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1.
Ecol Evol ; 13(5): e10041, 2023 May.
Article in English | MEDLINE | ID: mdl-37153013

ABSTRACT

Microplastics are a globally pervasive pollutant with the potential to directly impact species and accumulate in ecosystems. However, there remains a relative paucity of research addressing their accumulation in freshwater ecosystems and a near absence of work in crayfish, despite their high ecological and economic importance. This study investigated the presence of microplastics in the invasive signal crayfish Pacifastacus leniusculus along a stream urbanization gradient. The results demonstrate a ubiquitous presence of microplastics in crayfish digestive tracts at all sites and provide the first evidence of microplastic accumulation in tail tissue. Evidence of a positive linear trend was demonstrated between microplastic concentration in crayfish and upstream urban area size in generalized linear models. Evidence for a positive effect of the upstream urban area and a negative effect of crayfish length on microplastic concentrations in crayfish was demonstrated in multiple generalized linear regression models. Our results extend the current understanding of microplastics presence in freshwater ecosystems and demonstrate their presence in crayfish in the wild for the first time.

2.
J Anim Ecol ; 90(9): 2135-2146, 2021 09.
Article in English | MEDLINE | ID: mdl-34363703

ABSTRACT

Multidimensional analysis of community stability has recently emerged as an overarching approach to evaluating ecosystem response to disturbance. However, the approach has previously been applied only in experimental and modelling studies. We applied this concept to an 18-year time series (2000-2017) of macroinvertebrate community dynamics from a southeast Alaskan river to further develop and test the approach in relation to the effects of two extreme flood events occurring in 2005 (event 1) and 2014 (event 2). Five components of stability were calculated for pairs of pre- or post-event years. Individual components were tested for differences between pre- and post-event time periods. Stability components' pairwise correlations were assessed and ellipsoids of stability were developed for each time period and compared to a null model derived from the permuted dataset. Only one stability component demonstrated a significant difference between time periods. In contrast, 80% of moderate and significant correlations between stability components were degraded post-disturbance and significant changes to the form of stability ellipsoids were observed. Ellipsoids of stability for all periods after the initial disturbance (2005) were not different to the null model. Our results illustrate that the dimensionality of stability approach can be applied to natural ecosystem time-series data. The major increase in dimensionality of stability observed following disturbance potentially indicates significant shifts in the processes which drive stability following disturbance. This evidence improves our understanding of community response beyond what is possible through analysis of individual stability components.


Subject(s)
Ecosystem , Rivers , Animals , Floods , Invertebrates
3.
Haemophilia ; 23(6): 844-851, 2017 Nov.
Article in English | MEDLINE | ID: mdl-28984010

ABSTRACT

INTRODUCTION: Varying initial doses of activated eptacog beta (recombinant human FVIIa, rhFVIIa) may provide therapeutic options when treating bleeding in patients with congenital haemophilia who have developed inhibitory antibodies to factor VIII (FVIII) or factor IX (FIX). This study evaluated escalated doses of a new rhFVIIa product as a prelude to selecting the doses for clinical efficacy evaluation in haemophilia patients. AIM: To assess the safety, pharmacokinetics, and laboratory pharmacodynamics of 3 doses of rhFVIIa in non-bleeding patients with congenital haemophilia A or B with or without inhibitors. METHODS: Adult male patients (18-75 years old) with congenital haemophilia A or B (with or without inhibitors) received infusions of rhFVIIa at doses of 25, 75 or 225 µg/kg body weight. Ten patients were treated at each dose level, and each patient received 2 different dose levels. Descriptive methods were used to analyse the data. RESULTS: Administration of rhFVIIa at all doses was well tolerated. Pharmacokinetic analyses showed that peak FVIIa plasma levels (Cmax ) were approximately proportional to dose and correlated well with peak thrombin generation. Total AUC0-inf also was approximately dose proportional. Clot formation and duration correlated with FVIIa activity. Repeat doses did not produce an immunological response. CONCLUSION: In the first dose-escalation study of rhFVIIa to support product registration, eptacog beta at doses of 25, 75, and 225 µg/kg was pharmacodynamically active and well tolerated in non-bleeding patients with congenital haemophilia A or B.


