Undergraduate Research in the Time of COVID-19: A Remote Imaging Protocol for Physically Distanced Students Studying Wildlife.

The COVID-19 pandemic has shuttered many university research labs because campuses are closed, and faculty and students lack productive ways of working remotely. This presents major difficulties for students who need research opportunities to fulfill their intellectual growth potential and their undergraduate research and thesis requirements. Without research experiences, undergraduates may be less competitive for future jobs and graduate programs. Similarly, faculty need research avenues to advance their academic careers while maintaining physically distant protocols. We outline here a budget-friendly, COVID-friendly, adaptable protocol that aims to introduce students to the wildlife research opportunities surrounding their campus or home through observation and literature research. Student researchers learn the scientific method by getting first-hand experience with an original research project. The pedagogical goals include designing a study: defining a question or proposing a hypothesis, collecting, organizing, and analyzing data, and sharing results in the form of posters, theses, informal educational materials, and scientific publications. This protocol is flexible to allow for different budgets, opportunities, and constraints. The researchers monitor different locations using trail cameras to determine which species are present around campus or even students' homes. During the COVID-19 pandemic, when it is likely there will be few in-person meetings, this protocol offers students the opportunity to carry out research with limited or no in-person meetings, and it can be run remotely by sharing the data collected. In this paper, we provide instructions, details, and student handouts for instructors to help implement this research project.

Embryonic yolk removal affects neither morphology nor escape performance of larval axolotls.

Maternal effects, the influences of maternal phenotype on the phenotypes of her offspring, mediate early ontogenetic traits through maternal investment. In amphibians, provisioning eggs with yolk is the main source of maternal investment. While larger eggs generally result in larger, higher-quality offspring, the relationship between egg size and offspring phenotype is complicated because offspring can evolve to be more or less responsive to variation in yolk provisions. Previous studies of several ambystomatid salamanders suggest that the effects of embryonic yolk reserve reduction on hatchling life history traits increase with egg size. In this study, a similar controlled experimental yolk removal technique in Ambystoma mexicanum was used to determine the effects of reduced yolk reserves on phenotypes including hatching time and stage, hatchling and larval size and performance in predation trials with fish. Surprisingly, yolk reduction revealed no effects on any traits. These findings suggest that larval morphology in A. mexicanum is highly canalized and larval phenotypes are decoupled from yolk reserve variation. This surprising lack of yolk removal effects in hatchling and larval axolotls illustrates the evolutionary flexibility of early life history traits. Traits can evolve to increase or decrease their response to resources and can even become completely unresponsive. Since we found no effects in early life history, we hypothesize that domestication of the axolotl may have altered yolk properties or allocation dynamics and that maternal investment in yolk reserves may manifest at later life stages by reducing the time to reproductive maturity or increasing fecundity.

Maternal investment mediates offspring life history variation with context-dependent fitness consequences.

Maternal effects, such as per capita maternal investment, often interact with environmental conditions to strongly affect traits expressed early in ontogeny. However, their impact on adult life history traits and fitness components is relatively unknown. Theory predicts that lower per capita maternal investment will have strong fitness costs when the offspring develop in unfavorable conditions, yet few studies have experimentally manipulated per capita maternal investment and followed offspring through adulthood. We used a surgical embryonic yolk removal technique to investigate how per capita maternal investment interacted with an important ecological factor, larval density, to mediate offspring life history traits through reproductive maturity in an amphibian, Ambystoma talpoideum. We predicted that increased larval density would reinforce the life history variation induced by differences in per capita investment (i.e., Controls vs. Reduced Yolk), with Reduced larvae ultimately expressing traits associated with lower fitness than Controls when raised at high densities. We found that Reduced individuals were initially smaller and more developed, caught up in size to Controls within the first month of the larval stage, but were smaller at the end of the larval stage in low densities. Reduced individuals also were more likely to undergo metamorphosis at high densities and mature 'females invested in more eggs for their body sizes than Controls. Together, our results do not support our hypothesis, but instead indicate that Reduced individuals express traits associated with higher fitness when they develop in high-density environments, but lower fitness in low-density environments. The observed life history and fitness patterns are consistent with the "maternal match" hypothesis, which predicts that when the maternal environment (e.g., high density) results in phenotypic variation that is transmitted to the offspring (e.g., reduced per capita yolk investment), and offspring face that same environment (e.g., high larval density), the fitness of both mother and offspring is maximized.

Putting µ/g in a new light: plasticity in life history switch points reflects fine-scale adaptive responses.

