Detecting Animal Contacts-A Deep Learning-Based Pig Detection and Tracking Approach for the Quantification of Social Contacts.

The identification of social interactions is of fundamental importance for animal behavioral studies, addressing numerous problems like investigating the influence of social hierarchical structures or the drivers of agonistic behavioral disorders. However, the majority of previous studies often rely on manual determination of the number and types of social encounters by direct observation which requires a large amount of personnel and economical efforts. To overcome this limitation and increase research efficiency and, thus, contribute to animal welfare in the long term, we propose in this study a framework for the automated identification of social contacts. In this framework, we apply a convolutional neural network (CNN) to detect the location and orientation of pigs within a video and track their movement trajectories over a period of time using a Kalman filter (KF) algorithm. Based on the tracking information, we automatically identify social contacts in the form of head-head and head-tail contacts. Moreover, by using the individual animal IDs, we construct a network of social contacts as the final output. We evaluated the performance of our framework based on two distinct test sets for pig detection and tracking. Consequently, we achieved a Sensitivity, Precision, and F1-score of 94.2%, 95.4%, and 95.1%, respectively, and a MOTA score of 94.4%. The findings of this study demonstrate the effectiveness of our keypoint-based tracking-by-detection strategy and can be applied to enhance animal monitoring systems.

Animal Welfare Consequences of Organic Boar Fattening and Occurrence of Boar Taint on Five Commercial Farms.

The welfare of male fattening pigs may be improved by refraining from castration, but may be compromised, in turn, by harmful social behaviour in groups of boars. In addition, boar taint may be problematic. This study aimed to evaluate these potential problems in boar fattening under commercial organic conditions. In total, 625 boars were compared with 433 barrows and 83 gilts regarding their social behaviour, lesions and lameness at 80 kg, before and after split marketing. The mixed-model analysis showed that significantly more short agonistic interactions, fights and mounting behaviours were observed in groups of boars. Agonistic interactions were reduced in spring/summer and when boars grew older. Fights and mounts were increased when boars had contact to female pigs in the neighbouring pen. No effect of split marketing, growth rate, homogeneity of groups, group size, feeding space and illumination hours could be detected. Increased interaction frequencies did not result in significantly more skin lesions, lameness, treatments or mortality. Increased space allowance reduced skin lesions. On 9.8% of the dissected boars' penises, wounds were detected; they were absent on two farms with generous litter provision. Boar taint prevalence, as detected by human nose method, was 1.44%. Under the studied organic husbandry conditions, boar fattening appears to be practicable, although penile injuries should be monitored at slaughter.

Effects of Different Housing Systems during Suckling and Rearing Period on Skin and Tail Lesions, Tail Losses and Performance of Growing and Finishing Pigs.

Feasible alternatives to stressful weaning and tail-docking are needed to inhibit tail biting. Therefore, we investigated the effects of housing systems for 1106 pigs that were weaned from: (1) conventional farrowing crates (FC), (2) free-farrowing pens (FF), or (3) group housing of lactating sows (GH) into (1) conventional rearing pens (Conv) or (2) piglets remained in their farrowing pens for rearing (Reaf). Tails were docked or left undocked batchwise. All pigs were regrouped for the fattening period. Pigs were scored for skin lesions, tail lesions and losses. After weaning, Conv-GH pigs had significantly less skin lesions than Conv-FC and Conv-FF pigs. After regrouping for fattening, Reaf-GH pigs had significantly less skin lesions than Conv pigs, Reaf-FC and Reaf-FF. The frequency of tail lesions of undocked Conv pigs peaked in week 4 (66.8%). Two weeks later, Reaf undocked pigs reached their maximum (36.2%). At the end of fattening, 99.3% of undocked Conv pigs and 43.1% of undocked Reaf pigs lost parts of their tail. In conclusion, the co-mingling of piglets during suckling reduced the incidence of skin lesions. Rearing in the farrowing pen significantly reduced the incidence of tail lesions and losses for undocked pigs. No housing system negatively affected the performance.

Classification of Pigs with Tail Lesions from Different Farrowing and Rearing Systems during Rearing and Fattening Period.

The aim of the present study was to classify and characterise pigs with tail lesions using a combined parameter based on the frequency and duration of tail lesions and to find out whether biologically relevant groups could be separated by cluster analysis. Pigs (n = 677, 50% docked, 50% undocked) from three farrowing systems, as follows: (1) Conventional farrowing crate (FC), (2) free farrowing (FF), and (3) a group housing lactating sows (GH), were divided into two rearing systems as follows: (1) A conventional system (CONV) and (2) a wean-to-finish (W-F) system. Within 18 assessment weeks, starting after weaning, animal tail lesions were recorded individually. The animals were characterised into five lesion groups, as follows: (I) No lesions to (V) many long lasting lesions. The separability of the predefined lesion groups was checked by an animal individual lesion parameter. By using a k-means cluster analysis, it was shown that the docking status was the mainly affected parameter on the tail lesions. The separation of the groups only succeeded for the most distinct groups, I and V. The high impact of the docking status and the reduction of tail lesions by more space allowance was shown. More characterising information for the individual pigs would improve the separability of the lesion groups.