism , Substrate Specificity , Time Factors
13.
Proteins ; 42(3): 383-9, 2001 Feb 15.
Article in English | MEDLINE | ID: mdl-11151009

ABSTRACT

Loop 8 (residues 232-242) in triosephosphate isomerase (TIM) is a highly conserved loop that forms a tight binding pocket for the phosphate moiety of the substrate. Its sequence includes the fully conserved, solvent-exposed Leu238. The tight phosphate-binding pocket explains the high substrate specificity of TIM being limited to the in vivo substrates dihydroxyacetone-phosphate and D-glyceraldehyde-3-phosphate. Here we use the monomeric variant of trypanosomal TIM for exploring the structural consequences of shortening this loop. The mutagenesis, guided by extensive modeling calculations and followed up by crystallographic characterization, is aimed at widening the phosphate-binding pocket and, consequently, changing the substrate specificity. Two new variants were characterized. The crystal structures of these variants indicate that in monomeric forms of TIM, the Leu238 side-chain is nicely buried in a hydrophobic cluster. Monomeric forms of wild-type dimeric TIM are known to exist transiently as folding intermediates; our structural analysis suggests that in this monomeric form, Leu238 of loop 8 also adopts this completely buried conformation, which explains its full conservation across the evolution. The much wider phosphate-binding pocket of the new variant allows for the development of a new TIM variant with a different substrate specificity.


Subject(s)
Triose-Phosphate Isomerase/chemistry , Amino Acid Sequence , Binding Sites , Catalytic Domain , Conserved Sequence , Crystallization , Models, Molecular , Molecular Sequence Data , Mutagenesis , Phosphates/metabolism , Protein Conformation , Protein Engineering , Protein Folding , Sequence Homology, Amino Acid , Substrate Specificity , Triose-Phosphate Isomerase/genetics , Triose-Phosphate Isomerase/metabolism
14.
Eur J Biochem ; 267(17): 5608-13, 2000 Sep.
Article in English | MEDLINE | ID: mdl-10951221

ABSTRACT

Dipeptidyl peptidase IV (DPPIV, EC 3.4.14.5) is a serine type protease with an important modulatory activity on a number of chemokines, neuropeptides and peptide hormones. It is also known as CD26 or adenosine deaminase (ADA; EC 3.5.4.4) binding protein. DPPIV has been demonstrated on the plasmamembranes of T cells and activated natural killer or B cells as well as on a number of endothelial and differentiated epithelial cells. A soluble form of CD26/DPPIV has been described in serum. Over the past few years, several related enzymes with similar dipeptidyl peptidase activity have been discovered, raising questions on the molecular origin(s) of serum dipeptidyl peptidase activity. Among them attractin, the human orthologue of the mouse mahogany protein, was postulated to be responsible for the majority of the DPPIV-like activity in serum. Using ADA-affinity chromatography, it is shown here that 95% of the serum dipeptidyl peptidase activity is associated with a protein with ADA-binding properties. The natural protein was purified in milligram quantities, allowing molecular characterization (N-terminal sequence, glycosylation type, CD-spectrum, pH and thermal stability) and comparison with CD26/DPPIV from other sources. The purified serum enzyme was confirmed as CD26.


Subject(s)
Dipeptides/metabolism , Dipeptidyl Peptidase 4/blood , Amino Acid Sequence , Chromatography, Affinity , Chromatography, Gel , Circular Dichroism , Dipeptides/chemistry , Dipeptidyl Peptidase 4/chemistry , Dipeptidyl Peptidase 4/isolation & purification , Electrophoresis, Polyacrylamide Gel , Humans , Molecular Sequence Data , Proline/chemistry , Recombinant Proteins/blood , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Semen/enzymology
15.
Eur J Biochem ; 267(9): 2516-24, 2000 May.
Article in English | MEDLINE | ID: mdl-10785370

ABSTRACT

The amino acid sequence of Leishmania mexicana triose phosphate isomerase is unique in having at position 65 a glutamic acid instead of a glutamine. The stability properties of LmTIM and the E65Q mutant were investigated by pH and guanidinium chloride-induced unfolding. The crystal structure of E65Q was determined. Three important observations were made: (a) there are no structural rearrangements as the result of the substitution; (b) the mutant is more stable than the wild-type; and (c) the stability of the wild-type enzyme shows strong pH dependence, which can be attributed to the ionization of Glu65. Burying of the Glu65 side chain in the uncharged environment of the dimer interface results in a shift in pKa of more than 3 units. The pH-dependent decrease in overall stability is due to weakening of the monomer-monomer interactions (in the dimer). The E65Q substitution causes an increase in stability as the result of the formation of an additional hydrogen bond in each subunit (DeltaDeltaG degrees of 2 kcal.mol-1 per monomer) and the elimination of a charged group in the dimer interface (DeltaDeltaG degrees of at least 9 kcal.mol-1 per dimer). The computated shift in pKa and the stability of the dimer calculated from the charge distribution in the protein structure agree closely with the experimental results. The guanidinium chloride dependence of the unfolding constant was smaller than expected from studies involving monomeric model proteins. No intermediates could be identified in the unfolding equilibrium by combining fluorescence and CD measurements. Study of a stable monomeric triose phosphate isomerase variant confirmed that the phenomenon persists in the monomer.


