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1.
Biochim Biophys Acta Biomembr ; 1864(10): 184011, 2022 10 01.
Article in English | MEDLINE | ID: mdl-35872033

ABSTRACT

Phenolic acids represent a class of drugs with mild antibacterial properties. We have synthesized iodinated gallic and ferulic acids and together with commercially available iodinated forms of salicylic acids studied their cytotoxicity, bacteriostatic and anti-virulence action. Out of these, iodogallic acid had lowest minimal inhibitory concentration (MIC) against Staphylococcus aureus (MIC = 0.4 mM/118.8 µg/ml). Yet, it had strong effect on erythrocyte membrane lipid ordering and on α-hemolysin secretion by the bacteria at lower non-bacteriostatic and non-cytotoxic concentrations (<0.1 mM). Iodogallic acid formed static complexes with α-hemolysin in solutions (logKb = 4.69 ± 0.07) and inhibited its nano-pore conduction in artificial lipid bilayers (IC50 = 37.9 ± 5.3 µM). These effects of iodogallic acid converged on prevention of hemolysis induced by α-hemolysin (IC50 = 41.5 ± 4.2 µM) and pointed to enhanced and diverse anti-virulence properties of some aryl iodides. The analysis of molecular surface electrostatic charge distribution, molecular hydrophilicity, electronegativity, and dipole moment of studied compounds suggested the importance of the number of hydroxyl groups and their proximity to iodine in anti-virulence activity manifestation. In iodogallic acid, charge redistribution resulted in higher hydrophilicity without concomitant change in overall molecular electronegativity and dipole moment compared to non-iodinated gallic acid. This study shows new directions for the development of antibacterial/antivirulence therapeutics.


Subject(s)
Hemolysin Proteins , Iodides , Anti-Bacterial Agents/pharmacology , Iodides/pharmacology , Microbial Sensitivity Tests , Staphylococcus aureus
2.
J Shoulder Elbow Surg ; 30(2): 282-289, 2021 Feb.
Article in English | MEDLINE | ID: mdl-32603897

ABSTRACT

BACKGROUND: There is limited evidence on clinical outcomes of arthroscopic partial repair (APR) and latissimus dorsi tendon transfer (LDTT) for posterosuperior massive rotator cuff tears (mRCTs). We aimed to compare clinical outcomes of APR and LDTT for partially repairable posterosuperior mRCTs and to determine whether outcomes differ among tears that involve the teres minor. METHODS: We retrieved the records of 112 consecutive patients with mRCTs deemed partially repairable due to fatty infiltration (FI) stage ≥3 in one or more rotator cuff muscles. Of the tears, 12 involved the subscapularis, 32 were managed conservatively, 14 were treated by reverse shoulder arthroplasty, and 7 were treated by stand-alone biceps tenotomy. Of the remaining 47 shoulders, 26 underwent APR and 21 underwent LDTT. At a minimum of 12 months, we recorded complications, active forward elevation, external rotation, the Constant-Murley score, American Shoulder and Elbow Surgeons (ASES) score, Subjective Shoulder Value (SSV), and Simple Shoulder Test (SST) score. RESULTS: No significant differences between the APR and LDTT groups were found in terms of follow-up (23.4 ± 3.5 months vs. 22.1 ± 4.1 months, P = .242), Constant-Murley score (64.8 ± 13.7 vs. 58.9 ± 20.0, P = .622), ASES score (78.3 ± 19.3 vs. 74.4 ± 14.5, P = .128), active forward elevation (158.1° ± 19.4° vs. 142.8° ± 49.1°, P = .698), or external rotation (33.3° ± 17.4° vs. 32.2° ± 20.9°, P = .752). By contrast, the APR group had a higher SSV (73.3 ± 17.5 vs. 59.5 ± 20.0, P = .010), and SST score (8.3 ± 2.4 vs. 6.4 ± 3.0, P = .024). Univariable analysis revealed that advanced FI of the teres minor compromised Constant-Murley scores (ß = -25.8, P = .001) and tended to compromise ASES scores (ß = -15.2, P = .062). Multivariable analysis corroborated that advanced FI of the teres minor compromised Constant-Murley scores (ß = -26.9, P = .001) and tended to compromise ASES scores (ß = -16.5, P = .058). CONCLUSION: Both APR and LDTT granted similar early clinical outcomes for partially repairable posterosuperior mRCTs, regardless whether the teres minor was intact or torn. Advanced FI of the teres minor was the only independent factor associated with outcomes, as it significantly compromised Constant-Murley scores and tended to compromise ASES scores.