Subject(s)
Factor VIIa/therapeutic use , Hemophilia A/drug therapy , Hemophilia B/drug therapy , Recombinant Proteins/therapeutic use , Adult , Area Under Curve , Dizziness/chemically induced , Dose-Response Relationship, Drug , Factor VIIa/adverse effects , Factor VIIa/pharmacokinetics , Headache/chemically induced , Hemophilia A/metabolism , Hemophilia B/metabolism , Humans , Male , Metabolic Clearance Rate , Middle Aged , Recombinant Proteins/adverse effects , Recombinant Proteins/pharmacokinetics , Young Adult
4.
Philos Trans R Soc Lond B Biol Sci ; 372(1733)2017 Nov 05.
Article in English | MEDLINE | ID: mdl-28947659

ABSTRACT

XIST RNA triggers the transformation of an active X chromosome into a condensed, inactive Barr body and therefore provides a unique window into transitions of higher-order chromosome architecture. Despite recent progress, how XIST RNA localizes and interacts with the X chromosome remains poorly understood. Genetic engineering of XIST into a trisomic autosome demonstrates remarkable capacity of XIST RNA to localize and comprehensively silence that autosome. Thus, XIST does not require X chromosome-specific sequences but operates on mechanisms available genome-wide. Prior results suggested XIST localization is controlled by attachment to the insoluble nuclear scaffold. Our recent work affirms that scaffold attachment factor A (SAF-A) is involved in anchoring XIST, but argues against the view that SAF-A provides a unimolecular bridge between RNA and the chromosome. Rather, we suggest that a complex meshwork of architectural proteins interact with XIST RNA. Parallel work studying the territory of actively transcribed chromosomes suggests that repeat-rich RNA 'coats' euchromatin and may impact chromosome architecture in a manner opposite of XIST A model is discussed whereby RNA may not just recruit histone modifications, but more directly impact higher-order chromatin condensation via interaction with architectural proteins of the nucleus.This article is part of the themed issue 'X-chromosome inactivation: a tribute to Mary Lyon'.


Subject(s)
Chromatin/metabolism , Chromosomes, Human, X/genetics , Heterogeneous-Nuclear Ribonucleoprotein U/metabolism , RNA, Long Noncoding/genetics , X Chromosome Inactivation/genetics , Animals , Humans , Mice , X Chromosome/genetics
5.
Haemophilia ; 23(6): 832-843, 2017 Nov.
Article in English | MEDLINE | ID: mdl-28776894

ABSTRACT

INTRODUCTION: Haemophilia A or B patients with inhibitors have been treated with FVIIa-containing bypassing agents for over 20 years. However, due to uncertainty regarding dose response and thrombotic risk, the use of a gradual, titrated, minimal dosing strategy remains prevalent, potentially hampering early haemostasis. AIM: Evaluate the dose-dependent efficacy, safety and immunogenicity of activated eptacog beta (rhFVIIa), a new recombinant inhibitor bypassing agent for the treatment of bleeding episodes (BEs). METHODS: A Phase 3, randomized, cross-over study of initial dose regimens (IDRs) in 27 bleeding congenital haemophilia A or B subjects with inhibitors was conducted to evaluate on-demand treatment of mild/moderate BEs. Intravenous 75 µg/kg or 225 µg/kg initial doses with 75 µg/kg subsequent doses by schedule were administered until clinical response. RESULTS: The primary endpoint was sustained clinical response within 12 hours, determined by a composite of objective and pain measures. In the 75 µg/kg IDR, 84.9% (95% CI; 74.0%, 95.7%) of mild/moderate BEs at 12 hours were successfully treated compared to 93.2% (95% CI; 88.1%, 98.3%) treated in the 225 µg/kg IDR. Efficacy between the IDRs was statistically different (P<.020) in mild/moderate bleeding episodes. Both IDRs were well tolerated with no detectable immunogenic or thrombotic responses to rhFVIIa or host cell proteins. CONCLUSION: The dose-dependent efficacy seen in this study supports individualizing the initial dose of eptacog beta to optimize clinical response. By reducing uncertainty, the PERSEPT 1 results should increase the adoption of early haemostasis as a treatment goal for clinicians who treat haemorrhage in the inhibitor population.


