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1.
Travel Med Infect Dis ; 42: 102084, 2021.
Article in English | MEDLINE | ID: mdl-34048935

ABSTRACT

BACKGROUND: The importation of SARS-CoV-2 through air travel poses substantial risks to generate new COVID-19 outbreaks. Timely contact tracing is particularly crucial to limit onwards transmission in settings without established community transmission. METHODS: We conducted an in-depth analysis of the response to a big flight-associated COVID-19 outbreak in Vietnam in March 2020 that involved contact tracing, systematic testing and strict quarantine up to third generation contacts. RESULTS: 183 primary contacts from the flight as well as 1000 secondary and 311 third generation contacts were traced, tested, and quarantined across 15 provinces across Vietnam. The protracted confirmation of the index case at 3 days and 19 h after arrival resulted in isolation/quarantine delays of 6.8 days (IQR 6.3-6.8) and 5.8 days (IQR 5.8-7.0) for primary and secondary cases, respectively, which generated 84.0 and 26.4 person-days of community exposure from primary and secondary cases, respectively. Nevertheless, only 5 secondary cases occurred. CONCLUSIONS: A large flight-related COVID-19 cluster was successfully contained through timely, systematic and comprehensive public health responses despite delayed index case identification. Multiagency collaboration and pre-established mechanisms are crucial for low and middle income countries like Vietnam to limit community transmission after COVID-19 importation through air travel.


Subject(s)
COVID-19 Testing , COVID-19/diagnosis , COVID-19/prevention & control , Contact Tracing , Disease Outbreaks/statistics & numerical data , Quarantine/legislation & jurisprudence , COVID-19/epidemiology , COVID-19/transmission , Federal Government , Humans , SARS-CoV-2/isolation & purification , Vietnam/epidemiology
2.
BMC Infect Dis ; 21(1): 393, 2021 Apr 28.
Article in English | MEDLINE | ID: mdl-33910507

ABSTRACT

BACKGROUND: International air travel plays an important role in the global spread of SARS-CoV-2, and tracing of close contacts is an integral part of the public health response to COVID-19. We aimed to assess the timeliness of contact tracing among airline passengers arriving in Vietnam on flights containing COVID-19 cases and investigated factors associated with timeliness of contact tracing. METHODS: We included data from 2228 passengers on 22 incoming flights between 2 and 19 March 2020. Contact tracing duration was assessed separately for the time between the date of index case confirmation and date of contact tracing initiation (interval I), and the date of contact tracing initiation and completion (interval II). We used log-rank tests and multivariable Poisson regression models to identify factors associated with timeliness. RESULTS: The median duration of interval I and interval II was one (IQR: 1-2) and 3 days (IQR: 2-5), respectively. The contact tracing duration was shorter for passengers from flights where the index case was identified through mandatory testing directly upon arrival (median = 4; IQR: 3-5) compared to flights with index case detection through self-presentation at health facilities after arrival (median = 7; IQR: 5-8) (p-value = 0.018). Cumulative hazards for successful tracing were higher for Vietnamese nationals compared to non-Vietnamese nationals (p < 0.001). CONCLUSIONS: Contact tracing among flight passengers in the early stage of the COVID-19 epidemic in Vietnam was timely though delays occurred on high workload days. Mandatory SARS-CoV-2 testing at arrival may reduce contact tracing duration and should be considered as an integrated screening tool for flight passengers from high-risk areas when entering low-transmission settings with limited contact tracing capacity. We recommend a standardized risk-based contact tracing approach for flight passengers during the ongoing COVID-19 epidemic.


Subject(s)
Air Travel/statistics & numerical data , COVID-19 Testing , COVID-19/diagnosis , COVID-19/transmission , Contact Tracing , SARS-CoV-2/isolation & purification , COVID-19/epidemiology , COVID-19/virology , Humans , SARS-CoV-2/genetics , Time Factors , Vietnam/epidemiology
3.
Western Pac Surveill Response J ; 10(1): 32-38, 2019.
Article in English | MEDLINE | ID: mdl-31110840

ABSTRACT

INTRODUCTION: There are two methods of reverse transcription polymerase chain reaction (RT-PCR) that have been the common methods to detect influenza infections: conventional and real-time RT-PCR. From December 2017 to March 2018, several missed diagnoses of influenza A(H1)pdm09 using real-time RT-PCR were reported in northern Viet Nam. This study investigated how these missed detections occurred to determine their effect on the surveillance of influenza. METHODS: The haemagglutinin (HA) segments of A(H1N1)pdm09 from both real-time RT-PCR positive and negative samples were isolated and sequenced. The primer and probe sets in the HA gene were checked for mismatches, and phylogenetic analyses were performed to determine the molecular epidemiology of these viruses. RESULTS: There were 86 positive influenza A samples; 32 were A(H1)pdm09 positive by conventional RT-PCR but were negative by real-time RT-PCR. Sequencing was conducted on 23 influenza (H1N1)pdm09 isolates that were recovered from positive samples. Eight of these were negative for A(H1)pdm09 by real-time RT-PCR. There were two different mismatches in the probe target sites of the HA gene sequences of all isolates (n = 23) with additional mismatches only at position 7 (template binding site) identified for all eight negative real-time RT-PCR isolates. The prime target sites had no mismatches. Phylogenetic analysis of the HA gene showed that both the positive and negative real-time RT-PCR isolates were grouped in clade 6B.1; however, the real-time RT-PCR negative viruses were located in a subgroup that referred to substitution I295V. CONCLUSION: Constant monitoring of genetic changes in the circulating influenza A(H1N1)pdm09 viruses is important for maintaining the sensitivity of molecular detection assays.