Subject(s)
Rotator Cuff Injuries , Superficial Back Muscles , Arthroscopy , Humans , Range of Motion, Articular , Rotator Cuff/surgery , Rotator Cuff Injuries/surgery , Tendon Transfer , Treatment Outcome
3.
Chemphyschem ; 21(1): 83-89, 2020 01 03.
Article in English | MEDLINE | ID: mdl-31659835

ABSTRACT

The straightforward synthesis of a new hexahomotrioxacalix[3]arene-based ligand capped by a tren subunit was developed and the binding properties of the corresponding zinc complex were explored by NMR spectroscopy. Similarly to the closely related calix[6]tren-based systems, the homooxacalixarene core ensures the mononuclearity of the zinc complex and the metal center displays a labile coordination site for exogenous guests. However, very different host-guest properties were observed: i) in CDCl3 , the zinc complex strongly binds a water molecule and is reluctant to recognize other neutral guests, ii) in CD3 CN, the exo-coordination of anions prevails. Thus, in strong contrast to the calix[6]tren-based systems, the coordination of neutral guests that thread through the small rim and fill the polyaromatic cavity was not observed. This unique behaviour is likely due to the fact that the 18-membered ethereal macrocycle is too small to let a molecule threading through it. This work illustrates the key role played by the second coordination sphere in the binding properties of metal complexes.

4.
PeerJ ; 6: e4256, 2018.
Article in English | MEDLINE | ID: mdl-29379684

ABSTRACT

Platanthera bifolia and P. chlorantha are terrestrial and rewarding orchids with a wide Eurasian distribution. Although genetically closely related, they exhibit significant morphological, phenological and ecological differences that maintain reproductive isolation between the species. However, where both species co-occur, individuals with intermediate phenotypic traits, often considered as hybrids, are frequently observed. Here, we combined neutral genetic markers (AFLPs), morphometrics and floral scent analysis (GC-MS) to investigate two mixed Platanthera populations where morphologically intermediate plants were found. Self-pollination experiments revealed a low level of autogamy and artificial crossings combined with assessments of fruit set and seed viability, showed compatibility between the two species. The results of the genetic analyses showed that morphologically intermediate plants had similar genetic patterns as the P. bifolia group. These results are corroborated also by floral scent analyses, which confirmed a strong similarity in floral scent composition between intermediate morphotypes and P. bifolia. Therefore, this study provided a much more detailed picture of the genetic structure of a sympatric zone between two closely allied species and supports the hypothesis that intermediate morphotypes in sympatry could reflect an adaptive evolution in response to local pollinator-mediated selection.

5.
Article in English | MEDLINE | ID: mdl-23588300

ABSTRACT

Fengycin is a natural lipopeptide with antifungal and eliciting properties and able to inhibit the activity of phospholipase A2. A combination of CD, FT-IR, NMR and fluorescence spectroscopic techniques was applied to elucidate its conformation in a membrane-mimicking environment and to investigate the effect of calcium ions on it. We mainly observed that fengycin adopts a turn conformation. Our results showed that calcium ions are bound by the two charged glutamates. The calcium binding has an influence on the fengycin conformation and more particularly, on the environment of the tyrosine residues. The modulation of the fengycin conformation by the environmental conditions may influence its biological properties.


