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1.
Bioorg Chem ; 148: 107427, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38728911

ABSTRACT

Histone acetyltransferase CREB-binding protein (CBP) and its homologous protein p300 are key transcriptional activators that can activate oncogene transcription, which present promising targets for cancer therapy. Here, we designed and synthesized a series of p300/CBP targeted low molecular weight PROTACs by assembling the covalent ligand of RNF126 E3 ubiquitin ligase and the bromodomain ligand of the p300/CBP. The optimal molecule A8 could effectively degrade p300 and CBP through the ubiquitin-proteasome system in time- and concentration-dependent manners, with half-maximal degradation (DC50) concentrations of 208.35/454.35 nM and 82.24/79.45 nM for p300/CBP in MV4-11 and Molm13 cell lines after 72 h of treatment. And the degradation of p300/CBP by A8 is dependent on the ubiquitin-proteasome pathway and its simultaneous interactions with the target proteins and RNF126. A8 exhibits good antiproliferative activity in a series of p300/CBP-dependent cancer cells. It could transcriptionally inhibit the expression of c-Myc, induce cell cycle arrest in the G0/G1 phase and apoptosis in MV4-11 cells. This study thus provided us a new chemotype for the development of drug-like PROTACs targeting p300/CBP, which is expected to be applied in cancer therapy.


Subject(s)
Antineoplastic Agents , Cell Proliferation , Dose-Response Relationship, Drug , Drug Design , Drug Screening Assays, Antitumor , Ubiquitin-Protein Ligases , p300-CBP Transcription Factors , Humans , Ubiquitin-Protein Ligases/metabolism , Ubiquitin-Protein Ligases/antagonists & inhibitors , p300-CBP Transcription Factors/metabolism , p300-CBP Transcription Factors/antagonists & inhibitors , Antineoplastic Agents/pharmacology , Antineoplastic Agents/chemical synthesis , Antineoplastic Agents/chemistry , Cell Proliferation/drug effects , Structure-Activity Relationship , Molecular Structure , Apoptosis/drug effects , Cell Line, Tumor
2.
Chemphyschem ; 25(4): e202300563, 2024 Feb 16.
Article in English | MEDLINE | ID: mdl-38086786

ABSTRACT

Thermodynamic state functions are fundamental quantities in many fields. In this work, the van der Waals (vdW) equation of state and calculation formulas of state functions are derived with statistical thermodynamic method in three-dimensional (3D) and two-dimensional (2D) spaces. The heat capacity at constant volume (CV,m ) or area (CA,m ) is exactly the same as that of ideal gas, but the heat capacity at constant pressure (Cp,m ) and other state functions are different from those of ideal gas. The vdW equation of state is a cubic equation, which leads to the fact that the entropy and free energy changes of vdW fluid can be expressed as explicit expressions of volume rather than pressure. Therefore, the adsorbate entropy at constant area can still be theoretically proven to have a linear relationship with the gas-phase entropy at constant volume. However, the linear correlation between it and gas-phase entropy at constant pressure is no longer strictly true in theory. In addition, since the vdW equation of state is applicable to both gas and liquid, the linear correlation between adsorbate entropy and liquid-phase entropy can also be found. At last, the reference state for real gas or fluid at a constant molar volume is suggested.

3.
J Colloid Interface Sci ; 658: 74-89, 2024 Mar 15.
Article in English | MEDLINE | ID: mdl-38100978

ABSTRACT

In this study, we present the successful development of a unique photo-Fenton catalyst, 1T-2H MoS2@TP/PPy (MTP), achieved through the coating of a copolymer of tea polyphenol (TP) and polypyrrole (PPy) onto the surface of heterophase molybdenum disulfide (1T-2H MoS2). This innovative approach involves the integration of hydrothermal synthesis with copolymerization techniques. Our strategy utilizes nanoflower-like 1T-2H MoS2 as the foundational framework, which is then enveloped in TP and PPy copolymer. This innovative approach involves the integration of hydrothermal synthesis with copolymerization techniques. Our strategy utilizes nanoflower-like 1T-2H MoS2 as the foundational framework, which is then enveloped in TP and PPy copolymer. This distinctive architecture demonstrates exceptional catalytic performance owing to the hetero-phase entanglement of 1T-2H MoS2, which provides a diverse array of active sites. The coupled structure of TP and iron (TP-Fe2+/Fe3+) effectively overcome the limitation associated with the iron source. The incorporation of PPy not only reduces the recombination of photogenerated electron-hole pairs but also enhances the stability of 1T-2H MoS2. Remarkably, our experiments on the degradation of methylene blue (MB) and tetracycline (TC) degradation demonstrate that TP-Fe2+/Fe3+ significantly expands the pH applicability range of the MTP composite catalyst. Additionally, we examine several factors, including different catalysts, H2O2 addition, variations in light intensity, solution pH, temperature fluctuations, and the role of active species, to comprehensively understand their impact on the photo-Fenton degradation process. In conclusion, MTP composite exhibits robust catalytic stability and demonstrates a broad pH utilization range in the photo-Fenton oxidation process, highlighting its promising potential for a wide range of applications.