Subject(s)
Factor VIIa/therapeutic use , Hemophilia A/drug therapy , Hemophilia B/drug therapy , Hemorrhage/drug therapy , Recombinant Proteins/therapeutic use , Adolescent , Adult , Cross-Over Studies , Dose-Response Relationship, Drug , Factor VIIa/administration & dosage , Factor VIIa/adverse effects , Headache/chemically induced , Hemarthrosis/chemically induced , Humans , Male , Middle Aged , Prospective Studies , Recombinant Proteins/administration & dosage , Recombinant Proteins/adverse effects , Young Adult
6.
Article in English | MEDLINE | ID: mdl-21447818

ABSTRACT

XIST RNA paints and induces silencing of one X chromosome in mammalian female cells, providing a powerful model to investigate long-range chromosomal regulation. This chapter focuses on events downstream from the spread of XIST RNA across the interphase chromosome, to consider how this large noncoding RNA interacts with and silences a whole chromosome. Several lines of evidence are summarized that point to the involvement of repeat sequences in different aspects of the X-inactivation process. Although the "repeat genome" comprises close to half of the human genome, the potential for abundant repeats to contribute to genome regulation has been largely overlooked and may be underestimated. X inactivation has the potential to reveal roles of interspersed and other repeats in the genome. For example, evidence indicates that XIST RNA acts at the architectural level of the whole chromosome to induce formation of a silent core enriched for nongenic and repetitive (Cot-1) DNA, which corresponds to the DAPI-dense Barr body. Expression of repeat RNAs may contribute to chromosome remodeling, and evidence suggests that other types of repeat elements may be involved in escape from X inactivation. Despite great progress in decoding the rest of the genome, we suggest that the repeat genome may contain meaningful but complex language that remains to be better studied and understood.


Subject(s)
Chromosomes, Human, X/genetics , Genome, Human/genetics , RNA, Untranslated/metabolism , Repetitive Sequences, Nucleic Acid/genetics , X Chromosome Inactivation/genetics , Gene Silencing , Humans , RNA, Long Noncoding
7.
Diabet Med ; 20(6): 455-61, 2003 Jun.
Article in English | MEDLINE | ID: mdl-12786679

ABSTRACT

OBJECTIVE: The objective of this study was to investigate the association of lipoprotein(a) [Lp(a)] levels with intimal medial thickness (IMT) in Type 2 diabetic patients in south India. STUDY DESIGN: We studied 587 consecutive Type 2 diabetic patients at the M.V. Diabetes Specialities Centre, Chennai. The mean age of the study group was 55 +/- 10 years and 71.2% were males. IMT of the right common carotid artery was determined using high-resolution B mode ultrasonography. Lp(a) levels were measured using ELISA. Since the frequency distribution of Lp(a) was skewed, Lp(a) values were log transformed and the geometric mean was used for statistical analysis. The tertiles of IMT were determined to analyse the association of Lp(a) and other factors with IMT. RESULT: The mean Lp(a) level in the study patients was 18.9 +/- 3.1 mg/dl (geometric mean +/- sd) and the mean IMT of the study subjects was 0.93 +/- 0.19 mm (mean +/- sd). The prevalence of carotid atherosclerosis (defined as IMT > 1.1 mm) among subjects with elevated Lp(a) levels > 20 mg/dl was significantly higher compared with those with Lp(a) levels

Subject(s)
Carotid Artery Diseases/pathology , Carotid Artery, Common/pathology , Diabetes Mellitus, Type 2/pathology , Diabetic Angiopathies/pathology , Lipoprotein(a)/analysis , Age Factors , Aged , Blood Pressure , Carotid Artery Diseases/epidemiology , Carotid Artery Diseases/metabolism , Cholesterol, HDL/blood , Cholesterol, LDL/blood , Diabetes Mellitus, Type 2/epidemiology , Diabetes Mellitus, Type 2/metabolism , Diabetic Angiopathies/epidemiology , Diabetic Angiopathies/metabolism , Enzyme-Linked Immunosorbent Assay/methods , Female , Hemoglobin A/analysis , Humans , India/epidemiology , Male , Middle Aged , Prevalence , Time Factors
8.
Cytogenet Genome Res ; 99(1-4): 92-8, 2002.
Article in English | MEDLINE | ID: mdl-12900550

ABSTRACT

XIST encodes a functional RNA that is expressed exclusively from the inactive X in female mammals and is required for the silencing of most of the genes on the chromosome. XIST transcripts remain in the nucleus, and their specific localization to the inactive X is important for silencing; however, it is not known how these transcripts localize to the inactive X chromosome. Expression of mouse and human XIST from ectopic sites has suggested that localization to the chromosome from which the gene is expressed may be dependent upon either the copy number of the integrated constructs or the level of ectopic XIST expression. To further examine the behavior of XIST transgenes when expressed from ectopic sites, we introduced an XIST-containing PAC into the human male somatic cell line HT-1080. In five different transformant clones, the degree of localization and associated DNA condensation of the surrounding chromatin varied within nuclei of the same clone, as well as among different clones. Comparing the number of integrated transgenes and the levels of XIST expression revealed that neither factor was sufficient for a tight localization of the XIST signal. Therefore, the extent of expression and localization of XIST transcripts from ectopic transgenes is likely dependent upon many interacting factors, including the number of integrated transgenes, the level of XIST expression, and the site of integration.


