GC4S: A bioinformatics-oriented Java software library of reusable graphical user interface components.

Modern bioinformatics and computational biology are fields of study driven by the availability of effective software required for conducting appropriate research tasks. Apart from providing reliable and fast implementations of different data analysis algorithms, these software applications should also be clear and easy to use through proper user interfaces, providing appropriate data management and visualization capabilities. In this regard, the user experience obtained by interacting with these applications via their Graphical User Interfaces (GUI) is a key factor for their final success and real utility for researchers. Despite the existence of different packages and applications focused on advanced data visualization, there is a lack of specific libraries providing pertinent GUI components able to help scientific bioinformatics software developers. To that end, this paper introduces GC4S, a bioinformatics-oriented collection of high-level, extensible, and reusable Java GUI elements specifically designed to speed up bioinformatics software development. Within GC4S, developers of new applications can focus on the specific GUI requirements of their projects, relying on GC4S for generalities and abstractions. GC4S is free software distributed under the terms of GNU Lesser General Public License and both source code and documentation are publicly available at http://www.sing-group.org/gc4s.

Active and Assisted Living Ecosystem for the Elderly.

A novel ecosystem to promote the physical, emotional and psychic health and well-being of the elderly is presented. Our proposal was designed to add several services developed to meet the needs of the senior population, namely services to improve social inclusion and increase contribution to society. Moreover, the solution monitors the vital signs of elderly individuals, as well as environmental parameters and behavior patterns, in order to seek eminent danger situations and predict potential hazardous issues, acting in accordance with the various alert levels specified for each individual. The platform was tested by seniors in a real scenario. The experimental results demonstrated that the proposed ecosystem was well accepted and is easy to use by seniors.

WARCProcessor: An Integrative Tool for Building and Management of Web Spam Corpora.

In this work we present the design and implementation of WARCProcessor, a novel multiplatform integrative tool aimed to build scientific datasets to facilitate experimentation in web spam research. The developed application allows the user to specify multiple criteria that change the way in which new corpora are generated whilst reducing the number of repetitive and error prone tasks related with existing corpus maintenance. For this goal, WARCProcessor supports up to six commonly used data sources for web spam research, being able to store output corpus in standard WARC format together with complementary metadata files. Additionally, the application facilitates the automatic and concurrent download of web sites from Internet, giving the possibility of configuring the deep of the links to be followed as well as the behaviour when redirected URLs appear. WARCProcessor supports both an interactive GUI interface and a command line utility for being executed in background.

A distributed multiagent system architecture for body area networks applied to healthcare monitoring.

In the last years the area of health monitoring has grown significantly, attracting the attention of both academia and commercial sectors. At the same time, the availability of new biomedical sensors and suitable network protocols has led to the appearance of a new generation of wireless sensor networks, the so-called wireless body area networks. Nowadays, these networks are routinely used for continuous monitoring of vital parameters, movement, and the surrounding environment of people, but the large volume of data generated in different locations represents a major obstacle for the appropriate design, development, and deployment of more elaborated intelligent systems. In this context, we present an open and distributed architecture based on a multiagent system for recognizing human movements, identifying human postures, and detecting harmful activities. The proposed system evolved from a single node for fall detection to a multisensor hardware solution capable of identifying unhampered falls and analyzing the users' movement. The experiments carried out contemplate two different scenarios and demonstrate the accuracy of our proposal as a real distributed movement monitoring and accident detection system. Moreover, we also characterize its performance, enabling future analyses and comparisons with similar approaches.

Using the eServices platform for detecting behavior patterns deviation in the elderly assisted living: a case study.

World's aging population is rising and the elderly are increasingly isolated socially and geographically. As a consequence, in many situations, they need assistance that is not granted in time. In this paper, we present a solution that follows the CRISP-DM methodology to detect the elderly's behavior pattern deviations that may indicate possible risk situations. To obtain these patterns, many variables are aggregated to ensure the alert system reliability and minimize eventual false positive alert situations. These variables comprehend information provided by body area network (BAN), by environment sensors, and also by the elderly's interaction in a service provider platform, called eServices--Elderly Support Service Platform. eServices is a scalable platform aggregating a service ecosystem developed specially for elderly people. This pattern recognition will further activate the adequate response. With the system evolution, it will learn to predict potential danger situations for a specified user, acting preventively and ensuring the elderly's safety and well-being. As the eServices platform is still in development, synthetic data, based on real data sample and empiric knowledge, is being used to populate the initial dataset. The presented work is a proof of concept of knowledge extraction using the eServices platform information. Regardless of not using real data, this work proves to be an asset, achieving a good performance in preventing alert situations.

Evaluating the effect of unbalanced data in biomedical document classification.

Nowadays, document classification has become an interesting research field. Partly, this is due to the increasing availability of biomedical information in digital form which is necessary to catalogue and organize. In this context, machine learning techniques are usually applied to text classification by using a general inductive process that automatically builds a text classifier from a set of pre-classified documents. Related with this domain, imbalanced data is a well-known problem in many practical applications of knowledge discovery and its effects on the performance of standard classifiers are remarkable. In this paper, we investigate the application of a Bayesian Network (BN) model for the triage of documents, which are represented by the association of different MeSH terms. Our results show that BNs are adequate for describing conditional independencies between MeSH terms and that MeSH ontology is a valuable resource for representing Medline documents at different abstraction levels. Moreover, we perform an extensive experimental evaluation to investigate if the classification of Medline documents using a BN classifier poses additional challenges when dealing with class-imbalanced prediction. The evaluation involves two methods, under-sampling and cost-sensitive learning. We conclude that BN classifier is sensitive to both balancing strategies and existing techniques can improve its overall performance.