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1.
Sci Rep ; 11(1): 12769, 2021 06 17.
Article in English | MEDLINE | ID: mdl-34140571

ABSTRACT

Reputed to be the driest desert in the world, the Atacama Desert in the Central Andes of Northern Chile is an extreme environment with high UV radiation, wide temperature variation, and minimum precipitation. Scarce lagoons associated with salt flats (salars) in this desert are the surface expression of shallow groundwater; these ponds serve as refugia for life and often host microbial communities associated with evaporitic mineral deposition. Results based on multidisciplinary field campaigns and associated laboratory examination of samples collected from the Puquios of the Salar de Llamara in the Atacama Desert during austral summer provide unprecedented detail regarding the spatial heterogeneity of physical, chemical, and biological characteristics of these salar environments. Four main lagoons ('Puquios') and more than 400 smaller ponds occur within an area less than 5 km2, and are characterized by high variability in electrical conductivity, benthic and planktonic biota, microbiota, lagoon bottom type, and style of mineral deposition. Results suggest that electrical conductivity is a driving force of system heterogeneity. Such spatial heterogeneity within the Puquios is likely to be expanded with temporal observations incorporating expected seasonal changes in electrical conductivity. The complexity of these Andean ecosystems may be key to their ability to persist in extreme environments at the edge of habitability.

2.
J Mater Sci ; 52(1): 285-304, 2017.
Article in English | MEDLINE | ID: mdl-27829689

ABSTRACT

Elastic and anelastic properties of ceramic samples of multiferroic perovskites with nominal compositions across the binary join PbZr0.53Ti0.47O3-PbFe0.5Ta0.5O3 (PZT-PFT) have been assembled to create a binary phase diagram and to address the role of strain relaxation associated with their phase transitions. Structural relationships are similar to those observed previously for PbZr0.53Ti0.47O3-PbFe0.5Nb0.5O3 (PZT-PFN), but the magnitude of the tetragonal shear strain associated with the ferroelectric order parameter appears to be much smaller. This leads to relaxor character for the development of ferroelectric properties in the end member PbFe0.5Ta0.5O3. As for PZT-PFN, there appear to be two discrete instabilities rather than simply a reorientation of the electric dipole in the transition sequence cubic-tetragonal-monoclinic, and the second transition has characteristics typical of an improper ferroelastic. At intermediate compositions, the ferroelastic microstructure has strain heterogeneities on a mesoscopic length scale and, probably, also on a microscopic scale. This results in a wide anelastic freezing interval for strain-related defects rather than the freezing of discrete twin walls that would occur in a conventional ferroelastic material. In PFT, however, the acoustic loss behaviour more nearly resembles that due to freezing of conventional ferroelastic twin walls. Precursor softening of the shear modulus in both PFT and PFN does not fit with a Vogel-Fulcher description, but in PFT there is a temperature interval where the softening conforms to a power law suggestive of the role of fluctuations of the order parameter with dispersion along one branch of the Brillouin zone. Magnetic ordering appears to be coupled only weakly with a volume strain and not with shear strain but, as with multiferroic PZT-PFN perovskites, takes place within crystals which have significant strain heterogeneities on different length scales.

3.
J Phys Condens Matter ; 27(28): 285901, 2015 Jul 22.
Article in English | MEDLINE | ID: mdl-26125192

ABSTRACT

Resonant Ultrasound Spectroscopy has been used to characterize elastic and anelastic anomalies in a polycrystalline sample of multiferroic Pb(Fe(0.5)Nb(0.5))O(3) (PFN). Elastic softening begins at ~550 K, which is close to the Burns temperature marking the development of dynamical polar nanoregions. A small increase in acoustic loss at ~425 K coincides with the value of T(*) reported for polar nanoregions starting to acquire a static or quasi-static component. Softening of the shear modulus by ~30-35% through ~395-320 K, together with a peak in acoustic loss, is due to classical strain/order parameter coupling through the cubic → tetragonal → monoclinic transition sequence of ferroelectric/ferroelastic transitions. A plateau of high acoustic loss below ~320 K is due to the mobility under stress of a ferroelastic microstructure but, instead of the typical effects of freezing of twin wall motion at some low temperature, there is a steady decrease in loss and increase in elastic stiffness below ~85 K. This is attributed to freezing of a succession of strain-coupled defects with a range of relaxation times and is consistent with a report in the literature that PFN develops a tweed microstructure over a wide temperature interval. No overt anomaly was observed near the expected Néel point, ~145 K, consistent with weak/absent spin/lattice coupling but heat capacity measurements showed that the antiferromagnetic transition is actually smeared out or suppressed. Instead, the sample is weakly ferromagnetic up to ~560 K, though it has not been possible to exclude definitively the possibility that this could be due to some magnetic impurity. Overall, evidence from the RUS data is of a permeating influence of static and dynamic strain relaxation effects which are attributed to local strain heterogeneity on a mesoscopic length scale. These, in turn, must have a role in determining the magnetic properties and multiferroic character of PFN.