Subject(s)
RNA, Untranslated/genetics , RNA/metabolism , Gene Expression , Genetic Vectors/genetics , Humans , In Situ Hybridization, Fluorescence/methods , Male , RNA/genetics , RNA, Long Noncoding , RNA, Untranslated/metabolism , Transcription, Genetic , Transfection , Tumor Cells, Cultured
9.
Leuk Lymphoma ; 41(1-2): 67-76, 2001 Mar.
Article in English | MEDLINE | ID: mdl-11342358

ABSTRACT

The 20 x 10(9) /L threshold for prophylactic platelet transfusion may be unnecessarily high. Few prospective studies, however, in which other trigger values were tested have been published. In this study all hospitalized, thrombocytopenic adult hematology-oncology patients in our institution were prospectively evaluated daily for hemorrhage and platelet transfusion during a one year period; no patients were excluded for bleeding or infectious problems. By design, during the initial six-months (baseline period), the prophylactic platelet transfusion trigger was 20 x 10(9) /L; for the second six-months (study period) this threshold was changed to 10 x 10(9) /L. Patients studied during the two periods did not differ significantly in age, gender, diagnosis, blood or marrow transplant status, and duration of neutropenia. Compliance with the thresholds was 95.6% (baseline period) and 93.5% (study period). For patients with platelet counts under 20 x 10(9) /L, the mean use of platelet transfusions per patient per day was significantly lower in the study period (4.47) than in the baseline period (6.48; p<0.001). Both mean prophylactic (1.54/patient-day) and therapeutic (2.93/patient-day) platelet transfusions were reduced in the study period compared with the baseline period (2.26 and 4.22/patient-day, respectively). Hemorrhage was slightly reduced in the study period compared with the baseline period: major hemorrhage, 15.2% vs. 18.4% (p=0.014); minor hemorrhage, 63.6% vs. 70.1% (p<0.001). Thus, hemorrhage was not increased with the lower trigger level. A 10 x 10(9) /L prophylactic platelet transfusion threshold value is safe and effective.


Subject(s)
Platelet Transfusion/standards , Adult , Aged , Analysis of Variance , Bone Marrow Transplantation , Female , Hemorrhage/etiology , Hemorrhage/prevention & control , Hemorrhage/therapy , Humans , Leukemia/complications , Leukemia/therapy , Lymphoma/complications , Lymphoma/therapy , Male , Middle Aged , Platelet Count , Platelet Transfusion/adverse effects , Prospective Studies , Risk Factors , Thrombocytopenia/prevention & control
10.
Mol Biol Cell ; 12(3): 565-76, 2001 Mar.
Article in English | MEDLINE | ID: mdl-11251071

ABSTRACT

Interactions between Cajal bodies (CBs) and replication-dependent histone loci occur more frequently than for other mRNA-encoding genes, but such interactions are not seen with all alleles at a given time. Because CBs contain factors required for transcriptional regulation and 3' end processing of nonpolyadenylated replication-dependent histone transcripts, we investigated whether interaction with CBs is related to metabolism of these transcripts, known to vary during the cell cycle. Our experiments revealed that a locus containing a cell cycle-independent, replacement histone gene that produces polyadenylated transcripts does not preferentially associate with CBs. Furthermore, modest but significant changes in association levels of CBs with replication-dependent histone loci mimic their cell cycle modulations in transcription and 3' end processing rates. By simultaneously visualizing replication-dependent histone genes and their nuclear transcripts for the first time, we surprisingly find that the vast majority of loci producing detectable RNA foci do not contact CBs. These studies suggest some link between CB association and unusual features of replication-dependent histone gene expression. However, sustained CB contact is not a requirement for their expression, consistent with our observations of U7 snRNP distributions. The modest correlation to gene expression instead may reflect transient gene signaling or the nucleation of small CBs at gene loci.