Subject(s)
Antifungal Agents/chemistry , Bacillus subtilis/chemistry , Calcium/chemistry , Lipopeptides/chemistry , Amino Acid Sequence , Antifungal Agents/metabolism , Bacillus subtilis/metabolism , Binding Sites , Calcium/metabolism , Circular Dichroism , Lipopeptides/metabolism , Nuclear Magnetic Resonance, Biomolecular , Protein Structure, Secondary , Spectrometry, Fluorescence , Spectroscopy, Fourier Transform Infrared
6.
Prep Biochem Biotechnol ; 42(4): 348-63, 2012.
Article in English | MEDLINE | ID: mdl-22708812

ABSTRACT

Four co-solvents (dimethylformamide [DMF], formamide, dimethyl sulfoxide [DMSO], and pyridine) were tested with tert-butanol (tBut) to optimize the initial rate (v0) and yield of mannosyl myristate synthesis by esterification catalyzed by immobilized lipase B from Candida antarctica. Ten percent by volume of DMSO resulted in the best improvement of v0 and 48-hr yield (respectively 115% and 13% relative gain compared to pure tBut). Use of molecular sieve (5% w/v) enhances the 48-hr yield (55% in tBut/DMSO [9:1, v/v]). Transesterification in tBut/DMSO (9:1, v/v) with vinyl myristate leads to further improvement of v0 and 48-hr yield: a relative gain of 85% and 65%, respectively, without sieve and 25% and 10%, respectively, with sieve, compared to esterification. No difference in v0 and 48-hr yield is observed when transesterification is carried out with or without sieve.


Subject(s)
Candida/enzymology , Enzymes, Immobilized/metabolism , Lipase/metabolism , Mannose/metabolism , Myristic Acid/metabolism , Biotechnology/methods , Candida/metabolism , Enzymes, Immobilized/chemistry , Esterification , Fatty Acids/metabolism , Lipase/chemistry , Mannose/analogs & derivatives , Protein Denaturation , Solvents/chemistry
7.
Carbohydr Res ; 346(14): 2121-5, 2011 Oct 18.
Article in English | MEDLINE | ID: mdl-21820104

ABSTRACT

A novel class of surface-active carbohydrate esters is prepared by a two-step strategy that takes advantage of the selectivity of enzymatic catalysis and the versatility of the thiol-Michael addition reaction. The surfactant performance of the produced aliphatic, fluorinated and silicon based sugar esters are evaluated by surface tension measurements. The novel thiolated mannose, made available in this work, appears as a powerful building block for the incorporation of unprotected sugar moieties into complex molecules.


Subject(s)
Biocatalysis , Carbohydrates/chemistry , Carbohydrates/chemical synthesis , Lipase/metabolism , Sulfhydryl Compounds/chemistry , Surface-Active Agents/chemistry , Surface-Active Agents/chemical synthesis , Chemistry Techniques, Synthetic , Esterification , Esters , Fungal Proteins , Mannose/chemistry , Methacrylates/chemistry
8.
Carbohydr Res ; 346(9): 1161-4, 2011 Jul 01.
Article in English | MEDLINE | ID: mdl-21536257

ABSTRACT

The lipase-catalysed esterification of sugars with hemifluorinated acid derivatives is reported for the first time. A series of mannose modified derivatives having fluorinated chains with different length have been prepared accordingly in moderate yield. A preliminary evaluation of the surface active properties of these hemifluorinated mannose esters revealed their ability to reduce the surface tension of water much more efficiently than their aliphatic counterparts.


Subject(s)
Esters/metabolism , Lipase/metabolism , Mannose/biosynthesis , Biocatalysis , Carbohydrate Conformation , Esters/chemistry , Fungal Proteins , Lipase/chemistry , Mannose/analogs & derivatives , Mannose/chemistry , Stereoisomerism , Surface Tension , Water/chemistry
9.
Genet Sel Evol ; 42: 14, 2010 May 18.
Article in English | MEDLINE | ID: mdl-20482755