4.
Polymers (Basel) ; 15(19)2023 Sep 27.
Article in English | MEDLINE | ID: mdl-37835949

ABSTRACT

MoS2 has garnered considerable attention as an exceptional co-catalyst that is capable of significantly enhancing the efficiency of H2O2 decomposition in advanced oxidation processes (AOPs). This improvement allows for a reduction in the required amounts of H2O2 and Fe2+. In this study, we investigated the cyclic durability of photo-Fenton catalysts, focusing on the degradation of pollutants through the introduction of PPy into heterogeneous 1T-2H MoS2 units. The resulting photothermal-Fenton catalysts, comprising non-ferrous Fenton catalysts, demonstrated excellent degradation performance for simulated pollutants. In comparison with 1T-2H MoS2, the PPy@1T-2H MoS2 composite exhibited remarkable stability and photothermal enhancement in the photo-Fenton degradation of methylene blue (MB) under visible light irradiation. The photo-Fenton reaction efficiently degraded contaminants, achieving 99% removal within 5 min and 99.8% removal within 30 min. Moreover, the co-catalyst complex displayed enhanced cyclic stability during the photo-Fenton reaction, with a contaminant removal efficiency of 92%, even after the 13th cyclic test. The combined effects of PPy and 1T-2H MoS2 demonstrated improved efficiency in both photocatalytic and photo-Fenton catalytic reactions. Furthermore, PPy@1T-2H MoS2 exhibited outstanding performance in the photothermal evaporation of water, achieving an efficiency of 86.3% under one solar irradiation.

5.
Front Cell Dev Biol ; 11: 1199122, 2023.
Article in English | MEDLINE | ID: mdl-37283946

ABSTRACT

Introduction: Acute respiratory distress syndrome (ARDS) remains a major clinical challenge for patients in intensive care units. Determining the differential mechanisms underlying ARDS with different etiologies is a key goal to improve the effectiveness of ARDS therapy. Despite growing evidence that different immune cell types are involved in ARDS, the role of altered immune cell subpopulations in disease progression is unelucidated. Methods: In this study, we combined scRNA-seq and bulk-level sequencing to analyze the transcriptomes of peripheral blood mononuclear cells from healthy volunteers and patients with septic ARDS (sep-ARDS) and pneumonic ARDS (PNE-ARDS). Results: Our data revealed differential alterations at the cellular and molecular levels and within biological signaling pathways in ARDS with different etiologies. The dynamics of neutrophils, macrophages (Macs), classical dendritic cells (cDCs), myeloid-derived suppressive cells (MDSCs), and CD8+ T cells varied significantly among groups of different samples, with neutrophils and cDCs at higher, and Macs at significantly lower, amounts in the patients with sep-ARDS. Furthermore, MDSCs were highly enriched only in the sep-ARDS patients, whereas a higher abundance of CD8+ T cells was observed in patients with PNE-ARDS. In addition, these cell subpopulations were found to be significantly involved in apoptosis, inflammatory, and immune-related pathways. In particular, a significant enhancement of the oxidative stress response was observed in the neutrophil subpopulation. Conclusion: Our study shows that the composition of cells involved in the main peripheral circulation differs in patients with ARDS with different etiologies. Studying the role and mechanism of action of these cells during ARDS will provide new opportunities for the treatment of this condition.

6.
Nanomaterials (Basel) ; 13(11)2023 May 31.
Article in English | MEDLINE | ID: mdl-37299675

ABSTRACT

It is important to understand the mechanical properties of diamond-like carbon (DLC) for use not only in frictionand wear-resistant coatings, but also in vibration reduction and damping increase at the layer interfaces. However, the mechanical properties of DLC are influenced by the working temperature and its density, and the applications of DLC as coatings are limited. In this work, we systematically studied the deformation behaviors of DLC under different temperatures and densities using compression and tensile testing of DLC by molecular dynamics (MD) methods. In our simulation results, the values of tensile stress and compressive stress decreased and tensile strain and compressive strain increased as the temperature increased from 300 K to 900 K during both tensile and compressive processes, indicating that the tensile stress and tensile strain depend on the temperature. During the tensile simulation, Young's modulus of DLC models with different densities had a different sensitivity to the increase in temperature, and the DLC model with a high density was more sensitive than that with a low density, which was not seen in the compression process. We conclude that the Csp3-Csp2 transition leads to tensile deformation, while the Csp2-Csp3 transition and relative slip dominate compressive deformation.

