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1.
Sci Rep ; 13(1): 20784, 2023 Nov 27.
Article in English | MEDLINE | ID: mdl-38012171

ABSTRACT

During the continuous charge and discharge process in lithium-sulfur batteries, one of the next-generation batteries, polysulfides are generated in the battery's electrolyte, and impact its performance in terms of power and capacity by involving the process. The amount of polysulfides in the electrolyte could be estimated by the change of the Gibbs free energy of the electrolyte, [Formula: see text] in the presence of polysulfide. However, obtaining [Formula: see text] of the diverse mixtures of components in the electrolyte is a complex and expensive task that shows itself as a bottleneck in optimization of electrolytes. In this work, we present a machine-learning approach for predicting [Formula: see text] of electrolytes. The proposed architecture utilizes (1) an attention-based model (Attentive FP), a contrastive learning model (MolCLR) or morgan fingerprints to represent chemical components, and (2) transformers to account for the interactions between chemicals in the electrolyte. This architecture was not only capable of predicting electrolyte properties, including those of chemicals not used during training, but also providing insights into chemical interactions within electrolytes. It revealed that interactions with other chemicals relate to the logP and molecular weight of the chemicals.

2.
J Acoust Soc Am ; 154(3): 1401-1412, 2023 Sep 01.
Article in English | MEDLINE | ID: mdl-37672306

ABSTRACT

Chaotic reverberation in a cavity, when coupled with time reversal acoustics, can be harnessed to build a perfect time-reversal mirror for transmitting and receiving highly focused sounds with a small number of transducers. In this article, a virtual receiving array, comprised of a single receiving transducer and a chaotic cavity, is developed based on time reversal processing of the reverberation inside the cavity. A prototype array, having 10 × 10 virtual receiving elements, is built and evaluated against a comparable physical array in terms of its localization and waveform reproduction capabilities. It turns out that the most crucial factor in the success of a virtual array is the ergodicity of its chaotic cavity, the exact mathematical expression for which is also derived. The virtual receiving array presented here may find some niche applications in reverberant environments, where a physical array turns out to be too costly or cumbersome to operate.

3.
J Chem Inf Model ; 63(18): 5755-5763, 2023 09 25.
Article in English | MEDLINE | ID: mdl-37683188

ABSTRACT

New solid-state materials have been discovered using various approaches from atom substitution in density functional theory (DFT) to generative models in machine learning. Recently, generative models have shown promising performance in finding new materials. Crystal generation with deep learning has been applied in various methods to discover new crystals. However, most generative models can only be applied to materials with specific elements or generate structures with random compositions. In this work, we developed a model that can generate crystals with desired compositions based on a crystal diffusion variational autoencoder. We generated crystal structures for 14 compositions of three types of materials in different applications. The generated structures were further stabilized using DFT calculations. We found the most stable structures in the existing database for all but one composition, even though eight compositions among them were not in the data set trained in a crystal diffusion variational autoencoder. This substantiates the prospect of the generation of an extensive range of compositions. Finally, 205 unique new crystal materials with energy above hull <100 meV/atom were generated. Moreover, we compared the average formation energy of the crystals generated from five compositions, two of which were hypothetical, with that of traditional methods like atom substitution and a generative model. The generated structures had lower formation energy than those of other models, except for one composition. These results demonstrate that our approach can be applied stably in various fields to design stable inorganic materials based on machine learning.


Subject(s)
Deep Learning , Databases, Factual , Density Functional Theory , Diffusion , Machine Learning
4.
Bioact Mater ; 28: 358-375, 2023 Oct.
Article in English | MEDLINE | ID: mdl-37334068