4.
Biochemistry ; 42(49): 14599-605, 2003 Dec 16.
Article in English | MEDLINE | ID: mdl-14661972

ABSTRACT

Multimeric enzymes that lose their quaternary structure often cease to be catalytically competent. In these cases, conformational stability depends on contacts between subunits, and minor mutations affecting the surface of the monomers may affect overall stability. This effect may be sensitive to pH, temperature, or solvent composition. We investigated the role of oligomeric structure in protein stability by heat and chemical denaturation of hexameric nucleoside diphosphate kinase from Dictyostelium discoideum and its P105G mutant over a wide range of pH. The wild-type enzyme has been reported to unfold without prior dissociation into monomers, whereas monomer unfolding follows dissociation for the P105G mutant (Giartosio et al. (1996) J. Biol. Chem. 271, 17845-51). We show here that these features are also preserved at alkaline pH, with the wild-type enzyme always hexameric at room temperature whereas the mutant dissociates into monomers at pH >or=10. In acidic conditions (pH

Subject(s)
Dictyostelium/enzymology , Nucleoside-Diphosphate Kinase/chemistry , Amino Acid Substitution/genetics , Anilino Naphthalenesulfonates/chemistry , Animals , Calorimetry, Differential Scanning , Chromatography, Gel , Circular Dichroism , Enzyme Activation , Enzyme Stability , Fluorescent Dyes/chemistry , Hydrogen-Ion Concentration , Nucleoside-Diphosphate Kinase/metabolism , Protein Binding , Protein Denaturation , Protein Folding , Protein Renaturation , Protein Structure, Quaternary , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Spectrometry, Fluorescence , Thermodynamics , Urea/chemistry
5.
Biochemistry ; 40(15): 4583-9, 2001 Apr 17.
Article in English | MEDLINE | ID: mdl-11294625

ABSTRACT

The source of affinity for substrates of human nucleoside diphosphate (NDP) kinases is particularly important in that its knowledge could be used to design more effective antiviral nucleoside drugs (e.g., AZT). We carried out a microcalorimetric study of the binding of enzymes from two organisms to various nucleotides. Isothermal titration calorimetry has been used to characterize the binding in terms of Delta G degrees, Delta H degrees and Delta S degrees. Thermodynamic parameters of the interaction of ADP with the hexameric NDP kinase from Dictyostelium discoideum and with the tetrameric enzyme from Myxococcus xanthus, at 20 degrees C, were similar and, in both cases, binding was enthalpy-driven. The interactions of ADP, 2'deoxyADP, GDP, and IDP with the eukaryotic enzyme differed in enthalpic and entropic terms, whereas the Delta G degrees values obtained were similar due to enthalpy--entropy compensation. The binding of the enzyme to nonphysiological nucleotides, such as AMP--PNP, 3'deoxyADP, and 3'-deoxy-3'-amino-ADP, appears to differ in several respects. Crystallography of the protein bound to 3'-deoxy-3'-amino-ADP showed that the drug was in a distorted position, and was unable to interact correctly with active site side chains. The interaction of pyrimidine nucleoside diphosphates with the hexameric enzyme is characterized by a lower affinity than that with purine nucleotides. Titration showed the stoichiometry of the interaction to be abnormal, with 9--12 binding sites/hexamer. The presence of supplementary binding sites might have physiological implications.


Subject(s)
Nucleoside-Diphosphate Kinase/chemistry , Purine Nucleotides/chemistry , Adenosine Diphosphate/analogs & derivatives , Adenosine Diphosphate/chemistry , Adenosine Triphosphate/analogs & derivatives , Adenosine Triphosphate/chemistry , Adenylyl Imidodiphosphate/chemistry , Animals , Binding Sites , Calorimetry, Differential Scanning/methods , Crystallography, X-Ray , Dictyostelium/enzymology , Guanosine Diphosphate/chemistry , Humans , Inosine Diphosphate/chemistry , Myxococcus xanthus/enzymology , Thermodynamics , Thymine Nucleotides/chemistry , Titrimetry
6.
Eur J Biochem ; 268(7): 1972-81, 2001 Apr.
Article in English | MEDLINE | ID: mdl-11277919