7.
Bioorg Chem ; 132: 106356, 2023 03.
Article in English | MEDLINE | ID: mdl-36669357

ABSTRACT

The mammalian target of rapamycin (mTOR) has been proved to be an effective target for cancer therapy. Two kinds of mTOR inhibitors, the rapalogs and mTOR kinase inhibitors (TORKi), have been developed and clinically validated in several types of malignancies. Compared with rapalogs, TORKi can exert better antitumor activity by inhibiting both mTORC1 and mTORC2, but the clinical development of current TORKi candidates has been relative slow, more TORKi with novel scaffold need to be developed to expand the current pipelines. In this study, a series of 9-methyl-9H-purine and thieno[3, 2-d]pyrimidine derivatives were designed, synthesized and biological evaluation. Most of these compounds exhibited good mTOR kinase inhibitory activity and selectivity over PI3Kα. Subsequent antiproliferative assay allowed us to identify the lead compound 15i, which display nanomolar to low micromolar IC50s against six human cancer cell lines. 15i could induce cell cycle arrest of MCF-7, PC-3 and A549 cells at the G0/G1 phase and suppress the migration and invasion of these cancer cells by suppressing the phosphorylation of AKT and P70S6 kinase. It could also regulate autophagy-related proteins to induce autophagy. Therefore, 15i would be a starting point for the development of new TORKi as anticancer drug.


Subject(s)
Antineoplastic Agents , Neoplasms , Humans , MTOR Inhibitors , Protein Kinase Inhibitors , TOR Serine-Threonine Kinases/metabolism , Neoplasms/drug therapy , Purines/pharmacology , Pyrimidines , Cell Proliferation , Cell Line, Tumor , Drug Screening Assays, Antitumor , Structure-Activity Relationship
8.
Polymers (Basel) ; 15(23)2023 Nov 22.
Article in English | MEDLINE | ID: mdl-38231915

ABSTRACT

With the increasing popularity of wearable devices, flexible electronics with a negative permittivity property have been widely applied to wearable devices, sensors, and energy storage. In particular, a low-frequency dispersion negative permittivity in a wide frequency range can effectively contribute to the stable working performance of devices. In this work, polyvinylidene fluoride (PVDF) was selected as the flexible matrix, and copper nanowires (CuNWs) were used as the conductive functional filler to prepare a flexible CuNWs/PVDF composite film with a low-frequency dispersion negative permittivity. As the content of CuNWs increased, the conductivity of the resulting composites increased sharply and presented a metal-like behavior. Moreover, the negative permittivity consistent with the Drude model was observed when CuNWs formed a percolative network. Meanwhile, the negative permittivity exhibited a low-frequency dispersion in the whole test frequency range, and the fluctuation of the permittivity spectra was relatively small (-760 to -584) at 20 kHz-1 MHz. The results revealed that the high electron mobility of CuNWs is reasonable for the low-frequency dispersion of negative permittivity. CuNWs/PVDF composite films with a frequency-independent negative permittivity provide a new idea for the development of flexible wearable electronic devices.

9.
Pathogens ; 11(8)2022 Jul 31.
Article in English | MEDLINE | ID: mdl-36014987

ABSTRACT

To study the characteristics of HIV pretreatment drug resistance (PDR) and acquired drug resistance (ADR) in Hefei, a cross-sectional survey was used to collect 816 samples from newly reported HIV infections from 2017 to 2020 and 127 samples from HIV infections with virological failure from 2018 to 2019 in Hefei. HIV drug resistance levels and drug resistance mutations were interpreted using the Stanford Drug Resistance Database. Molecular networks were constructed by HIV-TRACE. Among the newly reported infections in Hefei, the prevalence of PDR was 6.4% (52/816). The drug resistance mutations were mainly V179E/D/T (12.4%), K103N (1.3%), and V106I/M (1.3%). In addition, it was found that the CRF55_01B subtype had a higher drug resistance rate than other subtypes (p < 0.05). Molecular network analysis found that K103N and V179E may be transmitted in the cluster of the CRF55_01B subtype. The prevalence of ADR among HIV infections with virological failure was 38.6% (49/127), and the drug resistance mutations were mainly M184V (24.4%), K103N/S (15.7%), Y181C (11.0%), G190S/A/E (10.2%), and V106M/I (10.2%). The molecular network was constructed by combining HIV infections with virological failure and newly reported infections; M184V and Y181C may be transmitted between them. The chi-square trend test results indicated that the higher the viral load level, the greater the number of newly reported infections linked to the infections with virological failure in the molecular network. In conclusion, interventions should focus on infections of the CRF55_01B subtype to reduce the transmission of drug-resistant strains. However, improving the treatment effect of HIV infections is beneficial for reducing the second-generation transmission of HIV.