ABSTRACT

Synergistic immunotherapy of immune checkpoint blockade (ICB) and immunogenic cell death (ICD) has shown remarkable therapeutic efficacy in various cancers. However, patients show low response rates and undesirable outcomes to these combination therapies owing to the recycling mechanism of programmed death-ligand 1 (PD-L1) and the systemic toxicity of ICD-inducing chemotherapeutic drugs. Herein, we propose all-in-one glycol chitosan nanoparticles (CNPs) that can deliver anti-PD-L1 peptide (PP) and doxorubicin (DOX) to targeted tumor tissues for a safe and more effective synergistic immunotherapy. The PP-CNPs, which are prepared by conjugating ᴅ-form PP (NYSKPTDRQYHF) to CNPs, form stable nanoparticles that promote multivalent binding with PD-L1 proteins on the targeted tumor cell surface, resulting in effective lysosomal PD-L1 degradation in contrast with anti-PD-L1 antibody, which induces recycling of endocytosed PD-L1. Consequently, PP-CNPs prevent subcellular PD-L1 recycling and eventually destruct immune escape mechanism in CT26 colon tumor-bearing mice. Moreover, the ICD inducer, DOX is loaded into PP-CNPs (DOX-PP-CNPs) for synergistic ICD and ICB therapy, inducing a large number of damage-associated molecular patterns (DAMPs) in targeted tumor tissues with minimal toxicity in normal tissues. When the DOX-PP-CNPs are intravenously injected into CT26 colon tumor-bearing mice, PP and DOX are efficiently delivered to the tumor tissues via nanoparticle-derived passive and active targeting, which eventually induce both lysosomal PD-L1 degradation and substantial ICD, resulting in a high rate of complete tumor regression (CR: 60%) by a strong antitumor immune response. Collectively, this study demonstrates the superior efficacy of synergistic immunotherapy using all-in-one nanoparticles to deliver PP and DOX to targeted tumor tissues.

5.
Pharmaceutics ; 14(3)2022 Feb 22.
Article in English | MEDLINE | ID: mdl-35335852

ABSTRACT

Immunogenic cell death (ICD) is a powerful trigger eliciting strong immune responses against tumors. However, traditional chemoimmunotherapy (CIT) does not last long enough to induce sufficient ICD, and also does not guarantee the safety of chemotherapeutics. To overcome the disadvantages of the conventional approach, we used doxorubicin (DOX) as an ICD inducer, and poly(lactic-co-glycolic acid) (PLGA)-based nanomedicine platform for controlled release of DOX. The diameter of 138.7 nm of DOX-loaded PLGA nanoparticles (DP-NPs) were stable for 14 days in phosphate-buffered saline (PBS, pH 7.4) at 37 °C. Furthermore, DOX was continuously released for 14 days, successfully inducing ICD and reducing cell viability in vitro. Directly injected DP-NPs enabled the remaining of DOX in the tumor site for 14 days. In addition, repeated local treatment of DP-NPs actually lasted long enough to maintain the enhanced antitumor immunity, leading to increased tumor growth inhibition with minimal toxicities. Notably, DP-NPs treated tumor tissues showed significantly increased maturated dendritic cells (DCs) and cytotoxic T lymphocytes (CTLs) population, showing enhanced antitumor immune responses. Finally, the therapeutic efficacy of DP-NPs was maximized in combination with an anti-programmed death-ligand 1 (PD-L1) antibody (Ab). Therefore, we expect therapeutic efficacies of cancer CIT can be maximized by the combination of DP-NPs with immune checkpoint blockade (ICB) by achieving proper therapeutic window and continuously inducing ICD, with minimal toxicities.

6.
Biomaterials ; 279: 121189, 2021 12.
Article in English | MEDLINE | ID: mdl-34695659

ABSTRACT

Intraperitoneal (IP) chemotherapy has shown promising efficacy in ovarian cancer with peritoneal carcinomatosis (PC), but in vivo rapid clearance and severe toxicity of free anticancer drugs hinder the effective treatment. Herein, we propose the safe and effective IP chemotherapy with cathepsin B-specific doxorubicin prodrug nanoparticles (PNPs) in ovarian cancer with PC. The PNPs are prepared by self-assembling cathepsin B-specific cleavable peptide (FRRG) and doxorubicin (DOX) conjugates, which are further formulated with pluronic F68. The PNPs exhibit stable spherical structure and cytotoxic DOX is specifically released from PNPs via sequential enzymatic degradation by cathepsin B and intracellular proteases. The PNPs induce cytotoxicity in cathepsin B-overexpressing ovarian (SKOV-3 and HeyA8) and colon (MC38 and CT26) cancer cells, but not in cathepsin B-deficient normal cells in cultured condition. With enhanced cancer-specificity and in vivo residence time, IP injected PNPs efficiently accumulate within PC through two targeting mechanisms of direct penetration (circulation independent) and systemic blood vessel-associated accumulation (circulation dependent). As a result, IP chemotherapy with PNPs efficiently inhibit tumor progression with minimal side effects in peritoneal human ovarian tumor-bearing xenograft (POX) and patient derived xenograft (PDX) models. These results demonstrate that PNPs effectively inhibit progression of ovarian cancer with peritoneal carcinomatosis with minimal local and systemic toxicities by high cancer-specificity and favorable in vivo PK/PD profiles enhancing PC accumulation.