ABSTRACT

The human DRnm23 gene was identified by differential screening of a cDNA library obtained from chronic myeloid leukaemia-blast crisis primary cells. The over-expression of this gene inhibits differentiation and induces the apoptosis of myeloid precursor cell lines. We overproduced in bacteria a truncated form of the encoded protein lacking the first 17 N-terminal amino acids. This truncated protein was called nucleoside diphosphate (NDP) kinase CDelta. NDP kinase CDelta had similar kinetic properties to the major human NDP kinases A and B, but was significantly more stable to denaturation by urea and heat. Analysis of denaturation by urea, using size exclusion chromatography, indicated unfolding without the dissociation of subunits, whereas renaturation occurred via a folded monomer. The stability of the protein depended primarily on subunit interactions. Homology modelling of the structure of NDP kinase CDelta, based on the crystal structure of NDP kinase B, indicated that NDP kinase CDelta had several additional stabilizing interactions. The overall structure of the two enzymes appears to be identical because NDP kinase CDelta readily formed mixed hexamers with NDP kinase A. It is possible that mixed hexamers can be observed in vivo.


Subject(s)
Isoenzymes/genetics , Isoenzymes/metabolism , Nucleoside-Diphosphate Kinase/genetics , Nucleoside-Diphosphate Kinase/metabolism , Amino Acid Sequence , Blotting, Western , Catalysis , Enzyme Stability , Hot Temperature , Humans , Models, Molecular , Molecular Sequence Data , Monomeric GTP-Binding Proteins/genetics , Monomeric GTP-Binding Proteins/metabolism , NM23 Nucleoside Diphosphate Kinases , Neuroblastoma/enzymology , Protein Denaturation , Sequence Alignment , Sequence Homology, Amino Acid , Structure-Activity Relationship , Transcription Factors/genetics , Transcription Factors/metabolism , Tumor Cells, Cultured , Urea/pharmacology
7.
Exp Cell Res ; 261(1): 127-38, 2000 Nov 25.
Article in English | MEDLINE | ID: mdl-11082283

ABSTRACT

Nucleoside diphosphate kinases (Nm23/NDPK) are enzymes functional in cell proliferation, differentiation, development, tumor progression, and metastasis. Nevertheless, no consensus exists about the molecular mechanism by which Nm23/NDPK isoforms exert their role in these processes. We investigated the expression of the rat Nm23-R1/NDPKbeta and Nm23-R2/NDPKalpha isoforms, homologues of the human Nm23-H1/NDPK A and Nm23-H2/NDPK B proteins, respectively, upon cAMP-induced differentiation of rat C6 glioma cells and demonstrated a differential interaction with intermediate filaments. Semiquantitative RT-PCR, immunoblotting, and flow cytometry showed a constitutive expression of both Nm23 isoforms. After induction of differentiation in C6 cells with cAMP analogs or isoproterenol, a dose-dependent 2- and 2.5-fold upregulation of the Nm23-R1 mRNA and protein, respectively, was observed. In contrast, the expression of Nm23-R2 remained unchanged. Localization of both isoforms with confocal laser scanning microscopy demonstrated a punctate reticular staining pattern for both Nm23 isoforms in the cytosol and processes of the cells which was particularly intense in the perinuclear region. In addition, while Nm23-R2 was colocalized and coimmunoprecipitated with vimentin in nondifferentiated cells, both isoforms were associated with GFAP in differentiated cells. The significance of these findings in relation to a possible function of Nm23 isoforms in cell proliferation, differentiation, and tumor-associated mechanisms is discussed.


Subject(s)
Cell Differentiation/physiology , Cyclic AMP/physiology , Gene Expression Regulation, Enzymologic , Intermediate Filaments/physiology , Monomeric GTP-Binding Proteins/genetics , Monomeric GTP-Binding Proteins/metabolism , Transcription Factors/genetics , Transcription Factors/metabolism , 8-Bromo Cyclic Adenosine Monophosphate/pharmacology , Animals , Bucladesine/pharmacology , Cytosol/enzymology , Gene Expression Regulation, Enzymologic/drug effects , Glioma , Humans , Isoenzymes/genetics , Isoenzymes/metabolism , Isoproterenol/pharmacology , Kinetics , NM23 Nucleoside Diphosphate Kinases , Nucleoside-Diphosphate Kinase/genetics , Nucleoside-Diphosphate Kinase/metabolism , Protein Biosynthesis , Rats , Reverse Transcriptase Polymerase Chain Reaction , Transcription, Genetic , Tumor Cells, Cultured
8.
J Biol Chem ; 275(19): 14264-72, 2000 May 12.
Article in English | MEDLINE | ID: mdl-10799505

