Assessing mangrove species diversity, zonation and functional indicators in response to natural, regenerated, and rehabilitated succession.

The United Nations Decade on Ecosystem restoration (2021¬-2030) lists mangrove ecosystems as a restoration priority. Interest in their conservation has increased recently due to their widespread degradation. Anthropogenic stressors and rehabilitation practices, specifically, have resulted in a significant decline in their species compositions. We investigated the knowledge gaps in terms of potential spatial diversity, intertidal zonation, and the historic state of mangrove forest species, and tested the role of environmental factors such as topography, as well as rehabilitation practices on diversity. Diversity and complexity indices, surface elevation, and species and structural diversities along three simplified transect lines over a broad geographical area and under various management practices were analyzed in Trat province, Thailand. Quantitative statistical zonation analyses within each transect and at the landscape-scale were performed using randomization tests and hierarchical cluster analysis. A modified "automatic regrowth monitoring algorithm (ARMA)," based on Landsat (1987-2020) and Sentinel-2 MSI (2015-2020) annual median composites was also used. Fifteen species were identified, with Ceriops tagal as the dominant species. Statistical analysis, however, failed to identify any significant zonation patterns at transect or landscape-scales at specific elevations. Rehabilitated and naturally regenerated stands showed gradual increases in their Normalized Difference Infrared Index over time. After 30 years, the rehabilitated stands made up of Rhizophoraceae monocultures were the same height as the adjacent natural stands. Depending on the location and propagule availability, the diversity and structure of regenerated stands exhibited high variation. Effluent from shrimp farms may have contributed to the disturbance of the forest stands and changes in shrimp farming practices could have facilitated their recovery. The results of the present study provide a valuable diversity baseline for the study site and secondary succession in rehabilitated and regenerated mangroves. The ARMA algorithm has also been confirmed as a valuable tool for future investigations of secondary succession and mangrove biodiversity status.

Diversity of coronavirus in bats from Eastern Thailand.

BACKGROUND: Bats are reservoirs for a diverse range of coronaviruses (CoVs), including those closely related to human pathogens such as Severe Acute Respiratory Syndrome (SARS) CoV and Middle East Respiratory Syndrome CoV. There are approximately 139 bat species reported to date in Thailand, of which two are endemic species. Due to the zoonotic potential of CoVs, standardized surveillance efforts to characterize viral diversity in wildlife are imperative. FINDINGS: A total of 626 bats from 19 different bat species were individually sampled from 5 provinces in Eastern Thailand between 2008 and 2013 (84 fecal and 542 rectal swabs). Samples collected (either fresh feces or rectal swabs) were placed directly into RNA stabilization reagent, transported on ice within 24 hours and preserved at -80°C until further analysis. CoV RNA was detected in 47 specimens (7.6%), from 13 different bat species, using broadly reactive consensus PCR primers targeting the RNA-Dependent RNA Polymerase gene designed to detect all CoVs. Thirty seven alphacoronaviruses, nine lineage D betacoronaviruses, and one lineage B betacoronavirus (SARS-CoV related) were identified. Six new bat CoV reservoirs were identified in our study, namely Cynopterus sphinx, Taphozous melanopogon, Hipposideros lekaguli, Rhinolophus shameli, Scotophilus heathii and Megaderma lyra. CONCLUSIONS: CoVs from the same genetic lineage were found in different bat species roosting in similar or different locations. These data suggest that bat CoV lineages are not strictly concordant with their hosts. Our phylogenetic data indicates high diversity and a complex ecology of CoVs in bats sampled from specific areas in eastern regions of Thailand. Further characterization of additional CoV genes may be useful to better describe the CoV divergence.