Subject(s)
Coiled Bodies/genetics , Coiled Bodies/metabolism , Histones/genetics , Cell Division , Gene Expression , Genetic Variation , HeLa Cells , Humans , In Situ Hybridization, Fluorescence , RNA, Messenger/genetics , RNA, Messenger/metabolism , RNA, Small Nuclear/genetics , RNA, Small Nuclear/metabolism
11.
Mol Biol Cell ; 11(9): 2987-98, 2000 Sep.
Article in English | MEDLINE | ID: mdl-10982395

ABSTRACT

The Cajal (coiled) body (CB) is a structure enriched in proteins involved in mRNA, rRNA, and snRNA metabolism. CBs have been shown to interact with specific histone and snRNA gene loci. To examine the potential role of CBs in U2 snRNA metabolism, we used a variety of genomic and oligonucleotide probes to visualize in situ newly synthesized U2 snRNA relative to U2 loci and CBs. Results demonstrate that long spacer sequences between U2 coding repeats are transcribed, supporting other recent evidence that U2 transcription proceeds past the 3' box. The presence of bright foci of this U2 locus RNA differed between alleles within the same nucleus; however, this did not correlate with the loci's association with a CB. Experiments with specific oligonucleotide probes revealed signal for preU2 RNA within CBs. PreU2 was also detected in the locus-associated RNA foci, whereas sequences 3' of preU2 were found only in these foci, not in CBs. This suggests that a longer primary transcript is processed before entry into CBs. Although this work shows that direct contact of a U2 locus with a CB is not simply correlated with RNA at that locus, it provides the first evidence of new preU2 transcripts within CBs. We also show that, in contrast to CBs, SMN gems do not associate with U2 gene loci and do not contain preU2. Because other evidence indicates that preU2 is processed in the cytoplasm before assembly into snRNPs, results point to an involvement of CBs in modification or transport of preU2 RNA.


Subject(s)
Cell Nucleus/physiology , Coiled Bodies/physiology , RNA Precursors/genetics , RNA, Small Nuclear/genetics , Transcription, Genetic , 3' Untranslated Regions/genetics , Base Sequence , Cell Nucleus/genetics , Coiled Bodies/genetics , HeLa Cells , Humans , In Situ Hybridization, Fluorescence , Molecular Sequence Data
12.
Mamm Genome ; 11(9): 767-73, 2000 Sep.
Article in English | MEDLINE | ID: mdl-10967136

ABSTRACT

We previously identified ps20 protein as a secreted growth inhibitor and purified the protein from fetal rat prostate urogenital sinus mesenchymal cell conditioned medium. The rat cDNA was subsequently cloned, and ps20 was found to contain a WAP-type four-disulfide core motif, indicating it may function as a protease inhibitor. We now report cloning and characterization of the mouse ps20 gene (designated Wfdc1), the human homolog cDNA, and the human gene (designated WFDC1). Both the mouse and human WFDC1 genes consist of seven exons and encode respective ps20 proteins sharing 79.1% identity and nearly identical WAP motifs in exon 2. The WFDC1 gene was mapped by FISH analysis to human Chromosome (Chr) 16q24, an area of frequent loss of heterozygosity (LOH) previously identified in multiple cancers including prostate, breast, hepatocellular, and Wilms' tumor. Identification and characterization of the WFDC1 gene may aid in better understanding the potential role of this gene and ps20 in prostate biology and carcinogenesis.


Subject(s)
Chromosomes, Human, Pair 16/genetics , Loss of Heterozygosity , Neoplasms/genetics , Proteins/genetics , Amino Acid Sequence , Animals , Base Sequence , Chromosome Banding , Chromosome Mapping , Cloning, Molecular , DNA/chemistry , DNA/genetics , DNA, Complementary/chemistry , DNA, Complementary/genetics , Exons , Genes/genetics , Humans , In Situ Hybridization, Fluorescence , Introns , Male , Mice , Mice, Inbred Strains , Molecular Sequence Data , Sequence Alignment , Sequence Analysis, DNA , Sequence Homology, Amino Acid
13.
J Cell Biol ; 150(3): 417-32, 2000 Aug 07.
Article in English | MEDLINE | ID: mdl-10931857