ABSTRACT

We demonstrate here the catalytic activity and subcellular localization of the Nm23-H4 protein, product of nm23-H4, a new member of the human nm23/nucleoside diphosphate (NDP) kinase gene family (Milon, L., Rousseau-Merck, M., Munier, A., Erent, M., Lascu, I., Capeau, J., and Lacombe, M. L. (1997) Hum. Genet. 99, 550-557). Nm3-H4 was synthesized in escherichia coli as the full-length protein and as a truncated form missing the N-terminal extension characteristic of mitochondrial targeting. The truncated form possesses NDP kinase activity, whereas the full-length protein is inactive, suggesting that the extension prevents enzyme folding and/or activity. X-ray crystallographic analysis was performed on active truncated Nm23-H4. Like other eukaryotic NDP kinases, it is a hexamer. Nm23-H4 naturally possesses a serine residue at position 129, equivalent to the K-pn mutation of the Drosophila NDP kinase. The x-ray structure shows that the presence of Ser(129) has local structural effects that weaken subunit interactions. Site-directed mutagenesis shows that the serine is responsible for the lability of Nm23-H4 to heat and urea treatment, because the S129P mutant is greatly stabilized. Examination of human embryonic kidney 293 cells transfected with green fluorescent protein fusions by confocal microscopy shows a specific mitochondrial localization of Nm23-H4 that was also demonstrated by Western blot analysis of subcellular fractions of these cells. Import into mitochondria is accompanied by cleavage of the N-terminal extension that results in NDP kinase activity. Submitochondrial fractionation indicates that Nm23-H4 is associated with mitochondrial membranes, possibly to the contact sites between the outer and inner membranes.


Subject(s)
Mitochondria/enzymology , Monomeric GTP-Binding Proteins/genetics , Nucleoside-Diphosphate Kinase/genetics , Transcription Factors/genetics , Base Sequence , Cell Line, Transformed , DNA Primers , DNA, Complementary , Humans , Microscopy, Confocal , Models, Molecular , Molecular Sequence Data , Monomeric GTP-Binding Proteins/chemistry , Monomeric GTP-Binding Proteins/isolation & purification , NM23 Nucleoside Diphosphate Kinases , Nucleoside Diphosphate Kinase D , Nucleoside-Diphosphate Kinase/chemistry , Nucleoside-Diphosphate Kinase/isolation & purification , Transcription Factors/chemistry , Transcription Factors/isolation & purification
9.
J Bioenerg Biomembr ; 32(3): 237-46, 2000 Jun.
Article in English | MEDLINE | ID: mdl-11768307

ABSTRACT

Nucleoside diphosphate kinases catalyze the reversible transfer of the gamma phosphate of nucleoside triphosphates to nucleoside diphosphates. This minireview presents recent advances in understanding the reaction mechanism using steady-state and fast kinetic studies, X-ray crystallography, and site-directed mutagenesis. We also briefly discuss the physiological relevance of in vitro studies.


Subject(s)
Nucleoside-Diphosphate Kinase/metabolism , Animals , Catalysis , Cations, Divalent , Enzyme Inhibitors/pharmacology , Humans , Kinetics , Metals , Nucleoside-Diphosphate Kinase/antagonists & inhibitors , Nucleoside-Diphosphate Kinase/physiology , Phosphorylation , Substrate Specificity
10.
Biochemistry ; 38(22): 7265-72, 1999 Jun 01.
Article in English | MEDLINE | ID: mdl-10353838

ABSTRACT

Nucleoside diphosphate (NDP) kinases display low specificity with respect to the base moiety of the nucleotides and to the 2'-position of the ribose, but the 3'-hydroxyl is found to be important for catalysis. We report in this paper the enzymatic analysis of a series of derivatives of thymidine diphosphate (TDP) where the 3'-OH group was removed or replaced by fluorine, azido, and amino groups. With Dictyostelium NDP kinase, kcat decreases 15-200-fold from 1100 s-1 with TDP, and (kcat/Km)NDP decreases from 12 x 10(6) to 10(3) to 5 x 10(4) M-1 s-1, depending on the substrate. The poorest substrates are 3'-deoxyTDP and 3'-azido-3'-deoxyTDP, while the best modified substrates are 2',3'-dehydro-3'-deoxyTDP and 3'-fluoro-3'-deoxyTDP. In a similar way, 3'-fluoro-2',3'-dideoxyUDP was found to be a better substrate than 2',3'-dideoxyUDP, but a much poorer substrate than 2'-deoxyUDP. (kcat/Km)NDP is sensitive to the viscosity of the solution with TDP as the substrate but not with the modified substrates. To understand the poor catalytic efficiency of the modified nucleotides at a structural level, we determined the crystal structure of Dictyostelium NDP kinase complexed to 3'-fluoro-2',3'-dideoxyUDP at 2.7 A resolution. Significant differences are noted as compared to the TDP complex. Substrate-assisted catalysis by the 3'-OH, which is effective in the NDP kinase reaction, cannot occur with the modified substrate. With TDP, the beta-phosphate, which is the leaving group when a gamma-phosphate is transferred to His122, hydrogen bonds to the 3'-hydroxyl group of the sugar; with 3'-fluoro-2',3'-dideoxyUDP, the beta-phosphate hydrogen bonds to Asn119 and moves away from the attacking Ndelta of the catalytic His122. Since all anti-AIDS nucleoside drugs are modified at the 3'-position, these results are relevant to the role of NDP kinase in their cellular metabolism.