Subject(s)
Glutamic Acid/metabolism , Leishmania mexicana/enzymology , Triose-Phosphate Isomerase/metabolism , Animals , Crystallography, X-Ray , Dimerization , Enzyme Stability , Glutamic Acid/chemistry , Guanidine/chemistry , Hydrogen-Ion Concentration , Ions , Mutagenesis, Site-Directed , Protein Denaturation , Thermodynamics , Triose-Phosphate Isomerase/chemistry , Triose-Phosphate Isomerase/genetics
16.
J Mass Spectrom ; 34(4): 255-63, 1999 Apr.
Article in English | MEDLINE | ID: mdl-10226356

ABSTRACT

The interaction of dipeptidyl peptidase IV with structurally related proteins differing in chain length, namely vasostatin I and II and their precursor protein chromogranin A, was examined using high-performance liquid chromatography in combination with electrospray mass spectrometry. Suitable analytical procedures were developed involving the use of reversed-phase high-performance liquid chromatography for purification of the enzymatic degradation products and a peptide mapping procedure for evaluating the enzymatic degradation of the large precursor protein chromogranin A. While vasostatin I was found to be a substrate for dipeptidyl peptidase IV, no N-terminal cleavage of Leu-Pro could be noted for chromogranin A. With respect to vasostatin II, N-terminal degradation was only observed after degradation in the C-terminal domain to proteins containing < or = 78 amino acids. The specificity of the N-terminal release of Leu-Pro was proved by addition of a DPP IV specific inhibitor.


Subject(s)
Chromogranins/chemistry , Dipeptidyl Peptidase 4/chemistry , Peptide Fragments/chemistry , Amino Acid Sequence , Animals , Catalysis , Cattle , Chromatography, High Pressure Liquid , Chromogranin A , Mass Spectrometry , Molecular Sequence Data
17.
Protein Eng ; 12(3): 243-50, 1999 Mar.
Article in English | MEDLINE | ID: mdl-10235625

ABSTRACT

The dimeric enzyme triosephosphate isomerase (TIM) has a very tight and rigid dimer interface. At this interface a critical hydrogen bond is formed between the main chain oxygen atom of the catalytic residue Lys13 and the completely buried side chain of Gln65 (of the same subunit). The sequence of Leishmania mexicana TIM, closely related to Trypanosoma brucei TIM (68% sequence identity), shows that this highly conserved glutamine has been replaced by a glutamate. Therefore, the 1.8 A crystal structure of leishmania TIM (at pH 5.9) was determined. The comparison with the structure of trypanosomal TIM shows no rearrangements in the vicinity of Glu65, suggesting that its side chain is protonated and is hydrogen bonded to the main chain oxygen of Lys13. Ionization of this glutamic acid side chain causes a pH-dependent decrease in the thermal stability of leishmania TIM. The presence of this glutamate, also in its protonated state, disrupts to some extent the conserved hydrogen bond network, as seen in all other TIMs. Restoration of the hydrogen bonding network by its mutation to glutamine in the E65Q variant of leishmania TIM results in much higher stability; for example, at pH 7, the apparent melting temperature increases by 26 degrees C (57 degrees C for leishmania TIM to 83 degrees C for the E65Q variant). This mutation does not affect the kinetic properties, showing that even point mutations can convert a mesophilic enzyme into a superstable enzyme without losing catalytic power at the mesophilic temperature.


Subject(s)
Leishmania mexicana/enzymology , Triose-Phosphate Isomerase/chemistry , Animals , Base Sequence , Catalysis , Crystallography, X-Ray , DNA Primers , Enzyme Stability , Escherichia coli/genetics , Models, Molecular , Molecular Sequence Data , Mutagenesis, Site-Directed , Protein Conformation , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Triose-Phosphate Isomerase/genetics , Triose-Phosphate Isomerase/metabolism
18.
Curr Med Chem ; 6(4): 311-27, 1999 Apr.
Article in English | MEDLINE | ID: mdl-10101215

ABSTRACT

This review deals with the properties and functions of dipeptidyl peptidase IV (DPP IV, EC 3.4.14.5). This membrane anchored ecto-protease has been identified as the leukocyte antigen CD26. The following aspects of DPP IV/CD26 will be discussed : the structure of DPP IV and the new family of serine proteases to which it belongs, the substrate specificity, the distribution in the human body, specific DPP IV inhibitors and the role of CD26 in the intestinal and renal handling of proline containing peptides, in cell adhesion, in peptide metabolism, in the immune system and in HIV infection. Especially the latest developments in the search for new inhibitors will be reported as well as the discovery of new natural substrates for DPP IV such as the glucagon-like peptides and the chemokines. Finally the therapeutical perspectives for DPP IV inhibitors will be discussed.