Subject(s)
Delayed Diagnosis/trends , Influenza, Human/diagnosis , Sequence Analysis, DNA/standards , Hemagglutination Tests/methods , Hemagglutinins/analysis , Hemagglutinins/genetics , Humans , Influenza A Virus, H1N1 Subtype/genetics , Influenza A Virus, H1N1 Subtype/pathogenicity , Influenza, Human/epidemiology , Influenza, Human/mortality , Mutation/genetics , Phylogeny , Reverse Transcriptase Polymerase Chain Reaction/methods , Sequence Analysis, DNA/methods , Sequence Analysis, DNA/trends , Vietnam
4.
Vaccine ; 35(7): 1008-1017, 2017 02 15.
Article in English | MEDLINE | ID: mdl-28109707

ABSTRACT

The efficacy and detrimental effect of mucosal vaccination with an inactivated influenza vaccine were examined in a macaque model by intranasal administration with small amounts of inactivated whole virus particles and challenge by a human-derived H5N1 highly pathogenic avian influenza virus infection. Repeated nasal inoculation with the whole particle vaccine of an inactivated virus, A/duck/Hokkaido/Vac-3/2007 (H5N1) (Vac-3), induced antigen-specific IgA and IgG antibody production in nasal swabs and plasma. Vac-3-specific IgE production was also found in the nasal swabs. Nasal vaccination with Vac-3 induced broader cross-clade neutralization activity than did subcutaneous vaccination. After challenge infection, repeated nasal vaccination almost completely prevented the propagation of virus in the upper and lower airways and protected cynomolgus macaques from viral pneumonia by induction of IgA-producing B cells in the lungs. On the other hand, eosinophil clusters were observed in the lungs of vaccinated macaques. Although Vac-3-specific IgE antibody and IL-13 levels were decreased after infection compared to those before infection and no anaphylaxis in vaccinated macaques was detected after challenge infection, our results suggest that we have to pay attention to potential allergic responses at repeated nasal vaccination, especially in people who have an airway allergy.


Subject(s)
Administration, Intranasal/adverse effects , Antibodies, Neutralizing/biosynthesis , Antibodies, Viral/biosynthesis , Drug Hypersensitivity/etiology , Influenza Vaccines/administration & dosage , Orthomyxoviridae Infections/prevention & control , Vaccination , Animals , Drug Hypersensitivity/immunology , Drug Hypersensitivity/pathology , Eosinophils/drug effects , Eosinophils/immunology , Female , Immunoglobulin A/biosynthesis , Immunoglobulin E/biosynthesis , Immunoglobulin G/biosynthesis , Influenza A Virus, H5N1 Subtype/drug effects , Influenza A Virus, H5N1 Subtype/immunology , Macaca fascicularis/immunology , Macaca fascicularis/virology , Nasal Mucosa/drug effects , Nasal Mucosa/immunology , Neutrophil Infiltration/drug effects , Orthomyxoviridae Infections/immunology , Orthomyxoviridae Infections/virology , Vaccines, Inactivated , Virion/chemistry , Virion/immunology
5.
BMC Public Health ; 15: 940, 2015 Sep 22.
Article in English | MEDLINE | ID: mdl-26395076

ABSTRACT

BACKGROUND: A dengue outbreak in an ecotourism destination spot in Vietnam, from September to November 2013, impacted a floating village of fishermen on the coastal island of Cat Ba. The outbreak raises questions about how tourism may impact disease spread in rural areas. METHODS: Epidemiological data were obtained from the Hai Phong Preventive Medical Center (PMC), including case histories and residential location from all notified dengue cases from this outbreak. All household addresses were geo-located. Knox test, a spatio-temporal analysis that enables inference dengue clustering constrained by space and time, was performed on the geocoded locations. From the plasma available from two patients, positive for Dengue serotype 3 virus (DENV3), the Envelope (E) gene was sequenced, and their genetic relationships compared to other E sequences in the region. RESULTS: Of 192 dengue cases, the odds ratio of contracting dengue infections for people living in the floating villages compared to those living on the island was 4.9 (95 % CI: 3.6-6.7). The space-time analyses on 111 geocoded dengue residences found the risk of dengue infection to be the highest within 4 days and a radius of 20 m of a given case. Of the total of ten detected clusters with an excess risk greater than 2, the cluster with the highest number of cases was in the floating village area (24 patients for a total duration of 31 days). Phylogenetic analysis revealed a high homology of the two DENV3 strains (genotype III) from Cat Ba with DENV3 viruses circulating in Hanoi in the same year (99.1 %). CONCLUSIONS: Our study showed that dengue transmission is unlikely to be sustained on Cat Ba Island and that the 2013 epidemic likely originated through introduction of viruses from the mainland, potentially Hanoi. These findings suggest that prevention efforts should be focused on mainland rather than on the island.