Subject(s)
Deoxyribonucleotides/chemistry , Nucleoside-Diphosphate Kinase/chemistry , Animals , Catalysis , Crystallography, X-Ray , Dictyostelium/enzymology , Dideoxynucleosides/chemistry , Kinetics , Models, Chemical , Structure-Activity Relationship , Thymine Nucleotides/chemistry , Viscosity , Zidovudine/chemistry
11.
J Bacteriol ; 180(16): 4291-3, 1998 Aug.
Article in English | MEDLINE | ID: mdl-9696781

ABSTRACT

The wild-type TMP kinases from Escherichia coli and from a strain hypersensitive to 5-bromo-2'-deoxyuridine were characterized comparatively. The mutation at codon 146 causes the substitution of an alanine residue for glycine in the enzyme, which is accompanied by changes in the relative affinities for 5-Br-UMP and TMP compared to those of the wild-type TMP kinase. Plasmids carrying the wild-type tmk gene from Escherichia coli or Bacillus subtilis, but not the defective tmk gene, restored the resistance to bromodeoxyuridine of an E. coli mutant strain.


Subject(s)
Antimetabolites/pharmacology , Bromodeoxyuridine/pharmacology , Escherichia coli/drug effects , Nucleoside-Phosphate Kinase/metabolism , Alanine/metabolism , Amino Acid Sequence , Amino Acid Substitution , Catalysis , Cloning, Molecular , Escherichia coli/enzymology , Escherichia coli/genetics , Glycine/metabolism , Molecular Sequence Data , Nucleoside-Phosphate Kinase/genetics , Plasmids , Sequence Homology, Amino Acid , Transformation, Bacterial
12.
Biochemistry ; 37(23): 8457-64, 1998 Jun 09.
Article in English | MEDLINE | ID: mdl-9622497

ABSTRACT

The reversible heat- and GuHCl-induced unfolding of bovine serum fetuin (BSF) has been studied by differential scanning calorimetry, circular dicroism, tryptophan fluorescence, and size-exclusion chromatography. We show here that thermal unfolding of BSF occurs in two distinct steps corresponding to transitions from the native (N) to an intermediate (I) and from the intermediate to the unfolded state (U). The Nleft and right arrow I transition is highly cooperative and can well be accounted for by a two-state mechanism. The Ileft and right arrow U transition is also cooperative but to a lesser extent than the Nleft and right arrow I transition. CD spectra show that the protein in the I state retains nearly all of the native secondary structure and has a largely disrupted tertiary structure. However, the hydrophobic environment of the single tryptophan residue is not changed, and some compactness is retained in the I state. The structural properties of this intermediate state are apparently characteristic of a molten globule. The GuHCl-induced unfolding is also a two-step process with an I state around 2 M GuHCl. Although the structural features of the denaturant-induced I state are somewhat different from those of the heat-induced I state, the unfolding free energies DeltaG degreesNleft and right arrow I and DeltaG degreesIleft and right arrow U as well as DeltaG degreesNleft and right arrow U obtained from these two methods are comparable. We argue that the observed two-state Nleft and right arrow I transition is due to the melting of the tertiary packing, while leaving quasi-intact the secondary structure and some long-range interactions in the I state. These long-range interactions, together with the secondary structural elements, would be responsible for the observed cooperativity of the Ileft and right arrow U transition.


Subject(s)
Protein Folding , Thermodynamics , alpha-Fetoproteins/chemistry , Animals , Calorimetry, Differential Scanning , Cattle , Chromatography, Gel , Circular Dichroism , Guanidine , Spectrometry, Fluorescence , Temperature
13.
J Biol Chem ; 272(25): 15599-602, 1997 Jun 20.
Article in English | MEDLINE | ID: mdl-9188446

ABSTRACT

The point mutation serine 120 to glycine in the human nucleoside diphosphate kinase A has been identified in several aggressive neuroblastomas (Chang, C. L., Zhu, X. X., Thoraval, D. H., Ungar, D., Rawwas, J., Hora, N., Strahler, J. R., Hanash, S. M. & Radany, E. (1994) Nature 370, 335-336). We expressed in bacteria and purified wild-type and S120G mutant nucleoside diphosphate kinase A. The mutant enzyme had enzymatic and structural properties similar to the wild-type enzyme, whereas its stability to denaturation by heat and urea was markedly reduced. More importantly, upon renaturation of the urea-denatured mutant protein, a folding intermediate accumulated, having the characteristics of a molten globule. It had no tertiary structure, as shown by near UV circular dichroism, whereas the secondary structure was substantially recovered. The hydrophobic probe 8-anilino-1-naphthalene sulfonate bound to the intermediate species with an increase in fluorescence intensity and a blue shift. The hydrodynamic size was between that expected for a folded and an unfolded monomer. Finally, electrophoresis in a transverse urea gradient displayed no renaturation curve, and the protein showed the tendency to aggregate at the lowest urea concentrations. The existence of a molten globule folding intermediates resulting from an altered folding in the mutated protein might be related to the aggressiveness of neuroblastomas.