Subject(s)
Dipeptidyl Peptidase 4/drug effects , Dipeptidyl Peptidase 4/physiology , Enzyme Inhibitors/pharmacology , Animals , Cell Adhesion , Cytokines/metabolism , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/therapeutic use , HIV Infections/enzymology , Humans , Immune System/metabolism , Intestinal Mucosa/metabolism , Kidney/metabolism , Neuropeptides/metabolism , Peptides/metabolism , Proline/metabolism , Substrate Specificity
19.
J Med Chem ; 42(6): 1041-52, 1999 Mar 25.
Article in English | MEDLINE | ID: mdl-10090787

ABSTRACT

The previously reported diphenyl 1-(S)-prolylpyrrolidine-2(R, S)-phosphonate (5) was used as a lead compound for the development of potent and irreversible inhibitors of dipeptidyl peptidase IV (DPP IV, EC 3.4.14.5). The synthesis of a series of diaryl 1-(S)-prolylpyrrolidine-2(R,S)-phosphonates with different substituents on the aryl rings (hydroxyl, methoxy, acylamino, sulfonylamino, ureyl, methoxycarbonyl, and alkylaminocarbonyl) started from the corresponding phosphites. A good correlation was found between the electronic properties of the substituent and the inhibitory activity and stability. The most striking divergence of this correlation was the high potency combined with a high stability of the 4-acetylamino-substituted derivative 11e. This compound shows low cytotoxicity in human peripheral blood mononuclear cells and also has favorable properties in vivo. Therefore bis(4-acetamidophenyl) 1-(S)-prolylpyrrolidine-2(R,S)-phosphonate (11e) is considered as a major improvement and will be a highly valuable DPP IV inhibitor for further studies on the biological function of the enzyme and the therapeutic value of its inhibition.


Subject(s)
Dipeptidyl-Peptidases and Tripeptidyl-Peptidases/antagonists & inhibitors , Enzyme Inhibitors/chemistry , Organophosphonates/chemistry , Proline/analogs & derivatives , Animals , Dipeptidyl-Peptidases and Tripeptidyl-Peptidases/blood , Drug Stability , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/metabolism , Enzyme Inhibitors/pharmacology , Humans , In Vitro Techniques , Kinetics , Leukocytes, Mononuclear/drug effects , Leukocytes, Mononuclear/enzymology , Male , Mice , Organophosphonates/chemical synthesis , Organophosphonates/metabolism , Organophosphonates/pharmacology , Proline/chemical synthesis , Proline/chemistry , Proline/metabolism , Proline/pharmacology , Rabbits , Rats , Rats, Wistar , Structure-Activity Relationship
20.
J Biol Chem ; 274(7): 3988-93, 1999 Feb 12.
Article in English | MEDLINE | ID: mdl-9933589

ABSTRACT

The serine protease CD26/dipeptidyl-peptidase IV (CD26/DPP IV) and chemokines are known key players in immunological processes. Surprisingly, CD26/DPP IV not only removed the expected Gly1-Pro2 dipeptide from the NH2 terminus of macrophage-derived chemokine (MDC) but subsequently also the Tyr3-Gly4 dipeptide, generating MDC(5-69). This second cleavage after a Gly residue demonstrated that the substrate specificity of this protease is less restricted than anticipated. The unusual processing of MDC by CD26/DPP IV was confirmed on the synthetic peptides GPYGANMED (MDC(1-9)) and YGANMED (MDC(3-9)). Compared with intact MDC(1-69), CD26/DPP IV-processed MDC(5-69) had reduced chemotactic activity on lymphocytes and monocyte-derived dendritic cells, showed impaired mobilization of intracellular Ca2+ through CC chemokine receptor 4 (CCR4), and was unable to desensitize for MDC-induced Ca2+-responses in CCR4 transfectants. However, MDC(5-69) remained equally chemotactic as intact MDC(1-69) on monocytes. In contrast to the reduced binding to lymphocytes and CCR4 transfectants, MDC(5-69) retained its binding properties to monocytes and its anti-HIV-1 activity. Thus, NH2-terminal truncation of MDC by CD26/DPP IV has profound biological consequences and may be an important regulatory mechanism during the migration of Th2 lymphocytes and dendritic cells to germinal centers and to sites of inflammation.


Subject(s)
Chemokines, CC/metabolism , Chemotaxis, Leukocyte , Dipeptidyl Peptidase 4/metabolism , Receptors, Chemokine/metabolism , T-Lymphocytes/metabolism , Binding, Competitive , Calcium/metabolism , Chemokine CCL22 , Dendritic Cells/metabolism , Dipeptides/metabolism , HIV-1/drug effects , HIV-1/pathogenicity , Humans , Monocytes/metabolism , Monocytes/virology , Receptors, CCR4 , Recombinant Proteins/metabolism
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