Subject(s)
Dengue/epidemiology , Disease Outbreaks/statistics & numerical data , Adolescent , Adult , Aged , Aged, 80 and over , Animals , Child , Child, Preschool , Cluster Analysis , Dengue Virus , Enzyme-Linked Immunosorbent Assay , Female , Humans , Male , Middle Aged , Phylogeny , Rural Population/statistics & numerical data , Spatio-Temporal Analysis , Vietnam/epidemiology , Young Adult
6.
Article in English | MEDLINE | ID: mdl-26798557

ABSTRACT

INTRODUCTION: Influenza B viruses circulate throughout Viet Nam, and their activities vary by region. There have been two antigenically distinct lineages of influenza B viruses co-circulating in the past 20 years; however, only one lineage is selected as a component of contemporary trivalent seasonal influenza vaccines. To improve the understanding of circulating influenza B lineages and influenza vaccine mismatches, we report the virus lineages circulating in northern Viet Nam over an eight-year period (2007-2014). METHODS: Lineages of 331 influenza B viruses were characterized by haemagglutination inhibition assay against standard reference ferret (Yamagata) and sheep (Victoria) antisera. Sequence analysis of the haemagglutinin gene was performed in 64 selected influenza B isolates. RESULTS: The proportion of influenza B lineages changed by year. The Yamagata lineage predominated in 2007, 2008 and 2012; the Victoria lineage predominated in 2009-2014 except 2012. The two lineages showed continuous evolution over time. The Northern Hemisphere's influenza vaccine components were mismatched with the predominant circulating viruses in 2007, 2009 and 2014. DISCUSSION: The seasonality of influenza B activity is more variable in tropical and subtropical regions than in temperate zones. Our data showed a common co-circulation of both influenza B lineages in northern Viet Nam, and it was difficult to predict which one was the predominant lineage. Quadrivalent influenza vaccines containing both lineages may improve the effectiveness of influenza vaccine programmes in the future.


Subject(s)
Influenza B virus , Influenza, Human/virology , Antigens, Viral/analysis , Female , Hemagglutination Inhibition Tests , Hemagglutinin Glycoproteins, Influenza Virus/genetics , Humans , Influenza B virus/classification , Influenza B virus/genetics , Influenza B virus/immunology , Influenza Vaccines/administration & dosage , Influenza, Human/epidemiology , Influenza, Human/prevention & control , Male , Phylogeny , Sentinel Surveillance , Sequence Analysis, DNA , Vietnam/epidemiology
7.
Antimicrob Agents Chemother ; 58(8): 4795-803, 2014 Aug.
Article in English | MEDLINE | ID: mdl-24913156

ABSTRACT

Highly pathogenic avian influenza A (H5N1) viruses cause severe and often fatal disease in humans. We evaluated the efficacy of repeated intravenous dosing of the neuraminidase inhibitor peramivir against highly pathogenic avian influenza virus A/Vietnam/UT3040/2004 (H5N1) infection in cynomolgus macaques. Repeated dosing of peramivir (30 mg/kg/day once a day for 5 days) starting immediately after infection significantly reduced viral titers in the upper respiratory tract, body weight loss, and cytokine production and resulted in a significant body temperature reduction in infected macaques compared with that of macaques administered a vehicle (P < 0.05). Repeated administration of peramivir starting at 24 h after infection also resulted in a reduction in viral titers and a reduction in the period of virus detection in the upper respiratory tract, although the body temperature change was not statistically significant. The macaque model used in the present study demonstrated that inhibition of viral replication at an early time point after infection by repeated intravenous treatment with peramivir is critical for reduction of the production of cytokines, i.e., interleukin-6 (IL-6), tumor necrosis factor α, gamma interferon, monocyte chemotactic protein 1, and IL-12p40, resulting in amelioration of symptoms caused by highly pathogenic avian influenza virus infection.