Subject(s)
Antigens, Neoplasm/genetics , Monomeric GTP-Binding Proteins , Neuroblastoma/enzymology , Nucleoside-Diphosphate Kinase/genetics , Point Mutation , Protein Folding , Transcription Factors/genetics , Antigens, Neoplasm/chemistry , Chromatography, Gel , Circular Dichroism , Glycine , Humans , Kinetics , Molecular Weight , NM23 Nucleoside Diphosphate Kinases , Neuroblastoma/genetics , Nucleoside-Diphosphate Kinase/chemistry , Serine , Transcription Factors/chemistry
14.
Hum Genet ; 99(4): 550-7, 1997 Apr.
Article in English | MEDLINE | ID: mdl-9099850

ABSTRACT

A novel human nm23/nucleoside diphosphate (NDP) kinase gene, called nm23-H4, was identified by screening a human stomach cDNA library with a probe generated by amplification by reverse transcription-polymerase chain reaction. The primers were designed from publicly available database cDNA sequences selected according to their homology to the human nn23-H1 putative metastasis suppressor gene. The full-length cDNA sequence predicts a 187 amino acid protein possessing the region homologous to NDP kinases with all residues crucial for nucleotide binding and catalysis, strongly suggesting that Nm23-H4 possesses NDP kinase activity. It shares 56, 55 and 60% identity with Nm23-H1, Nm23-H2 and DR-Nm23, respectively, the other human Nm23 proteins isolated so far. Compared with these proteins, Nm23-H4 contains an additional NH2-terminal region that is rich in positively charged residues and could indicate routing to mitochondria. The nm23-H4 gene has been localised to human chromosomal band 16p13.3. The corresponding 1.2 kb mRNA is widely distributed and expressed in a tissue-dependent manner, being found at very high levels in prostate, heart, liver, small intestine and skeletal muscle tissues and in low amounts in the brain and in blood leucocytes. Nm23-H4 naturally possesses the Pro-Ser substitution equivalent to the K-pn mutation (P97S) of Drosophila.


Subject(s)
Chromosome Mapping , Chromosomes, Human, Pair 16 , Monomeric GTP-Binding Proteins , Nucleoside-Diphosphate Kinase/genetics , Transcription Factors/genetics , Amino Acid Sequence , Animals , Base Sequence , DNA, Complementary , Humans , Molecular Sequence Data , Multigene Family , NM23 Nucleoside Diphosphate Kinases , Nucleoside Diphosphate Kinase D , Phylogeny , Sequence Homology, Amino Acid
15.
Biochemistry ; 35(46): 14643-50, 1996 Nov 19.
Article in English | MEDLINE | ID: mdl-8931563

ABSTRACT

Nucleoside diphosphate (NDP) kinase is the enzyme responsible in the cell for the phosphorylation of nucleoside or deoxynucleoside diphosphates into the corresponding triphosphates at the expense of ATP. Transfer of the gamma-phosphate is very fast (turnover number above 1000 s-1) and involves the phosphorylation of a histidine residue at the active site of the enzyme. We have used intrinsic protein fluorescence of the single tryptophan of Dictyostelium discoideum NDP kinase as a sensitive probe for monitoring the interaction of the enzyme with its substrates. We demonstrate that the 20% quenching of steady-state fluorescence observed upon addition of ATP is due to formation of the phosphorylated intermediate. Time-resolved fluorescence indicates that the Trp-137 side chain is rigidly bound to the protein core with a unique lifetime of 4.5 ns for the free enzyme at 20 degrees C and that it remains tightly immobilized during the time course of the reaction. Phosphorylation of this catalytic residue (His-122) in the presence of ATP induces a similar decrease in mean lifetime, due to the splitting of the signal and the appearance of a shorter decay. This splitting is discussed in terms of a slow conformational equilibrium. We demonstrate that, in the wild-type enzyme, the conserved His-55 quenches the fluorescence of Trp-137 as the H55A mutant protein fluorescence displays an increase in quantum yield. Even though H55A mutant enzyme is active, the absence of the imidazole ring prevents the detection of the phosphorylated state of His-122 by Trp-137. We conclude that His-55 serves as a relay between His-122 and Trp-137.