ABSTRACT

BACKGROUND: Since 2002, active surveillance programmes have detected numerous atypical scrapie (AS) and classical scrapie cases (CS) in French sheep with almost all the PrP genotypes. The aim of this study was 1) to quantify the genetic risk of AS in French sheep and to compare it with the risk of CS, 2) to quantify the risk of AS associated with the increase of the ARR allele frequency as a result of the current genetic breeding programme against CS. METHODS: We obtained genotypes at codons 136, 141, 154 and 171 of the PRNP gene for representative samples of 248 AS and 245 CS cases. We used a random sample of 3,317 scrapie negative animals genotyped at codons 136, 154 and 171 and we made inferences on the position 141 by multiple imputations, using external data. To estimate the risk associated with PrP genotypes, we fitted multivariate logistic regression models and we estimated the prevalence of AS for the different genotypes. Then, we used the risk of AS estimated for the ALRR-ALRR genotype to analyse the risk of detecting an AS case in a flock homogenous for this genotype. RESULTS: Genotypes most at risk for AS were those including an AFRQ or ALHQ allele while genotypes including a VLRQ allele were less commonly associated with AS. Compared to ALRQ-ALRQ, the ALRR-ALRR genotype was significantly at risk for AS and was very significantly protective for CS. The prevalence of AS among ALRR-ALRR animals was 0.6 per thousand and was not different from the prevalence in the general population. CONCLUSION: In conclusion, further selection of ALRR-ALRR animals will not result in an overall increase of AS prevalence in the French sheep population although this genotype is clearly susceptible to AS. However the probability of detecting AS cases in flocks participating in genetic breeding programme against CS should be considered.


Subject(s)
Scrapie/genetics , Sheep/genetics , Alleles , Animals , Breeding , Codon , Gene Frequency , Genotype , Logistic Models , Prevalence , Regression Analysis , Risk Factors , Scrapie/epidemiology , Sheep/metabolism
10.
J Gen Virol ; 91(Pt 2): 575-9, 2010 Feb.
Article in English | MEDLINE | ID: mdl-19828762

ABSTRACT

Although susceptibility to scrapie is largely controlled by the PrP gene, the role of other genes that affect scrapie resistance in sheep is now confirmed. Following the detection of quantitative trait loci (QTL) on chromosomes 6 and 18 in a half-sib family with an ARQ/VRQ susceptible PrP genotype, the whole pedigree of a naturally infected flock was investigated to confirm these QTL regions in different PrP genotypes. The present study has allowed us to confirm the QTL on chromosome 18, and to demonstrate the QTL effects in several PrP genotypes.


Subject(s)
Quantitative Trait Loci , Scrapie/genetics , Sheep/genetics , Animals , Chromosome Mapping , Female , Genetic Predisposition to Disease , Male , Pedigree , PrPC Proteins/genetics , Scrapie/pathology , Time Factors
11.
Cell Stress Chaperones ; 15(4): 343-9, 2010 Jul.
Article in English | MEDLINE | ID: mdl-19838832

ABSTRACT

Susceptibility to scrapie is mainly controlled by point mutations at the PRNP locus. However, additional quantitative trait loci (QTL) have been identified across the genome including a region in OAR18. The gene which encodes the inducible form of the cytoplasmic Hsp90 chaperone (HSP90AA1) maps within this region and seems to be associated with the resistance/susceptibility to scrapie in sheep. Here, we have analyzed several polymorphisms which were previously described in the ovine HSP90AA1 5' flanking region and in intron 10 in two naturally scrapie infected Romanov sheep populations. First, we have studied 58 ARQ/VRQ animals pertaining to the sire family where the QTL influencing scrapie incubation period in OAR18 was detected. We have found a significant association between polymorphisms localized at -660 and -528 in the HSP90AA1 5' flanking region and the scrapie incubation period. These two polymorphisms have also been studied in a second sample constituted by 62 VRQ/VRQ sheep showing an extreme incubation period. Results are concordant with the first dataset. Finally, we have studied the HSP90AA1 expression in scrapie and control animals (N = 41) with different HSP90AA1 genotypes by real time PCR on blood samples. The HSP90AA1 expression rate was equivalent in CC(-600)AA(-528) and CG(-600)AG(-528) scrapie resistant animals (ARR/ARR) and was higher in their CC(-600)AA(-528) than in their CG(-600)AG(-528) scrapie susceptible counterparts (VRQ/VRQ). Our results support the hypothesis that the ovine HSP90AA1 gene acts as a modulator of scrapie susceptibility, contributing to the observed differences in the incubation period of scrapie infected animals with the same PRNP genotype.