Subject(s)
Antiviral Agents/pharmacology , Cyclopentanes/pharmacology , Guanidines/pharmacology , Influenza A Virus, H5N1 Subtype/drug effects , Influenza A Virus, H5N1 Subtype/pathogenicity , Orthomyxoviridae Infections/drug therapy , Orthomyxoviridae Infections/veterinary , Acids, Carbocyclic , Administration, Intravenous , Animals , Body Temperature/drug effects , Body Weight/drug effects , Chemokine CCL2/antagonists & inhibitors , Chemokine CCL2/biosynthesis , Drug Administration Schedule , Female , Influenza A Virus, H5N1 Subtype/physiology , Interferon-gamma/antagonists & inhibitors , Interferon-gamma/biosynthesis , Interleukin-12 Subunit p40/antagonists & inhibitors , Interleukin-12 Subunit p40/biosynthesis , Interleukin-6/antagonists & inhibitors , Interleukin-6/biosynthesis , Macaca fascicularis , Orthomyxoviridae Infections/physiopathology , Orthomyxoviridae Infections/virology , Time Factors , Treatment Outcome , Tumor Necrosis Factor-alpha/antagonists & inhibitors , Tumor Necrosis Factor-alpha/biosynthesis , Virulence , Virus Replication/drug effects
8.
PLoS One ; 8(12): e82740, 2013.
Article in English | MEDLINE | ID: mdl-24376571

ABSTRACT

H5N1 highly pathogenic avian influenza virus (HPAIV) infection has been reported in poultry and humans with expanding clade designations. Therefore, a vaccine that induces immunity against a broad spectrum of H5N1 viruses is preferable for pandemic preparedness. We established a second H5N1 vaccine candidate, A/duck/Hokkaido/Vac-3/2007 (Vac-3), in our virus library and examined the efficacy of inactivated whole particles of this strain against two clades of H5N1 HPAIV strains that caused severe morbidity in cynomolgus macaques. Virus propagation in vaccinated macaques infected with either of the H5N1 HPAIV strains was prevented compared with that in unvaccinated macaques. This vaccine also prevented propagation of a pandemic (H1N1) 2009 virus in macaques. In the vaccinated macaques, neutralization activity, which was mainly shown by anti-hemagglutinin antibody, against H5N1 HPAIVs in plasma was detected, but that against H1N1 virus was not detected. However, neuraminidase inhibition activity in plasma and T-lymphocyte responses in lymph nodes against H1N1 virus were detected. Therefore, cross-clade and heterosubtypic protective immunity in macaques consisted of humoral and cellular immunity induced by vaccination with Vac-3.


Subject(s)
Influenza A Virus, H1N1 Subtype/pathogenicity , Influenza A Virus, H5N1 Subtype/pathogenicity , Influenza Vaccines/immunology , Influenza, Human/epidemiology , Macaca fascicularis/virology , Orthomyxoviridae Infections/prevention & control , Vaccines, Inactivated/immunology , Animals , Antibodies, Viral/immunology , Antibody Formation/immunology , Birds/virology , Body Temperature , Female , Humans , Influenza A Virus, H1N1 Subtype/immunology , Influenza A Virus, H5N1 Subtype/immunology , Influenza, Human/immunology , Influenza, Human/prevention & control , Influenza, Human/virology , Macaca fascicularis/immunology , Neuraminidase/antagonists & inhibitors , Neuraminidase/metabolism , Neutralization Tests , Orthomyxoviridae Infections/immunology , Orthomyxoviridae Infections/virology , Pandemics , T-Lymphocytes/immunology , Vaccination , Viral Load
9.
Article in English | MEDLINE | ID: mdl-24015368

ABSTRACT

INTRODUCTION: Antiviral resistance has been reported in seasonal influenza A viruses and avian influenza A(H5N1) viruses in Viet Nam, raising concerns about the efficacy of treatment. METHODS: We analysed specimens from two sources during the period 2009-2012: influenza-positive samples from influenza-like illness patients at sentinel clinics in northern Viet Nam and isolates from patients with confirmed A(H5N1) infections. Pyrosequencing was used to detect mutations: H275Y [for A(H1N1) and A(H5N1)], E119V [for A(H3N2)] and I117V [for A(H5N1)]. A neuraminidase inhibition assay was used to determine the Inhibitory Concentration 50 (IC50) values for all influenza A and B isolates. RESULTS: There were 341 influenza A positive samples identified; influenza A(H1N1)pdm09 was identified most frequently (n = 215). In 2009, oseltamivir resistance was observed in 100% (19 of 19) of seasonal A(H1N1) isolates and 1.4% (3/215) of A(H1N1)pdm09 isolates. This H275Y mutation was not found in influenza subtypes A(H5N1) or A(H3N2) isolates. DISCUSSION: In Viet Nam, seasonal and A(H5N1) influenza vaccines are not currently available; thus, effective treatment is required. The presence of oseltamivir-resistant viruses is therefore a concern. Active surveillance for oseltamivir resistance among influenza viruses circulating in Viet Nam should be continued.