Subject(s)
Nanoparticles , Ovarian Neoplasms , Peritoneal Neoplasms , Prodrugs , Cathepsin B , Cell Line, Tumor , Doxorubicin/therapeutic use , Humans , Ovarian Neoplasms/drug therapy , Peritoneal Neoplasms/drug therapy
7.
Pharmaceutics ; 12(12)2020 Nov 29.
Article in English | MEDLINE | ID: mdl-33260446

ABSTRACT

Direct local delivery of immunogenic cell death (ICD) inducers to a tumor site is an attractive approach for leading ICD effectively, due to enabling the concentrated delivery of ICD inducers to the tumor site. Herein, we prepared doxorubicin (DOX)-loaded poly(lactic-co-glycolic acid) (PLGA) nanoparticles (NPs) using different molecular weight PLGA (7000 g/mol and 12,000 g/mol), showing different drug release kinetics. The different release kinetics of DOX might differently stimulate a tumor cell-specific immune response by releasing damage-associated molecular patterns (DAMPs), resulting in showing a different antitumor response in the living body. DOX-PLGA7K NPs showed faster DOX release kinetics than DOX-PLGA12K NPs in the physiological condition. DOX-PLGA7K NPs and DOX-PLGA12K NPs were successfully taken up by the CT-26 tumor cells, subsequently showing different DOX localization times at the nucleus. Released DOX successfully lead to cytotoxicity and HMGB1 release in vitro. Although the DOX-PLGA7K NPs and DOX-PLGA12K NPs showed different sustained DOX release kinetics in vitro, tumor growth of the CT-26 tumor was similarly inhibited for 28 days post-direct tumor injection. Furthermore, the immunological memory effect was successfully established by the ICD-based tumor-specific immune responses, including DC maturation and tumor infiltration of cytotoxic T lymphocytes (CTLs). We expect that the controlled release of ICD-inducible chemotherapeutic agents, using different types of nanomedicines, can provide potential in precision cancer immunotherapy by controlling the tumor-specific immune responses, thus improving the therapeutic efficacy.

8.
Ultrasonics ; 81: 50-58, 2017 11.
Article in English | MEDLINE | ID: mdl-28578220

ABSTRACT

A method for fabricating disposable membrane hydrophones is presented. The disposable hydrophones are intended for onetime use in such damaging environments as chemically contaminating fluids and high-amplitude (peak amplitude ∼100MPa) shock wave fields, where the use of commercial membrane hydrophones is not recommended. Fabrication of a hydrophone is done using only off-the-shelf components and hand tools, which translates into ease of fabrication and orders-of-magnitude reduction in unit cost. In particular, poling and sputtering, the two processes that are chiefly responsible for the cost and difficulty associated with the conventional fabrication method, are replaced with the use of pre-poled polyvinylidene fluoride (PVDF) films and polyethylene terephthalate (PET)-coated aluminum foils, respectively. Despite the seemingly crude construction, these disposable hydrophones can exhibit voltage sensitivity response that compares favorably with that of commercial hydrophones. For example, one prototype having a 2mm×2mm active element shows the end-of-cable voltage sensitivity of -270 (±1.9) dB re 1V/µPa over the frequency range of 1-10MHz.

9.
Ultrasonics ; 66: 133-139, 2016 Mar.
Article in English | MEDLINE | ID: mdl-26585217

ABSTRACT

We report a method of fabricating backing blocks for ultrasonic imaging transducers, using alumina/epoxy composites. Backing blocks contain scatterers such as alumina particles interspersed in the epoxy matrix for the effective scattering and attenuation of ultrasound. Here, the surface integrity can be an issue, where the composite material may be damaged during machining because of differences in strength, hardness and brittleness of the hard alumina particles and the soft epoxy matrix. Poor surface integrity results in the formation of air cavities between the backing block and the piezoelectric element upon assembly, hence the increased reflection off the backing block and the eventual degradation in image quality. Furthermore, with an issue of poor surface integrity due to machining, it is difficult to increase alumina as scatterers more than a specific mass fraction ratio. In this study, we increased the portion of alumina within epoxy matrix by obtaining an enhanced surface integrity using a net shape fabrication method, and verified that this method could allow us to achieve higher ultrasonic attenuation. Backing blocks were net-shaped with various mass fractions of alumina to characterize the formability and the mechanical properties, including hardness, surface roughness and the internal micro-structure, which were compared with those of machined backing blocks. The ultrasonic attenuation property of the backing blocks was also measured.