ABSTRACT

This study illuminates the intra-nuclear fate of COL1A1 RNA in osteogenesis imperfecta (OI) Type I. Patient fibroblasts were shown to carry a heterozygous defect in splicing of intron 26, blocking mRNA export. Both the normal and mutant allele associated with a nuclear RNA track, a localized accumulation of posttranscriptional RNA emanating to one side of the gene. Both tracks had slightly elongated or globular morphology, but mutant tracks were cytologically distinct in that they lacked the normal polar distribution of intron 26. Normal COL1A1 RNA tracks distribute throughout an SC-35 domain, from the gene at the periphery. Normally, almost all 50 COL1A1 introns are spliced at or adjacent to the gene, before mRNA transits thru the domain. Normal COL1A1 transcripts may undergo maturation needed for export within the domain such as removal of a slow-splicing intron (shown for intron 24), after which they may disperse. Splice-defective transcripts still distribute thru the SC-35 domain, moving approximately 1-3 micrometer from the gene. However, microfluorimetric analyses demonstrate mutant transcripts accumulate to abnormal levels within the track and domain. Hence, mutant transcripts initiate transport from the gene, but are impeded in exit from the SC-35 domain. This identifies a previously undefined step in mRNA export, involving movement through an SC-35 domain. A model is presented in which maturation and release for export of COL1A1 mRNA is linked to rapid cycling of metabolic complexes within the splicing factor domain, adjacent to the gene. This paradigm may apply to SC-35 domains more generally, which we suggest may be nucleated at sites of high demand and comprise factors being actively used to facilitate expression of associated loci.


Subject(s)
Collagen/genetics , Nuclear Proteins/metabolism , Osteogenesis Imperfecta/genetics , RNA Precursors/genetics , RNA Splicing , RNA, Messenger/genetics , Ribonucleoproteins , Adolescent , Biological Transport , Cell Nucleus/ultrastructure , Child , Female , Gene Expression , Humans , In Situ Hybridization, Fluorescence , Introns , Male , Models, Genetic , Mutation , RNA Precursors/isolation & purification , RNA Precursors/metabolism , RNA, Messenger/isolation & purification , RNA, Messenger/metabolism , Serine-Arginine Splicing Factors
15.
Croat Med J ; 40(4): 528-32, 1999 Dec.
Article in English | MEDLINE | ID: mdl-10554355

ABSTRACT

AIM: To analyze the influence of the premature termination codon on mRNA transport and stability METHODS: Chondrocyte mRNA was isolated from homozygous and heterozygous nanomelic 17-days old embryos and examined by RT-PCR analysis. To analyze aggrecan mRNA stability, mRNA synthesis was inhibited with DRB [5,6 dichloro-1-(-D-ribofuranosyl benzimidazole)], a specific inhibitor of RNA polymerase II. Visualization of the aggrecan alleles was performed by in situ hybridization. RESULTS: The level of mutant aggrecan mRNA within the nucleus was equal to that of the control, but no mutant mRNA was observed in the cytoplasm. RT-PCR revealed that the mutant transcript was only detectable in the nucleus, compared with house-keeping glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene or collagen type II. A restriction site induced by premature termination codon TAA allowed the distinction of normal and mutant transcripts in chondrocytes derived from embryos heterozygous for the nanomelic mutation. After the treatment with DRB, identical decay rates were demonstrated for both transcripts within the heterozygous nucleus. In situ hybridization showed no abnormal mRNA accumulation. CONCLUSION: This is the first evidence suggesting that the transcript of the mRNA with the premature termination codon within an exon does exit the nucleus.


Subject(s)
Cartilage Diseases/genetics , Cartilage/metabolism , Chondroitin Sulfate Proteoglycans/genetics , Codon, Terminator/genetics , Extracellular Matrix Proteins , Protein Biosynthesis/genetics , Proteoglycans/genetics , RNA, Messenger/metabolism , Aggrecans , Animals , Cartilage/embryology , Cartilage Diseases/drug therapy , Cartilage Diseases/metabolism , Cell Culture Techniques , Chick Embryo , Chondrocytes/cytology , Chondrocytes/metabolism , Chondroitin Sulfate Proteoglycans/drug effects , Dichlororibofuranosylbenzimidazole/pharmacology , Genotype , Lectins, C-Type , Mutation , Nucleic Acid Synthesis Inhibitors/pharmacology , Proteoglycans/drug effects , RNA Polymerase II/antagonists & inhibitors , RNA, Messenger/drug effects , RNA, Messenger/genetics , Reverse Transcriptase Polymerase Chain Reaction
16.
Biol Reprod ; 61(4): 1083-9, 1999 Oct.
Article in English | MEDLINE | ID: mdl-10491647