Subject(s)
Antiviral Agents/administration & dosage , Drug Resistance, Viral/drug effects , Enzyme Inhibitors/administration & dosage , Influenza B virus/drug effects , Influenza, Human/drug therapy , Oseltamivir/administration & dosage , Antiviral Agents/pharmacology , Enzyme Inhibitors/pharmacology , Humans , Influenza A Virus, H1N1 Subtype/drug effects , Influenza A Virus, H3N2 Subtype/drug effects , Influenza A Virus, H5N1 Subtype/drug effects , Influenza, Human/epidemiology , Mutation/drug effects , Oseltamivir/pharmacology , Population Surveillance , Vietnam/epidemiology
10.
J Infect Dis ; 207(1): 89-97, 2013 Jan 01.
Article in English | MEDLINE | ID: mdl-23053629

ABSTRACT

BACKGROUND: The neuraminidase (NA) inhibitor oseltamivir is widely used to treat patients infected with influenza viruses. An Ile-to-Val change at position 117 in influenza A virus subtype H5N1 NA (NA-I117V) confers a reduction in susceptibility to oseltamivir carboxylate. However, the in vivo relevance and molecular basis of the decreased sensitivity mediated by this mutation are poorly understood. METHODS: We created single-point-mutant viruses with 3 genetically different backgrounds (ie, 1 belonging to clade 1 and 2 belonging to clade 2.3.4) and evaluated the effects of the I117V mutation on oseltamivir susceptibility in vitro, in vivo, and in silico. RESULTS: The NA-I117V mutation conferred a slight reduction in susceptibility to oseltamivir in vitro (1.3- to 6.3-fold changes), although it did not substantially compromise NA enzymatic activity. Mice infected with I117V virus exhibited reduced susceptibility to oseltamivir and decreased survival in 2 of 3 virus pairs tested. Molecular dynamics simulations revealed that I117V caused the loss of hydrogen bonds between an arginine at position 118 and the carboxyl group of oseltamivir, leading to a lower binding affinity for oseltamivir. CONCLUSIONS: Our findings provide new insight into the mechanism of NA-I117V-mediated oseltamivir resistance in highly pathogenic H5N1 avian influenza viruses.


Subject(s)
Antiviral Agents/pharmacology , Drug Resistance, Viral/genetics , Influenza A Virus, H5N1 Subtype/genetics , Neuraminidase/antagonists & inhibitors , Orthomyxoviridae Infections/virology , Oseltamivir/pharmacology , Animals , Antiviral Agents/therapeutic use , Birds , Enzyme Inhibitors/pharmacology , Enzyme Inhibitors/therapeutic use , Female , Humans , Influenza A Virus, H5N1 Subtype/drug effects , Influenza A Virus, H5N1 Subtype/enzymology , Influenza in Birds/drug therapy , Influenza in Birds/virology , Influenza, Human/drug therapy , Influenza, Human/virology , Mice , Mice, Inbred BALB C , Molecular Dynamics Simulation , Neuraminidase/genetics , Neuraminidase/metabolism , Orthomyxoviridae Infections/drug therapy , Oseltamivir/therapeutic use , Point Mutation , Poultry , Viral Proteins/antagonists & inhibitors , Viral Proteins/metabolism , Virus Replication
11.
Article in English | WPRIM (Western Pacific) | ID: wpr-6738

ABSTRACT

Introduction: Antiviral resistance has been reported in seasonal influenza A viruses and avian influenza A(H5N1) viruses in Viet Nam, raising concerns about the efficacy of treatment. Methods: We analysed specimens from two sources during the period 2009–2012: influenza-positive samples from influenza-like illness patients at sentinel clinics in northern Viet Nam and isolates from patients with confirmed A(H5N1) infections. Pyrosequencing was used to detect mutations: H275Y [for A(H1N1) and A(H5N1)], E119V [for A(H3N2)] and I117V [for A(H5N1)]. A neuraminidase inhibition assay was used to determine the Inhibitory Concentration 50 (IC50) values for all influenza A and B isolates. Results: There were 341 influenza A positive samples identified; influenza A(H1N1)pdm09 was identified most frequently (n = 215). In 2009, oseltamivir resistance was observed in 100% (19 of 19) of seasonal A(H1N1) isolates and 1.4% (3/215) of A(H1N1)pdm09 isolates. This H275Y mutation was not found in influenza subtypes A(H5N1) or A(H3N2) isolates. Discussion: In Viet Nam, seasonal and A(H5N1) influenza vaccines are not currently available; thus, effective treatment is required. The presence of oseltamivir-resistant viruses is therefore a concern. Active surveillance for oseltamivir resistance among influenza viruses circulating in Viet Nam should be continued.