Subject(s)
HSP90 Heat-Shock Proteins/genetics , Polymorphism, Genetic , Scrapie/genetics , 5' Flanking Region , Animals , Genetic Predisposition to Disease , Genotype , Introns , Quantitative Trait Loci , Sheep
12.
Chemistry ; 16(6): 1799-811, 2010 Feb 08.
Article in English | MEDLINE | ID: mdl-20039349

ABSTRACT

Cobalt-mediated radical coupling (CMRC) is a straightforward approach to the synthesis of symmetrical macromolecules that relies on the addition of 1,3-diene compounds onto polymer precursors preformed by cobalt-mediated radical polymerization (CMRP). Mechanistic features that make this process so efficient for radical polymer coupling are reported here. The mechanism was established on the basis of NMR spectroscopy and MALDI-MS analyses of the coupling product and corroborated by DFT calculations. A key feature of CMRC is the preferential insertion of two diene units in the middle of the chain of the coupling product mainly according to a trans-1,4-addition pathway. The large tolerance of CMRC towards the diene structure is demonstrated and the impact of this new coupling method on macromolecular engineering is discussed, especially for midchain functionalization of polymers. It is worth noting that the interest in CMRC goes beyond the field of polymer chemistry, since it constitutes a novel carbon-carbon bond formation method that could be applied to small organic molecules.

13.
Math Biosci ; 217(1): 88-99, 2009 Jan.
Article in English | MEDLINE | ID: mdl-19000701

ABSTRACT

We consider a model for the polymerization (fragmentation) process involved in infectious prion self-replication and study both its dynamics and non-zero steady state. We address several issues. Firstly, we extend a previous study of the nucleated polymerization model [M.L. Greer, L. Pujo-Menjouet, G.F. Webb, A mathematical analysis of the dynamics of prion proliferation, J. Theoret. Biol. 242 (2006) 598; H. Engler, J. Pruss, G.F. Webb, Analysis of a model for the dynamics of prions II, J. Math. Anal. Appl. 324 (2006) 98] to take into account size dependent replicative properties of prion aggregates. This is achieved by a choice of coefficients in the model that are not constant. Secondly, we show stability results for this steady state for general coefficients where reduction to a system of differential equations is not possible. We use a duality method based on recent ideas developed for population models. These results confirm the potential influence of the amyloid precursor production rate in promoting amyloidogenic diseases. Finally, we investigate how the converting factor may depend upon the aggregate size. Besides the confirmation that size-independent parameters are unlikely to occur, the present study suggests that the PrPsc aggregate size repartition is amongst the most relevant experimental data in order to investigate this dependence. In terms of prion strain, our results indicate that the PrPsc aggregate repartition could be a constraint during the adaptation mechanism of the species barrier overcoming, that opens experimental perspectives for prion amyloid polymerization and prion strain investigation.


Subject(s)
Models, Biological , Prion Diseases/metabolism , Prions/metabolism , Animals , Computer Simulation , Humans , Protein Conformation
14.
Cell Stress Chaperones ; 13(1): 19-29, 2008.
Article in English | MEDLINE | ID: mdl-18347938

ABSTRACT

Scrapie is a transmissible spongiform encephalopathy in sheep and goats. Susceptibility to this neurodegenerative disease is mainly controlled by point mutations at the PRNP locus. Other genes, apart from PRNP, have been reported to modulate resistance/susceptibility to scrapie. On the basis of several studies in Alzheimer and different transmissible spongiform encephalopathy models, HSP90AA1 was chosen as a putative positional and functional candidate gene that might be involved in the polygenic variance mentioned above. In the present work, the ovine HSP90AA1 gene including the promoter and other regulatory regions has been isolated and characterized. Several sequence polymorphisms have also been identified. FISH-mapping localized the HSP90AA1 gene on ovine chromosome OAR19q24dist, which was confirmed by linkage analysis. This chromosome region has been shown to include a quantitative trait loci (QTL) for scrapie incubation period in sheep. Expression analyses were carried out in spleen and cerebellum samples. No differences in the expression of the HSP90AA1 gene were found in any of these tissues (p > 0.05) between control and infected animal samples. Nevertheless, association analyses revealed that several polymorphisms in the 5' and 3' regions of the HSP90AA1 gene were differentially distributed among animals with different responses to scrapie infection. Thus, results presented here support the hypothesis that HSP90AA1 could be a positional and functional candidate gene modulating the response to scrapie in sheep.