Subject(s)
Aluminum Oxide/analysis , Epoxy Compounds/analysis , Surface Properties , Ultrasonics , Ultrasonography/instrumentation , Acoustics , Transducers
10.
Sensors (Basel) ; 10(1): 330-41, 2010.
Article in English | MEDLINE | ID: mdl-22315543

ABSTRACT

A biosensor is composed of a bioreceptor, an associated recognition molecule, and a signal transducer that can selectively detect target substances for analysis. DNA based biosensors utilize receptor molecules that allow hybridization with the target analyte. However, most DNA biosensor research uses oligonucleotides as the target analytes and does not address the potential problems of real samples. The identification of recognition molecules suitable for real target analyte samples is an important step towards further development of DNA biosensors. This study examines the characteristics of DNA used as bioreceptors and proposes a hybrid evolution-based DNA sequence generating algorithm, based on DNA computing, to identify suitable DNA bioreceptor recognition molecules for stable hybridization with real target substances. The Traveling Salesman Problem (TSP) approach is applied in the proposed algorithm to evaluate the safety and fitness of the generated DNA sequences. This approach improves efficiency and stability for enhanced and variable-length DNA sequence generation and allows extension to generation of variable-length DNA sequences with diverse receptor recognition requirements.


Subject(s)
Algorithms , Biosensing Techniques/instrumentation , DNA Probes/analysis , DNA Probes/genetics , Sequence Analysis, DNA/instrumentation , Sequence Analysis, DNA/methods , Computer-Aided Design , Equipment Design , Equipment Failure Analysis , Evolution, Molecular
11.
Can J Anaesth ; 54(6): 453-60, 2007 Jun.
Article in English | MEDLINE | ID: mdl-17541074

ABSTRACT

PURPOSE: Tramadol produces a conduction block similar to lidocaine by exerting a local anesthetic-like effect. The aims of this in vitro study were to determine the effects of tramadol on the vasorelaxant response induced by the adenosine triphosphate-sensitive K(+) (K(ATP)) channel opener, levcromakalim, in an endothelium-denuded rat aorta, and to determine whether this effect of tramadol is stereoselective. METHODS: The effects of tramadol (racemic, R(-) and S(+): 10(-6), 10(-5), 5 x 10(-5) M), and glibenclamide on the levcromakalim dose-response curve were assessed in aortic rings that had been pre-contracted with phenylephrine. In the rings pretreated independently with naloxone, and glibenclamide, the levcromakalim dose-response curves were generated in the presence or absence of tramadol. The effect of tramadol on the dose-response curve of diltiazem was assessed. RESULTS: Racemic, R(-) and S(+) tramadol (10(-5), 5 x 10(-5) M) attenuated (P < 0.0001) levcromakalim-induced relaxation in the ring with or without naloxone in a dose-dependent manner. The magnitude of the R(-)-tramadol-induced attenuation of vasorelaxant response induced by levcromakalim was greater (P < 0.05) than that induced by S(+)-tramadol. Glibenclamide almost abolished the levcromakalim-induced relaxation. Tramadol, 5 x 10(-5) M, did not significantly alter the diltiazem-induced relaxation. CONCLUSION: These results suggest that a supraclinical dose (10(-5) M) of tramadol [racemic, R(-) and S(+)] attenuates the vasorelaxation mediated by the K(ATP) channels in the rat aorta. The R(-) tramadol-induced attenuation of vasorelaxation induced by levcromaklim was more potent than that induced by S(+) tramadol. This attenuation is independent of opioid receptor activation.


Subject(s)
Analgesics, Opioid/pharmacology , Muscle, Smooth, Vascular/drug effects , Potassium Channels, Inwardly Rectifying/physiology , Tramadol/pharmacology , Analgesics, Opioid/chemistry , Animals , Aorta/drug effects , Calcium Channel Blockers/pharmacology , Cromakalim/pharmacology , Data Interpretation, Statistical , Diltiazem/pharmacology , Dose-Response Relationship, Drug , Glyburide/pharmacology , Hypoglycemic Agents/pharmacology , In Vitro Techniques , KATP Channels , Male , Muscle Relaxation/drug effects , Potassium Channel Blockers/pharmacology , Potassium Channels, Inwardly Rectifying/drug effects , Rats , Rats, Sprague-Dawley , Stereoisomerism , Tramadol/chemistry
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