12.
J Virol ; 86(3): 1411-20, 2012 Feb.
Article in English | MEDLINE | ID: mdl-22090115

ABSTRACT

Quail are thought to serve as intermediate hosts of influenza A viruses between aquatic birds and terrestrial birds, such as chickens, due to their high susceptibility to aquatic-bird viruses, which then adapt to replicate efficiently in their new hosts. However, does replication of aquatic-bird influenza viruses in quail similarly result in their efficient replication in humans? Using sialic acid-galactose linkage-specific lectins, we found both avian (sialic acid-α2-3-galactose [Siaα2-3Gal] linkages on sialyloligosaccharides)--and human (Siaα2-6Gal)-type receptors on the tracheal cells of quail, consistent with previous reports. We also passaged a duck H3N2 virus in quail 19 times. Sequence analysis revealed that eight mutations accumulated in hemagglutinin (HA) during these passages. Interestingly, many of the altered HA amino acids found in the adapted virus are present in human seasonal viruses, but not in duck viruses. We also found that stepwise stalk deletion of neuraminidase occurred during passages, resulting in reduced neuraminidase function. Despite some hemagglutinin mutations near the receptor binding pocket, appreciable changes in receptor specificity were not detected. However, reverse-genetics-generated viruses that possessed the hemagglutinin and neuraminidase of the quail-passaged virus replicated significantly better than the virus possessing the parent HA and neuraminidase in normal human bronchial epithelial cells, whereas no significant difference in replication between the two viruses was observed in duck cells. Further, the quail-passaged but not the original duck virus replicated in human bronchial epithelial cells. These data indicate that quail can serve as intermediate hosts for aquatic-bird influenza viruses to be transmitted to humans.


Subject(s)
Adaptation, Physiological , Ducks/virology , Influenza A Virus, H3N2 Subtype/physiology , Influenza in Birds/virology , Quail/virology , Animals , Cell Line , Dogs , Hemagglutinin Glycoproteins, Influenza Virus/chemistry , Hemagglutinin Glycoproteins, Influenza Virus/genetics , Influenza A Virus, H3N2 Subtype/genetics , Intestinal Mucosa/metabolism , Models, Molecular , Reverse Transcriptase Polymerase Chain Reaction , Sialic Acids/metabolism
13.
Virus Res ; 163(2): 448-53, 2012 Feb.
Article in English | MEDLINE | ID: mdl-22108585

ABSTRACT

We report the genetic characterization of low pathogenic avian influenza (LPAI) viruses isolated from domestic ducks in northern Vietnam in 2009. In total, 22 influenza A viruses consisting of 21 H6N1 subtypes and one H9N2 subtype were isolated from 1488 ducks collected in February, March, and April 2009, accounting the overall virus isolation rate for 1.5%. No H5N1 strain was isolated in this study. Phylogenetic analysis indicated that all the eight genes of the H6N1 and H9N2 subtypes analyzed in this study were similar to those isolated in Korea, southeast China and northern Japan, and wild birds which migrate along the coastal East Asian Flyway are estimated to transmit these viruses. There was no evidence that the H6N1 and H9N2 subtypes share the gene segments with H5N1 subtypes. However, it is important to monitor the prevalence and genetical backgrounds of LPAI viruses among poultry in an area where several different influenza A subtypes are in circulation.


Subject(s)
Ducks/virology , Influenza A virus/classification , Influenza A virus/isolation & purification , Influenza in Birds/virology , Animals , Cluster Analysis , Genotype , Molecular Epidemiology , Phylogeny , RNA, Viral/genetics , Sequence Analysis, DNA , Vietnam
14.
J Virol ; 85(23): 12455-63, 2011 Dec.
Article in English | MEDLINE | ID: mdl-21957281

ABSTRACT

Continuing evolution of highly pathogenic (HP) H5N1 influenza viruses in wild birds with transmission to domestic poultry and humans poses a pandemic threat. There is an urgent need for a simple and rapid serological diagnostic assay which can differentiate between antibodies to seasonal and H5N1 strains and that could provide surveillance tools not dependent on virus isolation and nucleic acid technologies. Here we describe the establishment of H5N1 SeroDetect enzyme-linked immunosorbent assay (ELISA) and rapid test assays based on three peptides in HA2 (488-516), PB1-F2 (2-75), and M2e (2-24) that are highly conserved within H5N1 strains. These peptides were identified by antibody repertoire analyses of H5N1 influenza survivors in Vietnam using whole-genome-fragment phage display libraries (GFPDLs). To date, both platforms have demonstrated high levels of sensitivity and specificity in detecting H5N1 infections (clade 1 and clade 2.3.4) in Vietnamese patients as early as 7 days and up to several years postinfection. H5N1 virus-uninfected individuals in Vietnam and the United States, including subjects vaccinated with seasonal influenza vaccines or with confirmed seasonal virus infections, did not react in the H5N1-SeroDetect assays. Moreover, sera from individuals vaccinated with H5N1 subunit vaccine with moderate anti-H5N1 neutralizing antibody titers did not react positively in the H5N1-SeroDetect ELISA or rapid test assays. The simple H5N1-SeroDetect ELISA and rapid tests could provide an important tool for large-scale surveillance for potential exposure to HP H5N1 strains in both humans and birds.