10.
J Inorg Biochem ; 235: 111931, 2022 Oct.
Article in English | MEDLINE | ID: mdl-35868066

ABSTRACT

Four dinuclear bismuth(III) Schiff-base complexes bearing Schiff-base ligands have been synthesized and structurally characterized by single-crystal X-ray diffraction, elemental analysis, and spectral techniques (FT-IR, NMR and MS). The analytical data reveal the bismuth(III) complexes possess 1:1 metal-ligand ratios. In vitro biological studies have revealed that bismuth(III) complexes displayed much higher antibacterial and antitumor activities than their parent ligands, which involves two gram-negative (S. aureus, B. subtili) and two gram-positive (E. coli, P. aeruginosa) bacteria, and human gastric cancer SNU-16 cells. The power-time curves of S. pombe exposed to tested compounds were detected by bio-microcalorimetry. Some thermokinetic parameters (k, Pmax,tG and Qtotal) were derived based on the metabolic power-time curves, and their quantitative relationships with the concentrations (c) were further discussed.


Subject(s)
Coordination Complexes , Schiff Bases , Anti-Bacterial Agents/chemistry , Bismuth/pharmacology , Coordination Complexes/chemistry , Escherichia coli , Humans , Isoniazid/pharmacology , Ligands , Microbial Sensitivity Tests , Schiff Bases/chemistry , Spectroscopy, Fourier Transform Infrared , Staphylococcus aureus
11.
ACS Omega ; 7(7): 5751-5763, 2022 Feb 22.
Article in English | MEDLINE | ID: mdl-35224335

ABSTRACT

Herein, N,P-rich carbon/carbon/Co2P2O7 hollow nanotubes with a multilayered wall structure were successfully fabricated for the ORR electrocatalyst. The hollow tube structure catalysts were obtained by carbonizing Co2P2O7/C coated with the phytate-doped PANI. The Co2P2O7/C was obtained by phosphorylating a basic cobalt carbonate with phytic acid (PA). Onset and positive half-wave potentials were measured at 0.90 and 0.84 V, respectively, with a diffusion-limited current density of 4.58 mA/cm2. Effect of the thickness of polyaniline (PANI) in the electrocatalyst precursor was also investigated. The specific surface area as well as the content of graphitic N altered as the time of PANI polymerization increased, resulting in remarkably different catalytic activities. This study of hollow nanotube catalysts exhibits efficient noble-metal-free oxygen reduction reaction electrocatalysts for other chemical systems, which will provide abundant electrochemical active centers and sufficient energy.

12.
Pathogens ; 10(12)2021 Nov 29.
Article in English | MEDLINE | ID: mdl-34959509

ABSTRACT

Hefei, Anhui province, is one of the cities in the Yangtze River Delta, where many people migrate to Jiangsu, Zhejiang and Shanghai. High migration also contributes to the HIV epidemic. This study explored the HIV prevalence in Hefei to provide a reference for other provinces and assist in the prevention and control of HIV in China. A total of 816 newly reported people with HIV in Hefei from 2017 to 2020 were recruited as subjects. HIV subtypes were identified by a phylogenetic tree. The most prevalent subtypes were CRF07_BC (41.4%), CRF01_AE (38.1%) and CRF55_01B (6.3%). Molecular networks were inferred using HIV-TRACE. The largest and most active transmission cluster was CRF55_01B in Hefei's network. A Chinese national database (50,798 sequences) was also subjected to molecular network analysis to study the relationship between patients in Hefei and other provinces. CRF55_01B and CRF07_BC-N had higher clustered and interprovincial transmission rates in the national molecular network. People with HIV in Hefei mainly transmitted the disease within the province. Finally, we displayed the epidemic trend of HIV in Hefei in recent years with the dynamic change of effective reproductive number (Re). The weighted overall Re increased rapidly from 2012 to 2015, with a peak value of 3.20 (95% BCI, 2.18-3.85). After 2015, Re began to decline and remained stable at around 1.80. In addition, the Re of CRF55_01B was calculated to be between 2.0 and 4.0 in 2018 and 2019. More attention needs to be paid to the rapid spread of CRF55_01B and CRF07_BC-N strains among people with HIV and the high Re in Hefei. These data provide necessary support to guide the targeted prevention and control of HIV.