Subject(s)
HSP90 Heat-Shock Proteins/genetics , Polymorphism, Single Nucleotide , Scrapie/genetics , Sheep Diseases/genetics , Sheep/genetics , Animals , Base Sequence , Cerebellum/chemistry , Chromosome Mapping/veterinary , DNA Mutational Analysis , Female , Gene Expression Profiling , Gene Frequency , Genetic Predisposition to Disease , Genotype , HSP90 Heat-Shock Proteins/physiology , Lymphocytes/chemistry , Molecular Sequence Data , Sheep/classification , Species Specificity , Spleen/chemistry , Structure-Activity Relationship
15.
Mamm Genome ; 19(2): 92-105, 2008 Feb.
Article in English | MEDLINE | ID: mdl-18202837

ABSTRACT

Scrapie is a prion disease affecting sheep and goats. Susceptibility to this neurodegenerative disease shows polygenic variance. The involvement of the laminin receptor (LRP/LR) in the metabolism and propagation of prions has previously been demonstrated. In the present work, the ovine laminin receptor gene (RPSA) was isolated, characterized, and mapped to ovine chromosome OAR19q13. Real-time RT-PCR revealed a significant decrease in RPSA mRNA in cerebellum after scrapie infection. Conversely, no differences were detected in other brain regions such as diencephalon and medulla oblongata. Association analysis showed that a polymorphism reflecting the presence of a RPSA pseudogene was overrepresented in a group of sheep resistant to scrapie infection. No amino acid change in the LRP/LR protein was found in the 126 sheep analyzed. However, interesting amino acid positions (241, 272, and 290), which could participate in the species barrier to scrapie and maybe to other transmissible spongiform encephalopathies, were identified by comparing LRP/LR sequences from various mammals with variable levels of resistance to scrapie.


Subject(s)
Receptors, Laminin/chemistry , Receptors, Laminin/genetics , Scrapie/genetics , Sheep, Domestic/genetics , Amino Acid Sequence , Animals , Base Sequence , Chromosome Mapping , Chromosomes, Mammalian/genetics , Gene Expression Regulation , Genotype , Molecular Sequence Data , Polymorphism, Genetic , Sequence Analysis, DNA , Sequence Homology, Amino Acid
16.
Mamm Genome ; 18(1): 53-63, 2007 Jan.
Article in English | MEDLINE | ID: mdl-17242860

ABSTRACT

Scrapie (SC) is a transmissible spongiform encephalopathy (TSE) in sheep and goats. Susceptibility to this neurodegenerative disease is controlled mainly by point mutations at the PRNP locus. Other genes, apart from PRNP, have been reported to modulate resistance/susceptibility to SC. On the basis of several studies on Alzheimer's disease and different TSE models, and of requirement for correct homeostasis of cytokines in brain, IL1B and IL1RN were chosen as putative positional and functional candidate genes that might be involved in the polygenic variance mentioned above. In the present work, ovine IL1B and IL1RN genes were partially isolated and characterized, including promoter and other regulatory regions. In addition, several sequence polymorphisms were identified. Furthermore, their cytogenetic positions on sheep chromosomes were determined by FISH and confirmed by linkage analysis, localizing both genes in OAR3p22, a region previously described as carrying a QTL for SC incubation period in sheep. Finally, expression analyses were carried out in eight naturally SC-infected and five uninfected sheep with the same genotype for PRNP (ARQ/ARQ). This comparison was performed using real-time RT-PCR in samples of spleen and cerebellum. Results showed differences in the expression of both cytokines in cerebellum (p < 0.05) but not in spleen (p > 0.05).


Subject(s)
Interleukin-1/genetics , Scrapie/genetics , Scrapie/immunology , Sheep/genetics , Sheep/immunology , Animals , Base Sequence , Cerebellum/immunology , Chromosome Mapping , DNA Primers/genetics , DNA, Complementary/genetics , Gene Expression , Genetic Predisposition to Disease , Interleukin 1 Receptor Antagonist Protein/genetics , Interleukin-1beta/genetics , Molecular Sequence Data , Polymorphism, Genetic , Prions/genetics , RNA, Messenger/genetics , RNA, Messenger/metabolism
17.
BMC Genomics ; 7: 194, 2006 Aug 01.
Article in English | MEDLINE | ID: mdl-16882342