ABSTRACT

PAPP-A/proMBP, the complex of pregnancy-associated plasma protein-A (PAPP-A) and the proform of eosinophil major basic protein (proMBP), circulates at increasing levels during pregnancy. The major site of synthesis is the placenta, in which PAPP-A mRNA has been localized to the syncytiotrophoblast and the placental X cells, whereas proMBP mRNA has been localized to the placental X cells only. The function of PAPP-A/proMBP and its components has remained speculative for years. Recently, however, it has been shown that PAPP-A specifically cleaves insulin-like growth factor (IGF) binding protein-4 in an IGF-dependent manner. Female reproductive and nonreproductive tissues have previously been reported to contain PAPP-A immunoreactivity, based on studies using preparations of anti(PAPP-A/proMBP), now known to recognize both PAPP-A and proMBP, and other irrelevant antigens. To analyze for the presence of PAPP-A and proMBP mRNA, a sensitive semiquantitative reverse transcription (RT) polymerase chain reaction (PCR) method was developed. Reverse-transcribed poly(A)(+) RNA was used as a template in a competitive PCR. PAPP-A and proMBP mRNA levels were normalized against the level of beta-actin mRNA. Both mRNA species were significantly more abundant in term placenta than in other tissues analyzed. All analyzed tissues, including endometrium, myometrium, colon, and kidney, contained both PAPP-A and proMBP mRNA.


Subject(s)
Blood Proteins/biosynthesis , Inflammation Mediators/metabolism , Pregnancy-Associated Plasma Protein-A/biosynthesis , RNA, Messenger/metabolism , Actins/biosynthesis , Actins/genetics , Eosinophil Granule Proteins , Eosinophils/metabolism , Female , Humans , Polymerase Chain Reaction , Pregnancy , Ribonucleases/metabolism
17.
Growth Horm IGF Res ; 9(1): 25-34, 1999 Feb.
Article in English | MEDLINE | ID: mdl-10207505

ABSTRACT

Insulin-like growth factors (IGFs) are one of the most potent stimulators of cell growth. IGFs are modulated by six high affinity binding proteins (IGFBPs) which are, in turn, regulated through post-translational modifications such as proteolysis. In the conditioned media of human fibroblasts, IGFBP-4 is cleaved by an apparently novel IGFBP-4-specific protease that requires IGF for functional activity. We have used several biochemical manipulations, including size exclusion chromatography, native gel electrophoresis, chaotropic salt precipitation, hydrophobic interaction chromatography, ion exchange chromatography, isoelectric focusing, lectin affinity chromatography, and metal chelating affinity chromatography to both characterize and partially purify the IGF-dependent IGFBP-4 protease. Our results indicate that this protease is a highly glycosylated, Zn+2 binding metalloprotease with a native molecular weight greater than 200 kDa.


Subject(s)
Metalloendopeptidases/metabolism , Cell Line , Chromatography, Affinity , Chromatography, Gel , Chromatography, High Pressure Liquid , Chromatography, Ion Exchange , Culture Media, Conditioned , Electrophoresis, Polyacrylamide Gel , Enzyme Stability , Fibroblasts/cytology , Fibroblasts/enzymology , Humans , Insulin-Like Growth Factor Binding Protein 4/metabolism , Kinetics , Metalloendopeptidases/chemistry , Metalloendopeptidases/isolation & purification , Molecular Weight , Pregnancy-Associated Plasma Protein-A , Substrate Specificity , Zinc/metabolism
18.
Proc Natl Acad Sci U S A ; 96(6): 3149-53, 1999 Mar 16.
Article in English | MEDLINE | ID: mdl-10077652

ABSTRACT

Proteolytic cleavage of the six known insulin-like growth factor binding proteins (IGFBPs) is a powerful means of rapid structure and function modification of these important growth-regulatory proteins. Intact IGFBP-4 is a potent inhibitor of IGF action in vitro, and cleavage of IGFBP-4 has been shown to abolish its ability to inhibit IGF stimulatory effects in a variety of systems, suggesting that IGFBP-4 proteolysis acts as a positive regulator of IGF bioavailability. Here we report the isolation of an IGF-dependent IGFBP-4-specific protease from human fibroblast-conditioned media and its identification by mass spectrometry microsequencing as pregnancy-associated plasma protein-A (PAPP-A), a protein of unknown function found in high concentrations in the maternal circulation during pregnancy. Antibodies raised against PAPP-A both inhibited and immunodepleted IGFBP-4 protease activity in human fibroblast-conditioned media. Moreover, PAPP-A purified from pregnancy sera had IGF-dependent IGFBP-4 protease activity. PAPP-A mRNA was expressed by the human fibroblasts and osteoblasts, and PAPP-A protein was secreted into the culture medium. In conclusion, we have identified an IGF-dependent IGFBP protease and at the same time assigned a function to PAPP-A. This represents an unanticipated union of two areas of research that were not linked in any way before this report.