Subject(s)
Influenza A Virus, H5N1 Subtype/immunology , Influenza, Human/diagnosis , Viral Proteins/immunology , Adolescent , Adult , Aged , Aged, 80 and over , Antibodies, Viral/immunology , Child , Child, Preschool , Cohort Studies , Enzyme-Linked Immunosorbent Assay , Female , Humans , Immunoenzyme Techniques , Influenza, Human/immunology , Influenza, Human/virology , Male , Middle Aged , Peptide Fragments/immunology , Peptide Library , Sensitivity and Specificity , Serologic Tests , Young Adult
15.
J Virol ; 85(10): 5202-7, 2011 May.
Article in English | MEDLINE | ID: mdl-21389133

ABSTRACT

Although H5N1 influenza A viruses can cause systemic infection, their neurotropism and long-term effects on the central nervous system (CNS) are not fully understood. We assessed H5N1viral invasion of the CNS and its long-term effects in a ferret model. An H5N1 virus caused nonsuppurative encephalitis, which lasted for 3 months without neurologic signs. Further, another H5N1 virus caused nonsuppurative vasculitis with brain hemorrhage. Three-dimensional analysis of viral distribution in the brain identified the olfactory system as a major route for brain invasion. The efficient growth of virus in the upper respiratory tract may thus facilitate viral brain invasion.


Subject(s)
Encephalitis, Viral/pathology , Encephalitis, Viral/virology , Influenza A Virus, H5N1 Subtype/pathogenicity , Orthomyxoviridae Infections/complications , Orthomyxoviridae Infections/pathology , Animals , Disease Models, Animal , Ferrets , Olfactory Pathways/virology , Orthomyxoviridae Infections/virology
16.
PLoS One ; 6(2): e16965, 2011 Feb 14.
Article in English | MEDLINE | ID: mdl-21347264

ABSTRACT

BACKGROUND: The spread of infectious diseases from person to person is determined by the frequency and nature of contacts between infected and susceptible members of the population. Although there is a long history of using mathematical models to understand these transmission dynamics, there are still remarkably little empirical data on contact behaviors with which to parameterize these models. Even starker is the almost complete absence of data from developing countries. We sought to address this knowledge gap by conducting a household based social contact diary in rural Vietnam. METHODS AND FINDINGS: A diary based survey of social contact patterns was conducted in a household-structured community cohort in North Vietnam in 2007. We used generalized estimating equations to model the number of contacts while taking into account the household sampling design, and used weighting to balance the household size and age distribution towards the Vietnamese population. We recorded 6675 contacts from 865 participants in 264 different households and found that mixing patterns were assortative by age but were more homogenous than observed in a recent European study. We also observed that physical contacts were more concentrated in the home setting in Vietnam than in Europe but the overall level of physical contact was lower. A model of individual versus household vaccination strategies revealed no difference between strategies in the impact on R(0). CONCLUSIONS AND SIGNIFICANCE: This work is the first to estimate contact patterns relevant to the spread of infections transmitted from person to person by non-sexual routes in a developing country setting. The results show interesting similarities and differences from European data and demonstrate the importance of context specific data.


Subject(s)
Communicable Disease Control/methods , Communicable Diseases/transmission , Data Collection , Interpersonal Relations , Adolescent , Adult , Age Factors , Analysis of Variance , Child , Child, Preschool , Female , Housing/statistics & numerical data , Humans , Immunization , Infant , Infant, Newborn , Male , Middle Aged , Time Factors , Vietnam , Young Adult
17.
J Gen Virol ; 91(Pt 10): 2485-90, 2010 Oct.
Article in English | MEDLINE | ID: mdl-20592108

ABSTRACT

Vietnam is one of the countries most affected by highly pathogenic H5N1 influenza A viruses. To evaluate the potential pathogenicity in mammals of H5N1 viruses isolated from humans in Vietnam, we determined the sequences of all eight genes of 22 human isolates collected between 2003 and 2008 and compared their virulence in mice. The isolates were classified into clade 1 and clade 2.3.4 and differed in pathogenicity for mice. Whilst lysine at position 627 of PB2 (PB2-627K) is a critical virulence determinant for clade 2.3.4 viruses, asparagine at position 701 of PB2 and other unknown virulence determinants appear to be involved in the high pathogenicity of clade 1 viruses, warranting further studies to determine the factors responsible for the high virulence of H5N1 viruses in mammals.