ABSTRACT

BACKGROUND: Comparative mapping provides new insights into the evolutionary history of genomes. In particular, recent studies in mammals have suggested a role for segmental duplication in genome evolution. In some species such as Drosophila or maize, transposable elements (TEs) have been shown to be involved in chromosomal rearrangements. In this work, we have explored the presence of interspersed repeats in regions of chromosomal rearrangements, using an updated high-resolution integrated comparative map among cattle, man and mouse. RESULTS: The bovine, human and mouse comparative autosomal map has been constructed using data from bovine genetic and physical maps and from FISH-mapping studies. We confirm most previous results but also reveal some discrepancies. A total of 211 conserved segments have been identified between cattle and man, of which 33 are new segments and 72 correspond to extended, previously known segments. The resulting map covers 91% and 90% of the human and bovine genomes, respectively. Analysis of breakpoint regions revealed a high density of species-specific interspersed repeats in the human and mouse genomes. CONCLUSION: Analysis of the breakpoint regions has revealed specific repeat density patterns, suggesting that TEs may have played a significant role in chromosome evolution and genome plasticity. However, we cannot rule out that repeats and breakpoints accumulate independently in the few same regions where modifications are better tolerated. Likewise, we cannot ascertain whether increased TE density is the cause or the consequence of chromosome rearrangements. Nevertheless, the identification of high density repeat clusters combined with a well-documented repeat phylogeny should highlight probable breakpoints, and permit their precise dating. Combining new statistical models taking the present information into account should help reconstruct ancestral karyotypes.


Subject(s)
Chromosome Mapping/methods , Evolution, Molecular , Genome/genetics , Animals , Cattle , Chromosome Breakage , Humans , Mice , Repetitive Sequences, Nucleic Acid , Translocation, Genetic
18.
BMC Genomics ; 7: 53, 2006 Mar 16.
Article in English | MEDLINE | ID: mdl-16542434

ABSTRACT

BACKGROUND: A number of different quantitative trait loci (QTL) for various phenotypic traits, including milk production, functional, and conformation traits in dairy cattle as well as growth and body composition traits in meat cattle, have been mapped consistently in the middle region of bovine chromosome 6 (BTA6). Dense genetic and physical maps and, ultimately, a fully annotated genome sequence as well as their mutual connections are required to efficiently identify genes and gene variants responsible for genetic variation of phenotypic traits. A comprehensive high-resolution gene-rich map linking densely spaced bovine markers and genes to the annotated human genome sequence is required as a framework to facilitate this approach for the region on BTA6 carrying the QTL. RESULTS: Therefore, we constructed a high-resolution radiation hybrid (RH) map for the QTL containing chromosomal region of BTA6. This new RH map with a total of 234 loci including 115 genes and ESTs displays a substantial increase in loci density compared to existing physical BTA6 maps. Screening the available bovine genome sequence resources, a total of 73 loci could be assigned to sequence contigs, which were already identified as specific for BTA6. For 43 loci, corresponding sequence contigs, which were not yet placed on the bovine genome assembly, were identified. In addition, the improved potential of this high-resolution RH map for BTA6 with respect to comparative mapping was demonstrated. Mapping a large number of genes on BTA6 and cross-referencing them with map locations in corresponding syntenic multi-species chromosome segments (human, mouse, rat, dog, chicken) achieved a refined accurate alignment of conserved segments and evolutionary breakpoints across the species included. CONCLUSION: The gene-anchored high-resolution RH map (1 locus/300 kb) for the targeted region of BTA6 presented here will provide a valuable platform to guide high-quality assembling and annotation of the currently existing bovine genome sequence draft to establish the final architecture of BTA6. Hence, a sequence-based map will provide a key resource to facilitate prospective continued efforts for the selection and validation of relevant positional and functional candidates underlying QTL for milk production and growth-related traits mapped on BTA6 and on similar chromosomal regions from evolutionary closely related species like sheep and goat. Furthermore, the high-resolution sequence-referenced BTA6 map will enable precise identification of multi-species conserved chromosome segments and evolutionary breakpoints in mammalian phylogenetic studies.


