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Nat Commun ; 12(1): 4492, 2021 07 23.
Article in English | MEDLINE | ID: mdl-34301945

ABSTRACT

Human pluripotent stem cell (hPSC)-derived organoids and cells have similar characteristics to human organs and tissues. Thus, in vitro human organoids and cells serve as a superior alternative to conventional cell lines and animal models in drug development and regenerative medicine. For a simple and reproducible analysis of the quality of organoids and cells to compensate for the shortcomings of existing experimental validation studies, a quantitative evaluation method should be developed. Here, using the GTEx database, we construct a quantitative calculation system to assess similarity to the human organs. To evaluate our system, we generate hPSC-derived organoids and cells, and detected organ similarity. To facilitate the access of our system by researchers, we develop a web-based user interface presenting similarity to the appropriate organs as percentages. Thus, this program could provide valuable information for the generation of high-quality organoids and cells and a strategy to guide proper lineage-oriented differentiation.


Subject(s)
Algorithms , Cell Differentiation/genetics , Organ Specificity/genetics , Organoids/metabolism , Pluripotent Stem Cells/metabolism , Transcriptome/genetics , Cell Culture Techniques/methods , Cell Line , Gene Expression Profiling/methods , Humans , Organoids/cytology , Pluripotent Stem Cells/cytology , RNA-Seq/methods , Reverse Transcriptase Polymerase Chain Reaction
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