Subject(s)
Nucleoside-Diphosphate Kinase/metabolism , Animals , Binding Sites , Dictyostelium , Kinetics , Mutagenesis, Site-Directed , Phosphorylation , Spectrometry, Fluorescence
16.
Br J Cancer ; 74(1): 109-14, 1996 Jul.
Article in English | MEDLINE | ID: mdl-8679442

ABSTRACT

NM23 is a putative metastasis-suppressor gene for some human cancers. Here we have studied NM23 expression during melanoma progression using Northern blotting and immunocytochemistry. There was no significant difference in the average amounts of NM23 mRNA between cell lines derived from metastatic and primary melanomas. The level of NM23 mRNA was also determined for three pairs of poorly metastatic parental (P) and their highly metastatic variant (M) cell lines; the ratios for M/P were 1.2, 0.98 and 0.80. Next we used immunocytochemistry to study NM23 protein in normal skin, benign naevi and primary and metastatic melanomas. Melanocytes in all normal skin and benign samples were positive for NM23; however most primary melanomas (7/11) were not stained by the antibody. All metastatic melanoma samples (5/5) were positively stained. Findings were similar with an antiserum reactive with both forms of NM23 (H1 and H2), and with an antibody specific for NM23-H1. No relationship was apparent between NM23 immunoreactivity in primary tumours and their aggressiveness or prognosis. Hence, in contrast to the situation described for murine melanoma, the amount of NM23 mRNA or protein in human melanoma did not correlate inversely with metastasis.


Subject(s)
Melanoma/chemistry , Melanoma/pathology , Monomeric GTP-Binding Proteins , Neoplasm Proteins/analysis , Nucleoside-Diphosphate Kinase , Transcription Factors/analysis , Animals , Biopsy , Blotting, Northern , Disease Progression , Humans , Immunohistochemistry , Mice , Mice, Nude , NM23 Nucleoside Diphosphate Kinases , Neoplasm Metastasis , Tumor Cells, Cultured
17.
J Biol Chem ; 271(30): 17845-51, 1996 Jul 26.
Article in English | MEDLINE | ID: mdl-8663370

ABSTRACT

The eukaryotic nucleoside diphosphate (NDP) kinases are hexamers, while the bacterial NDP kinases are tetramers made of small, single domain subunits. These enzymes represent an ideal model for studying the effect of subunit interaction on protein stability. The thermostability of NDP kinases of each class was studied by differential scanning calorimetry and biochemical methods. The hexameric NDP kinase from Dictyostelium discoideum displays one single, irreversible differential scanning calorimetry peak (Tm 62 degrees C) over a broad protein concentration, indicating a single step denaturation. The thermal stability of the protein was increased by ADP. The P105G substitution, which affects a loop implicated in subunit contacts, yields a protein that reversibly dissociates to folded monomers at 38 degrees C before the irreversible denaturation occurs (Tm 47 degrees C). ADP delays the dissociation, but does not change the Tm. These data indicate a "coupling" of the quaternary structure with the tertiary structure in the wild-type, but not in the mutated protein. We describe the x-ray structure of the P105G mutant at 2.2-A resolution. It is very similar to that of the wild-type protein. Therefore, a minimal change in the structure leads to a dramatic change of protein thermostability. The NDP kinase from Escherichia coli behaves like the P105G mutant of the Dictyostelium NDP kinase. The detailed study of their thermostability is important, since biological effects of thermolabile NDP kinases have been described in several organisms.


Subject(s)
Nucleoside-Diphosphate Kinase/chemistry , Adenosine Diphosphate/pharmacology , Animals , Crystallography, X-Ray , Dictyostelium/enzymology , Enzyme Stability , Escherichia coli/enzymology , Hot Temperature , Kinetics , Molecular Sequence Data , Nephelometry and Turbidimetry , Nucleoside-Diphosphate Kinase/drug effects , Protein Conformation
18.
J Biol Chem ; 271(14): 7887-90, 1996 Apr 05.
Article in English | MEDLINE | ID: mdl-8626464

ABSTRACT

Nucleotide analogs are widely used in antiviral therapy and particularly against AIDS. Delivered to the cell as nucleosides, they are phosphorylated into their active triphospho derivative form by cellular kinases from the host. The last step in this series of phosphorylations is performed by nucleoside diphosphate (NDP) kinase, an enzyme that can use both purine or pyrimidine and oxy- or deoxynucleotides as substrates. Using pure recombinant human NDP kinase type B (product of the gene nm23-H2), we have characterized the kinetic parameters of several nucleotide analogs for this enzyme. Contrary to what is generally assumed, diphospho- and triphospho- derivatives of azidothymidine as well as of dideoxyadenosine and dideoxythymidine are very poor substrates for NDP kinase. The rate of phosphorylation of these analogs varies between 0.05% and 0.5%, as compared to the corresponding natural nucleotide, a result that is not due to the inability of the analogs to bind to the enzyme. Using the data from the high resolution crystal structure of NDP kinase, we provide an interpretation of these results based on the crucial role played by the 3'-OH moiety of the nucleotide in catalysis.


