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1.
Opt Express ; 16(14): 10066-76, 2008 Jul 07.
Article in English | MEDLINE | ID: mdl-18607414

ABSTRACT

Acousto-optic deflectors (AOD) are promising ultrafast scanners for non-linear microscopy. Their use has been limited until now by their small scanning range and by the spatial and temporal dispersions of the laser beam going through the deflectors. We show that the use of AOD of large aperture (13mm) compared to standard deflectors allows accessing much larger field of view while minimizing spatio-temporal distortions. An acousto-optic modulator (AOM) placed at distance of the AOD is used to compensate spatial and temporal dispersions. Fine tuning of the AOM-AOD setup using a frequency-resolved optical gating (GRENOUILLE) allows elimination of pulse front tilt whereas spatial chirp is minimized thanks to the large aperture AOD.


Subject(s)
Acoustics , Microscopy/instrumentation , Microscopy/methods , Optics and Photonics/instrumentation , Equipment Design , Lasers , Photons , Refractometry/instrumentation , Refractometry/methods , Time Factors
2.
J Neurosci Methods ; 154(1-2): 161-74, 2006 Jun 30.
Article in English | MEDLINE | ID: mdl-16458361

ABSTRACT

Two-photon scanning microscopy (TPSM) is a powerful tool for imaging deep inside living tissues with sub-cellular resolution. The temporal resolution of TPSM is however strongly limited by the galvanometric mirrors used to steer the laser beam. Fast physiological events can therefore only be followed by scanning repeatedly a single line within the field of view. Because acousto-optic deflectors (AODs) are non-mechanical devices, they allow access at any point within the field of view on a microsecond time scale and are therefore excellent candidates to improve the temporal resolution of TPSM. However, the use of AOD-based scanners with femtosecond pulses raises several technical difficulties. In this paper, we describe an all-digital TPSM setup based on two crossed AODs. It includes in particular an acousto-optic modulator (AOM) placed at 45 degrees with respect to the AODs to pre-compensate for the large spatial distortions of femtosecond pulses occurring in the AODs, in order to optimize the spatial resolution and the fluorescence excitation. Our setup allows recording from freely selectable point-of-interest at high speed (1kHz). By maximizing the time spent on points of interest, random-access TPSM (RA-TPSM) constitutes a promising method for multiunit recordings with millisecond resolution in biological tissues.


Subject(s)
Diagnostic Imaging/instrumentation , Microscopy, Confocal/instrumentation , Microscopy, Fluorescence/instrumentation , Action Potentials/physiology , Algorithms , Animals , Calcium Signaling/physiology , Cells, Cultured , Hippocampus/cytology , Hippocampus/physiology , Lasers , Models, Theoretical , Neurons/physiology , Pyramidal Cells/physiology , Rats , Signal Processing, Computer-Assisted
3.
Eur Phys J E Soft Matter ; 12(4): 605-15, 2003 Dec.
Article in English | MEDLINE | ID: mdl-15007758

ABSTRACT

RNA secondary structures of increasing complexity are probed combining single molecule stretching experiments and stochastic unfolding/refolding simulations. We find that force-induced unfolding pathways cannot usually be interpreted by solely invoking successive openings of native helices. Indeed, typical force-extension responses of complex RNA molecules are largely shaped by stretching-induced, long-lived intermediates including non-native helices. This is first shown for a set of generic structural motifs found in larger RNA structures, and then for Escherichia coli's 1540-base long 16S ribosomal RNA, which exhibits a surprisingly well-structured and reproducible unfolding pathway under mechanical stretching. Using out-of-equilibrium stochastic simulations, we demonstrate that these experimental results reflect the slow relaxation of RNA structural rearrangements. Hence, micromanipulations of single RNA molecules probe both their native structures and long-lived intermediates, so-called "kinetic traps", thereby capturing -at the single molecular level- the hallmark of RNA folding/unfolding dynamics.


Subject(s)
Micromanipulation/methods , Models, Molecular , Nucleic Acid Conformation , Nucleic Acid Denaturation , Physical Stimulation/methods , RNA/chemistry , RNA/ultrastructure , Computer Simulation , Elasticity , Escherichia coli/chemistry , RNA, Ribosomal, 16S/chemistry , Reproducibility of Results , Sensitivity and Specificity , Stress, Mechanical
4.
Phys Rev E Stat Nonlin Soft Matter Phys ; 63(5 Pt 1): 051903, 2001 May.
Article in English | MEDLINE | ID: mdl-11414929

ABSTRACT

Experiments on single DNA molecules have shown that abrupt transitions between states of different extensions can be driven by stretching and twisting. Here we show how a simple statistical-mechanical model can be used to globally fit experimental force-extension data of Léger et al. [Phys. Rev. Lett. 83, 1066 (1999)], over a wide range of DNA molecule twisting. We obtain the mean twists, extensions, and free energies of the five DNA states found experimentally. We also predict global force-torque and force-linking number phase diagrams for DNA. At zero force, the unwinding torque for zero-force structural transition from the double helix to an unwound structure is found to be approximately -2kBT, while the right-handed torque needed to drive DNA to a highly overwound state approximately 7kBT.


Subject(s)
DNA/chemistry , Nucleic Acid Conformation , Base Pairing , Biophysical Phenomena , Biophysics , Hydrogen Bonding , Models, Statistical , Nucleic Acid Denaturation , Thermodynamics , Torque
5.
Proc Natl Acad Sci U S A ; 95(21): 12295-9, 1998 Oct 13.
Article in English | MEDLINE | ID: mdl-9770480

ABSTRACT

Most genetic regulatory mechanisms involve protein-DNA interactions. In these processes, the classical Watson-Crick DNA structure sometimes is distorted severely, which in turn enables the precise recognition of the specific sites by the protein. Despite its key importance, very little is known about such deformation processes. To address this general question, we have studied a model system, namely, RecA binding to double-stranded DNA. Results from micromanipulation experiments indicate that RecA binds strongly to stretched DNA; based on this observation, we propose that spontaneous thermal stretching fluctuations may play a role in the binding of RecA to DNA. This has fundamental implications for the protein-DNA binding mechanism, which must therefore rely in part on a combination of flexibility and thermal fluctuations of the DNA structure. We also show that this mechanism is sequence sensitive. Theoretical simulations support this interpretation of our experimental results, and it is argued that this is of broad relevance to DNA-protein interactions.


Subject(s)
DNA, Viral/metabolism , DNA-Binding Proteins/metabolism , Nucleic Acid Conformation , Rec A Recombinases/metabolism , Bacteriophage lambda/chemistry , DNA, Viral/chemistry , Kinetics , Monte Carlo Method , Protein Binding , Temperature
6.
Rev Eur Migr Int ; 13(2): 7-24, 1997.
Article in French | MEDLINE | ID: mdl-12348354

ABSTRACT

PIP: The author provides estimates of the number of foreigners in the French labor market during the period 1990-1992, using a new methodology. "Between 1990 and [January 1,] 1993, a total of 100,000 foreigners holding a residence permit entered every year on the labour market, [amounting] to 15% of all entries (French and foreigners). As was the case at the end of the 1970s, only one third of them entered, as workers, in the labour market. These results confirm the relevance of the methodology used." (EXCERPT)^ieng


Subject(s)
Emigration and Immigration , Employment , Statistics as Topic , Demography , Developed Countries , Economics , Ethnicity , Europe , France , Health Workforce , Population , Population Characteristics , Research , Social Class , Socioeconomic Factors
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