Subject(s)
Fibroblasts/metabolism , Insulin-Like Growth Factor Binding Protein 4/metabolism , Metalloendopeptidases/genetics , Metalloendopeptidases/isolation & purification , Pregnancy-Associated Plasma Protein-A/genetics , Amino Acid Sequence , Female , Humans , Insulin-Like Growth Factor I/metabolism , Insulin-Like Growth Factor II/metabolism , Male , Mass Spectrometry , Metalloendopeptidases/chemistry , Metalloendopeptidases/metabolism , Molecular Sequence Data , Pregnancy , Pregnancy-Associated Plasma Protein-A/chemistry , Sequence Analysis
19.
J Cell Biol ; 144(4): 617-29, 1999 Feb 22.
Article in English | MEDLINE | ID: mdl-10037785

ABSTRACT

Analysis of six endogenous pre-mRNAs demonstrates that localization at the periphery or within splicing factor-rich (SC-35) domains is not restricted to a few unusually abundant pre-mRNAs, but is apparently a more common paradigm of many protein-coding genes. Different genes are preferentially transcribed and their RNAs processed in different compartments relative to SC-35 domains. These differences do not simply correlate with the complexity, nuclear abundance, or position within overall nuclear space. The distribution of spliceosome assembly factor SC-35 did not simply mirror the distribution of individual pre-mRNAs, but rather suggested that individual domains contain both specific pre-mRNA(s) as well as excess splicing factors. This is consistent with a multifunctional compartment, to which some gene loci and their RNAs have access and others do not. Despite similar molar abundance in muscle fiber nuclei, nascent transcript "trees" of highly complex dystrophin RNA are cotranscriptionally spliced outside of SC-35 domains, whereas posttranscriptional "tracks" of more mature myosin heavy chain transcripts overlap domains. Further analyses supported that endogenous pre-mRNAs exhibit distinct structural organization that may reflect not only the expression and complexity of the gene, but also constraints of its chromosomal context and kinetics of its RNA metabolism.


Subject(s)
Nuclear Proteins/metabolism , RNA Precursors/genetics , RNA Precursors/metabolism , Ribonucleoproteins , Cell Line , Dystrophin/genetics , Humans , In Situ Hybridization, Fluorescence , Myosin Heavy Chains/genetics , RNA Processing, Post-Transcriptional , RNA Splicing , RNA, Messenger/genetics , RNA, Messenger/metabolism , Serine-Arginine Splicing Factors , Spliceosomes/metabolism , Transcription, Genetic
20.
Genomics ; 52(3): 342-51, 1998 Sep 15.
Article in English | MEDLINE | ID: mdl-9867483

ABSTRACT

Supervillin is a 205-kDa F-actin binding protein originally isolated from bovine neutrophils. This protein is tightly associated with both actin filaments and plasma membranes, suggesting that it forms a high-affinity link between the actin cytoskeleton and the membrane. Human supervillin cDNAs cloned from normal human kidney and from the cervical carcinoma HeLa S3 predict a bipartite structure with three potential nuclear localization signals in the NH2-terminus and three potential actin-binding sequences in the COOH-terminus. In fact, throughout its length, the COOH-terminal half of supervillin is similar to segments 2-6 plus the COOH-terminal "headpiece" of villin, an actin-binding protein in intestinal microvilli. A comparison of the bovine and human sequences indicates that supervillin is highly conserved at the amino acid level, with 79.2% identity of the NH2-terminus and conservation of three of the four nuclear localization signals found in bovine supervillin. The COOH-terminus is even more conserved, with 95.1% amino acid identity overall and 100% conservation of the villin-like headpiece. Supervillin mRNAs are expressed in all human tissue tested, bu are most abundant in muscle, bone marrow, thyroid gland, and salivary gland; comparatively little message is found in brain. Human supervillin mRNA is approximately 7.5 kb; this message is especially abundant in HeLa S3 cervical carcinoma, SW480 adenocarcinoma, and A549 lung carcinoma cell lines. The human supervillin gene (SVIL) is localized to a single chromosomal locus at 10p11.2, a region that is deleted in some prostate tumors.


Subject(s)
Membrane Proteins/genetics , Microfilament Proteins/genetics , Amino Acid Sequence , Animals , Base Sequence , Cattle , Cell Line , Chromosome Mapping , Chromosomes, Human, Pair 10/genetics , Cloning, Molecular , Conserved Sequence , Gene Expression Regulation, Neoplastic/genetics , Humans , In Situ Hybridization, Fluorescence , Molecular Sequence Data , Nuclear Localization Signals/genetics , RNA, Messenger/metabolism , Sequence Analysis, DNA , Tumor Cells, Cultured
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