Subject(s)
Cattle/genetics , Quantitative Trait Loci , Radiation Hybrid Mapping , Animals , Body Composition/genetics , Cattle/growth & development , Chromosomes, Mammalian , Contig Mapping , Gene Order , Genomics , Milk , Synteny
19.
J Occup Environ Med ; 48(3): 326-33, 2006 Mar.
Article in English | MEDLINE | ID: mdl-16531838

ABSTRACT

OBJECTIVE: We sought to analyze the associations between work-time organization, psychosocial factors at work, and musculoskeletal pain of the neck, shoulders, and wrists and hands among administrative employees. METHODS: We analyzed the pain felt in a population of 762 employees during the 7 days before the survey at any of the three sites studied (multiple logistic regression). RESULTS: We found no associations between work-time organization and neck or shoulder pain. Wrist and hand pain increased with irregular schedule (odds ratio "OR" = 2.01; 95% confidence interval "95% CI" = 1.19-3.41) and lack of advance (at least 8 days) notice of schedule (OR = 1.90; 95% CI = 1.03-3.50). Of the psychosocial factors, only high psychological demand was associated with a significant increase in the prevalence of pain, in the neck and the shoulders (respectively: OR = 1.86, 95% CI = 1.23-2.82; OR = 1.88, 95% CI = 1.17-3.03). CONCLUSION: Prevention by improved psychosocial constraints at work must continue.


Subject(s)
Musculoskeletal Diseases/etiology , Occupational Diseases/etiology , Pain/etiology , Personnel Staffing and Scheduling , Stress, Psychological/complications , Adult , Cohort Studies , Female , France/epidemiology , Hand , Humans , Logistic Models , Male , Middle Aged , Multivariate Analysis , Musculoskeletal Diseases/epidemiology , Musculoskeletal Diseases/psychology , Neck Pain/epidemiology , Neck Pain/etiology , Neck Pain/psychology , Occupational Diseases/epidemiology , Occupational Diseases/psychology , Occupations , Pain/epidemiology , Pain/psychology , Prevalence , Shoulder Pain/epidemiology , Shoulder Pain/etiology , Shoulder Pain/psychology , Wrist Joint
20.
Naturwissenschaften ; 90(11): 524-7, 2003 Nov.
Article in English | MEDLINE | ID: mdl-14610652

ABSTRACT

Several species of Doryphorina leaf beetles from Central- and South America produce oleanane triterpene glycosides in their defensive glands. The presence of pentacyclic triterpenes in insects is intriguing since they lack the key enzymes necessary to synthesize these compounds. Since beta-amyrin is a common constituent of leaf waxes, we hypothesized that these leaf beetles use this compound as a precursor to their oleanane glycosides. To test this hypothesis we first confirmed the presence of beta-amyrin in Ipomoea batatas, the food plant of Platyphora kollari. Next, adults of P. kollari were fed for 10 days with I. batatas leaf disks painted with a solution of [2,2,3-(2)H(3)]beta-amyrin ([2,2,3-(2)H(3)]-1). The secretion from their defensive glands was collected and analyzed by HPLC-ESIMS. The results demonstrated that the secretion of beetles fed with an amount of [2,2,3-(2)H(3)]beta-amyrin corresponding to the quantity of unlabeled (natural) beta-amyrin present in the leaf disks contained on average 5.1% of [2,2,3-(2)H(3)]-3- O-beta- d-glucopyranosyl-(1-->4)-beta- d-glucuronopyranosyl-hederagenin ([2,2,3-(2)H(3)]-2), whereas the secretions of beetles fed with 10 times this amount of [2,2,3-(2)H(3)]beta-amyrin contained on average 23.9% of [2,2,3-(2)H(3)]-2. In both series of experiments, the percentage of labeled versus unlabeled triterpene glycoside in the secretion was positively correlated with the amount of deuterated beta-amyrin ingested. These results demonstrate for the first time that some leaf beetles are able to metabolize a widespread triterpenic constituent of leaf wax into more complex glycosides that are stored in their defensive glands.


Subject(s)
Asteraceae/parasitology , Coleoptera/physiology , Oleanolic Acid/analogs & derivatives , Oleanolic Acid/metabolism , Plant Leaves/parasitology , Triterpenes/metabolism , Waxes/metabolism , Animals , Saponins/biosynthesis , Saponins/metabolism
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