Life history theory predicts that organisms with complex life cycles should transition between life stages when the ratio of growth rate (g) to risk of mortality (µ) in the current stage falls below that in the subsequent stage. Empirical support for this idea has been mixed. Implicit in both theory and empirical work is that the risk of mortality in the subsequent stage is unknown. However, some embryos and larvae of both vertebrates and invertebrates assess cues of post-transition predation risk and alter the timing of hatching or metamorphosis accordingly. Furthermore, although life history switch points of prey have traditionally been treated as discrete shifts in morphology or habitat, for many organisms they are continuous transitional periods within which the timing of specific developmental and behavioral events can be plastic. We studied red-eyed treefrogs (Agalychnis callidryas), which detect predators of both larvae and metamorphs, to test if plastic changes during the process of metamorphosis could reconcile the mismatch between life history theory and empirical data and if plasticity in an earlier stage transition (hatching) would affect plasticity at a subsequent stage transition (metamorphosis). We reared tadpoles from hatching until metamorphosis in a full-factorial cross of two hatching ages (early- vs. late-hatched) and the presence or absence of free-roaming predators of larvae (giant water bugs) and metamorphs (fishing spiders). Hatching age affected the times from oviposition to tail resorption and from hatching to emergence onto land, but did not alter responses to predators or developmental stage at emergence. Tadpoles did not alter their age at emergence or tail resorption in response to larval or metamorph predators, despite the fact that predators reduced tadpole density by ~30%. However, developmental stage at emergence and time needed to complete metamorphosis in the terrestrial environment were plastic and consistent with predictions of the "minimize µ/g" framework. Our results demonstrate that likely adaptive changes in life history transitions occur at previously unappreciated timescales. Consideration of plasticity in the developmental timing of ecologically important events within metamorphosis, rather than treating it as a discrete switch point, may help to reconcile inconsistencies between empirical studies of predator effects and expectations of long-standing ecological theory.

Embryonic yolk removal affects a suite of larval salamander life history traits.

Egg size is a key life history trait affecting fitness, and it varies abundantly. The value of egg size to a mother and her offspring is often determined by a trade-off between investing more yolk in a few large eggs or less yolk into many more, smaller eggs. Smaller eggs are generally expected to be phenotypically inferior or females could increase their fitness by making more smaller eggs. However, many females produce a mix of egg sizes and natural yolk variation induces normal developmental responses which may persist into subsequent stages of a complex life history. Since sources of phenotypic variation are easily confounded, I surgically removed yolk from embryonic spotted salamanders (Ambystoma maculatum) using a sham surgery as a control and a split-clutch design to isolate the effects of yolk reserve variation from genetic sources of variation. Yolk removal induced early hatching, reduced developmental stage and hatchling body size. Small hatchlings stayed relatively small through the early larval period, but 17 weeks later the correlation with early larval body size was lost. When the experiment ended, larger individuals were further along in metamorphic development but mortality was independent of early larval body size. Variation in spotted salamander yolk reserves affects a suite of hatchling life history traits that persists into the larval period. Outside the laboratory, egg size effects may cascade throughout complex amphibian life histories. Applied experimentally and comparatively, this simple yolk removal technique may help identify how traits increase or decrease their response to maternal yolk investment.

Evolution of maternal egg size effects in sister salamander species.

Egg size varies genetically and with the maternal environment. It is correlated with and can act as a resource fueling variation in many other key life history traits. This study examined hypotheses about how plastic responses of offspring to yolk variation evolve (and contribute to phenotypic evolution) when maternal investment in egg size evolves. I used a split-clutch, controlled, surgical experiment with a longitudinal (repeated-measures) design to examine the effects of yolk removal on sister salamander species with distinct egg and larval phenotypes. Yolk removal had large effects in the derived larger-egged species, A. barbouri, and greatly reduced effects in A. texanum. Early hatching and smaller larval body size was only found in A. barbouri and survival rates decreased more in A. barbouri. These results provide strong experimental evidence that as female salamanders evolve greater yolk investment in each egg, offspring coevolve an increased magnitude of phenotypic plasticity in response to yolk variation across a suite of life history traits. Yolk therefore acts as an integrator of phenotypes that allows females to modify modules of life history traits together (facilitating adaptation). When organisms invade new environments, complex integrated phenotypes may evolve via correlated responses to increased maternal investment, yet individual traits can be coupled or decoupled to yolk quantity variation in different species.

The evolution of locomotor rhythmicity in tetrapods.