Subject(s)
Influenza A Virus, H5N1 Subtype/isolation & purification , Influenza A Virus, H5N1 Subtype/pathogenicity , Influenza, Human/virology , Animals , Asparagine/genetics , Cluster Analysis , Disease Models, Animal , Genotype , Humans , Lysine/genetics , Mice , Mice, Inbred BALB C , Molecular Sequence Data , Orthomyxoviridae Infections/pathology , Orthomyxoviridae Infections/virology , Phylogeny , RNA, Viral/genetics , RNA-Dependent RNA Polymerase/genetics , Sequence Analysis, DNA , Sequence Homology , Vietnam , Viral Proteins/genetics , Virulence , Virulence Factors/genetics
18.
PLoS Pathog ; 6(2): e1000786, 2010 Feb 26.
Article in English | MEDLINE | ID: mdl-20195462

ABSTRACT

Currently, two neuraminidase (NA) inhibitors, oseltamivir and zanamivir, which must be administrated twice daily for 5 days for maximum therapeutic effect, are licensed for the treatment of influenza. However, oseltamivir-resistant mutants of seasonal H1N1 and highly pathogenic H5N1 avian influenza A viruses have emerged. Therefore, alternative antiviral agents are needed. Recently, a new neuraminidase inhibitor, R-125489, and its prodrug, CS-8958, have been developed. CS-8958 functions as a long-acting NA inhibitor in vivo (mice) and is efficacious against seasonal influenza strains following a single intranasal dose. Here, we tested the efficacy of this compound against H5N1 influenza viruses, which have spread across several continents and caused epidemics with high morbidity and mortality. We demonstrated that R-125489 interferes with the NA activity of H5N1 viruses, including oseltamivir-resistant and different clade strains. A single dose of CS-8958 (1,500 microg/kg) given to mice 2 h post-infection with H5N1 influenza viruses produced a higher survival rate than did continuous five-day administration of oseltamivir (50 mg/kg twice daily). Virus titers in lungs and brain were substantially lower in infected mice treated with a single dose of CS-8958 than in those treated with the five-day course of oseltamivir. CS-8958 was also highly efficacious against highly pathogenic H5N1 influenza virus and oseltamivir-resistant variants. A single dose of CS-8958 given seven days prior to virus infection also protected mice against H5N1 virus lethal infection. To evaluate the improved efficacy of CS-8958 over oseltamivir, the binding stability of R-125489 to various subtypes of influenza virus was assessed and compared with that of other NA inhibitors. We found that R-125489 bound to NA more tightly than did any other NA inhibitor tested. Our results indicate that CS-8958 is highly effective for the treatment and prophylaxis of infection with H5N1 influenza viruses, including oseltamivir-resistant mutants.


Subject(s)
Antiviral Agents/pharmacology , Orthomyxoviridae Infections/drug therapy , Prodrugs/pharmacology , Zanamivir/analogs & derivatives , Animals , Female , Guanidines , Influenza A Virus, H5N1 Subtype/drug effects , Mice , Mice, Inbred BALB C , Neuraminidase/antagonists & inhibitors , Neuraminidase/drug effects , Oseltamivir/pharmacology , Pyrans , Sialic Acids , Zanamivir/pharmacology
19.
Proc Natl Acad Sci U S A ; 107(2): 882-7, 2010 Jan 12.
Article in English | MEDLINE | ID: mdl-20080770

ABSTRACT

The neuraminidase inhibitors oseltamivir and zanamivi are used to treat H5N1 influenza. However, oseltamivir-resistant H5N1 viruses have been isolated from oseltamivir-treated patients. Moreover, reassortment between H5N1 viruses and oseltamvir-resistant human H1N1 viruses currently circulating could create oseltamivir-resistant H5N1 viruses, rendering the oseltamivir stockpile obsolete. Therefore, there is a need for unique and effective antivirals to combat H5N1 influenza viruses. The investigational drug T-705 (favipiravir; 6-fluoro-3-hydroxy-2-pyrazinecarboxamide) has antiviral activity against seasonal influenza viruses and a mouse-adapted H5N1 influenza virus derived from a benign duck virus. However, its efficacy against highly pathogenic H5N1 viruses, which are substantially more virulent, remains unclear. Here, we demonstrate that T-705 effectively protects mice from lethal infection with oseltamivir-sensitive or -resistant highly pathogenic H5N1 viruses. Furthermore, our biochemical analysis suggests that T-705 ribofuranosyl triphosphate, an active form of T-705, acts like purines or purine nucleosides in human cells and does not inhibit human DNA synthesis. We conclude that T-705 shows promise as a therapeutic agent for the treatment of highly pathogenic H5N1 influenza patients.


Subject(s)
Amides/pharmacology , Antiviral Agents/pharmacology , Influenza A Virus, H5N1 Subtype/drug effects , Influenza, Human/drug therapy , Pyrazines/pharmacology , Aged , Animals , Cell Line , Child , DNA Replication/drug effects , DNA-Directed DNA Polymerase/drug effects , DNA-Directed DNA Polymerase/metabolism , Dogs , Drug Resistance, Viral , Humans , Influenza, Human/mortality , Kidney , Kinetics , Lung/drug effects , Oseltamivir/pharmacology , Ribavirin/pharmacology
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