Subject(s)
Antiviral Agents/metabolism , Dideoxynucleosides/metabolism , Nucleoside-Diphosphate Kinase/metabolism , Animals , Binding Sites , Dictyostelium/enzymology , Dideoxyadenosine/metabolism , Humans , Kinetics , Recombinant Proteins , Structure-Activity Relationship , Substrate Specificity , Zidovudine/analogs & derivatives , Zidovudine/metabolism
19.
World J Urol ; 14 Suppl 1: S21-5, 1996.
Article in English | MEDLINE | ID: mdl-8738406

ABSTRACT

Overexpression of the nm23H1 gene has been associated with the suppression of metastasis in several solid tumors. However, in colorectal carcinoma and neuroblastoma, increased levels of nm23 H1 nucleoside diphosphate kinase A (NDPKA) mRNA are associated with tumorigenesis. To determine the role of nm23 H1/NDPKA in the prostate, normal and/or malignant tissue samples from 29 consecutive patients were studied. Levels of nm23 H1/NDPKA mRNA and nm23 H1/NDPKA mRNA protein were determined in tissue from 18 and 27 patients, respectively. In all, 16 of the 18 tumor samples expressed increased levels of nm23 H1/NDPKA mRNA as compared with those measured in normal tissue. The level of nm23 H1/NDPKA mRNA was > 10-fold higher in a metastatic lymph node than in normal prostate tissue. All cancer specimens and areas of prostatic intraepithelial neoplasia showed immunoreactivity with the nm23 H1/NDPKA antibody; however, normal prostatic tissue was unreactive. These findings suggest that overexpression of the nm23 H1/NDPKA gene occurs frequently in adeno-carcinomas of the prostate and may be an early event in prostate cancer tumorigenesis.


Subject(s)
Adenocarcinoma/enzymology , Monomeric GTP-Binding Proteins , Nucleoside-Diphosphate Kinase/metabolism , Prostatic Neoplasms/enzymology , RNA, Messenger/analysis , Transcription Factors/metabolism , Adenocarcinoma/pathology , Blotting, Northern , Disease Progression , Humans , Immunohistochemistry , Male , NM23 Nucleoside Diphosphate Kinases , Nucleoside-Diphosphate Kinase/genetics , Prognosis , Prostatic Neoplasms/pathology , Reference Values , Sensitivity and Specificity , Transcription Factors/genetics
20.
Gut ; 37(5): 712-20, 1995 Nov.
Article in English | MEDLINE | ID: mdl-8549951

ABSTRACT

Although a reduced expression of nm23 has been shown to correlate with a high metastatic potential in some human cancers, in colorectal cancers, conflicting data have been reported. As there are two homologous genes, nm23-H1 and nm23-H2, which encode the A and B subunits of nucleoside diphosphate kinase, efficient and simplified techniques were designed to selectively study nm23-H1 and -H2 expression in 35 colorectal cancers at both the protein and mRNA levels by immunoblotting, immunohistochemistry, and reverse transcription polymerase chain reaction (RT PCR) using specific antibodies and primers. Nm23-H1 and Nm23-H2 proteins were overexpressed in tumours compared with adjacent mucosa. This overexpression was lost, however, in some advanced cases: 89% and 81% of TNM (tumour, node, metastases) stages 0-II showed Nm23-H1 and -H2 overexpression, respectively, which significantly differed from 47% and 38% of stage III-IV tumours. Similar results were seen with nm23-H1 mRNA. Heterogenous labelling of tumoral cells was seen by immunohistological staining. This suggests a dichotomy: an overexpression of nm23-H1 and -H2 linked to early stages of cancer and a loss of nm23-H1 overexpression seen in more advanced stages. Therefore specific nm23-H1 determination should be evaluated as a prognostic factor in human colorectal carcinoma.


Subject(s)
Adenocarcinoma/genetics , Colorectal Neoplasms/genetics , Gene Expression , Monomeric GTP-Binding Proteins , Transcription Factors/analysis , Adenocarcinoma/pathology , Adult , Aged , Aged, 80 and over , Base Sequence , Colorectal Neoplasms/pathology , Female , Humans , Immunohistochemistry , In Vitro Techniques , Liver Neoplasms/genetics , Liver Neoplasms/secondary , Male , Middle Aged , Molecular Sequence Data , NM23 Nucleoside Diphosphate Kinases , Neoplasm Staging , Nucleoside-Diphosphate Kinase/analysis
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