Differences in rhythmicity (relative variance in cycle period) among mammal, fish, and lizard feeding systems have been hypothesized to be associated with differences in their sensorimotor control systems. We tested this hypothesis by examining whether the locomotion of tachymetabolic tetrapods (birds and mammals) is more rhythmic than that of bradymetabolic tetrapods (lizards, alligators, turtles, salamanders). Species averages of intraindividual coefficients of variation in cycle period were compared while controlling for gait and substrate. Variance in locomotor cycle periods is significantly lower in tachymetabolic than in bradymetabolic animals for datasets that include treadmill locomotion, non-treadmill locomotion, or both. When phylogenetic relationships are taken into account the pooled analyses remain significant, whereas the non-treadmill and the treadmill analyses become nonsignificant. The co-occurrence of relatively high rhythmicity in both feeding and locomotor systems of tachymetabolic tetrapods suggests that the anatomical substrate of rhythmicity is in the motor control system, not in the musculoskeletal components.

Prey responses to predator chemical cues: disentangling the importance of the number and biomass of prey consumed.

To effectively balance investment in predator defenses versus other traits, organisms must accurately assess predation risk. Chemical cues caused by predation events are indicators of risk for prey in a wide variety of systems, but the relationship between how prey perceive risk in relation to the amount of prey consumed by predators is poorly understood. While per capita predation rate is often used as the metric of relative risk, studies aimed at quantifying predator-induced defenses commonly control biomass of prey consumed as the metric of risk. However, biomass consumed can change by altering either the number or size of prey consumed. In this study we determine whether phenotypic plasticity to predator chemical cues depends upon prey biomass consumed, prey number consumed, or both. We examine the growth response of red-eyed treefrog tadpoles (Agalychnis callidryas) to cues from a larval dragonfly (Anax amazili). Biomass consumed was manipulated by either increasing the number of prey while holding individual prey size constant, or by holding the number of prey constant and varying individual prey size. We address two questions. (i) Do prey reduce growth rate in response to chemical cues in a dose dependent manner? (ii) Does the magnitude of the response depend on whether prey consumption increases via number or size of prey? We find that the phenotypic response of prey is an asymptotic function of prey biomass consumed. However, the asymptotic response is higher when more prey are consumed. Our findings have important implications for evaluating past studies and how future experiments should be designed. A stronger response to predation cues generated by more individual prey deaths is consistent with models that predict prey sensitivity to per capita risk, providing a more direct link between empirical and theoretical studies which are often focused on changes in population sizes not individual biomass.

Lung ventilation during treadmill locomotion in a semi-aquatic turtle, Trachemys scripta.

It is reasonable to presume that locomotion should have a mechanical effect on breathing in turtles. The turtle shell is rigid, and when the limbs protract and retract, air in the lungs should be displaced. This expectation was met in a previous study of the green sea turtle, Chelonia mydas; breathing completely ceased during terrestrial locomotion (Jackson and Prange, 1979. J Comp Physiol 134:315-319). In contrast, another study found no direct effect of locomotion on ventilation in the terrestrial box turtle, Terrapene carolina (Landberg et al., 2003. J Exp Biol 206:3391-3404). In this study we measured lung ventilation during treadmill locomotion in a semi-aquatic turtle, the red-eared slider, Trachemys scripta. Sliders breathed almost continuously during locomotion and during brief pauses between locomotor bouts. Tidal volume was relatively small (approximately 1 mL) during locomotion and approximately doubled during pauses. Minute ventilation was, however, not significantly smaller during locomotion because breath frequency was higher than that during the pauses. We found no consistent evidence for phase coupling between breathing and locomotion indicating that sliders do not use locomotor movements to drive breathing. We also found no evidence for a buccal-pump mechanism. Sliders, like box turtles, appear to use abdominal musculature to breathe during locomotion. Thus, locomotion affects lung ventilation differently in the three turtle species studied to date: the terrestrial Te. carolina shows no measurable effect of locomotion on ventilation; the semi-aquatic Tr. scripta breathes with smaller tidal volumes during locomotion; and the highly aquatic C. mydas stops breathing completely during terrestrial locomotion.

Vertebral function during tadpole locomotion.

Most anuran larvae show large lateral oscillations at both the tip of the tail and the snout while swimming in a straight line. Although the lateral deflections at the snout have long been considered an inefficient aspect of tadpole locomotion, a recent hydrodynamic model suggests that they may in fact help generate thrust. It is not clear though exactly where this bending takes place. The vertebral column is extremely short and seemingly inflexible in anurans, and any axial flexion that might occur there is hidden within the globose body of the tadpole. Here we test the hypothesis that lateral deflections of the snout correlate with bending of the vertebral column within the torso of tadpoles. To quantify vertebral curvature, three sonomicrometry crystals were surgically implanted along the dorsal midline in locations corresponding to the anterior, middle, and posterior region of the presacral vertebral column. Swimming trials were conducted in a flume where synchronized video recordings were collected in dorsal view. Our results confirm that cyclic lateral bending occurs along the vertebral column during swimming and indicate that vertebral curvature is temporally in phase with lateral oscillation of the snout. Lateral oscillation of the snout increased significantly with increasing vertebral curvature. Similarly, tail beat amplitude also increases significantly with increasing vertebral curvature. Our results suggest that cyclic lateral flexion of the vertebral column, activated by the axial muscle within the torso of tadpoles contributes to snout oscillations and the generation of thrust during undulatory swimming in anuran larvae.

Lung ventilation during treadmill locomotion in a terrestrial turtle, Terrapene carolina.

The limb girdles and lungs of turtles are both located within the bony shell, and therefore limb movements during locomotion could affect breathing performance. A mechanical conflict between locomotion and lung ventilation has been reported in adult green sea turtles, Chelonia mydas, in which breathing stops during terrestrial locomotion and resumes during pauses between bouts of locomotion. We measured lung ventilation during treadmill locomotion using pneumotach masks in three individual Terrapene carolina (mass 304-416 g) and found no consistent mechanical effects of locomotion on breathing performance. Relatively small tidal volumes (2.2+/-1.4 ml breath(-1); mean +/- S.D., N=3 individuals) coupled with high breath frequencies (36.6+/-26.4 breaths min(-1); mean +/- S.D., N=3 individuals) during locomotion yield mass-specific minute volumes that are higher than any previously reported for turtles (264+/-64 ml min kg(-1); mean +/- S.D., N=3 individuals). Minute volume was higher during locomotion than during recovery from exercise (P<0.01; paired t-test), and tidal volumes measured during locomotion were not significantly different from values measured during brief pauses between locomotor bouts or during recovery from exercise (P>0.05; two-way ANOVA). Since locomotion does not appear to conflict with breathing performance, the mechanism of lung ventilation must be either independent of, or coupled to, the stride cycle. The timing of peak airflow from breaths occurring during locomotion does not show any fixed phase relationship with the stride cycle. Additionally, the peak values of inhalatory and exhalatory airflow rates do not differ consistently with respect to the stride cycle. Together, these data indicate that T. carolina is not using respiratory-locomotor coupling and limb and girdle movements do not contribute to lung ventilation during locomotion. X-ray video recordings indicate that lung ventilation is achieved via bilateral activity of the transverse (exhalatory) and oblique (inhalatory) abdominal muscles. This specialized abdominal ventilation mechanism may have originally circumvented a mechanical conflict between breathing and locomotion in the ancestor of turtles and subsequently allowed the ribs to abandon their role in lung ventilation and to fuse to form the shell.

Effects of metamorphosis on the aquatic escape response of the two-lined salamander (Eurycea bislineata).

Although numerous studies have described the escape kinematics of fishes, little is known about the aquatic escape responses of salamanders. We compare the escape kinematics of larval and adult Eurycea bislineata, the two-lined salamander, to examine the effects of metamorphosis on aquatic escape performance. We hypothesize that shape changes associated with resorption of the larval tail fin at metamorphosis will affect aquatic locomotor performance. Escape responses were recorded using high-speed video, and the effects of life stage and total length on escape kinematics were analyzed statistically using analysis of covariance. Our results show that both larval and adult E. bislineata use a two-stage escape response (similar to the C-starts of fishes) that consists of a preparatory (stage 1) and a propulsive (stage 2) stroke. The duration of both kinematic stages and the distance traveled during stage 2 increased with total length. Both larval and adult E. bislineata had final escape trajectories that were directed away from the stimulus. The main kinematic difference between larvae and adults is that adults exhibit significantly greater maximum curvature during stage 1. Total escape duration and the distance traveled during stage 2 did not differ significantly between larvae and adults. Despite the significantly lower tail aspect ratio of adults, we found no significant decrease in the overall escape performance of adult E. bislineata. Our results suggest that adults may compensate for the decrease in tail aspect ratio by increasing their maximum curvature. These findings do not support the hypothesis that larvae exhibit better locomotor performance than adults as a result of stronger selective pressures on early life stages.