13.
ACS Appl Mater Interfaces ; 13(11): 13044-13054, 2021 Mar 24.
Article in English | MEDLINE | ID: mdl-33595268

ABSTRACT

Metal cocatalyst loading is one of the most widely explored strategies in promoting photocatalytic solar energy conversion. Engineering surface-active facets of metal cocatalyst and exploring how they modulate the reactivity is crucial for the further development of advanced photocatalysts. In this work, through controlled hybridization of two-dimensional (2D) TiO2 nanosheets with well-designed Pd nanocube (Pd NC) with exposed {100} facet and Pd nano-octahedron (NO) with exposed {111} facet, we unravel the distinct crystal facet effect of Pd cocatalyst in promoting the selective hydrogenation of nitroarenes to amines of TiO2 photocatalyst. The activity tests show that the Pd NO with {111} facet is a more efficient cocatalyst than the Pd NC with exposed {100} facet. The prepared TiO2-Pd NO composite displays a 900% enhancement of photocatalytic hydrogenation rate in comparison with bare TiO2, while the TiO2-Pd NC sample only shows a 200% photoactivity enhancement. Microscopic mechanism study discloses that the distinctive photoactivity improvement of Pd NO is ascribed to the concurrent modulation of the Schottky barrier height and enrichment of surface reactants: (i) the Pd NO with a lower Fermi level could result in steeper band bending of TiO2 (i.e., higher Schottky barrier) than the Pd NC, which is more efficient in boosting interfacial separation and inhibiting the recombination of photoexcited charge pairs; and (ii) the {111} facet of Pd has higher nitroarenes adsorption ability and especially stronger hydrogen enrichment capability, thus accelerating the surface hydrogenation process and contributing to a higher reaction rate. This work emphasizes the rational facet control of cocatalysts for enhancing the photocatalytic hydrogenation performance.

14.
Phys Chem Chem Phys ; 23(4): 2792-2804, 2021 Feb 04.
Article in English | MEDLINE | ID: mdl-33470256

ABSTRACT

Selective oxidation of propene to acrolein and acrylic acid has been applied in industry for many years. In this work, the density functional theory plus U (DFT+U) method was performed to study the hydrogen abstraction of propene on the MoO3(010) surface. From the most stable chemisorbed propene (di-σ propene), the allyl intermediate is difficult to produce on a perfect MoO3(010) surface because of the high barrier. In general, the barriers of the second hydrogen abstraction are much lower than those of the first one. The conclusion from our slab model calculations is consistent with the experimental results. It is found that the (3 + 2) mechanism exhibits lower barriers than the (5 + 2) mechanism. Oxygen defects facilitate the first dehydrogenation significantly, and π-allyl converts to σ-allyl favorably on defects, in agreement with a previous experimental study. The present study indicates that increasing the surface oxygen defects might be an effective way to promote the activity of MoO3 to propene oxidation.

15.
Phys Chem Chem Phys ; 22(23): 13129-13135, 2020 Jun 21.
Article in English | MEDLINE | ID: mdl-32490451

ABSTRACT

Unraveling the formation mechanism of hydroxyl radicals (OH˙) is one of the outstanding issues in photocatalytic reactions, where 5,5-dimethyl-1-pyrroline N-oxide (DMPO) is widely utilized as a trapping agent to detect OH˙ radicals in experiments. In this study, we carry out density functional theory calculations to reveal the origin and formation process of OH˙ radicals by investigating the interaction of water with DMPO on a rutile TiO2(110) surface. Our results clearly show that the OH˙ radicals trapped by DMPO stem from water upon illumination. The charge compensation mechanism dominates the formation of DMPO-OH from the reaction between DMPO and water on the rutile TiO2(110) surface. These findings provide new insights into the photocatalytic mechanism and may achieve new frontiers in photocatalytic research.

16.
Materials (Basel) ; 12(19)2019 Sep 23.
Article in English | MEDLINE | ID: mdl-31547542

ABSTRACT

The diffusion coatings were deposited on commercially pure Ti and Ti-6Al-4V alloy at up to 1000 °C for up to 10 h using the pack cementation method. The pack powders consisted of 4 wt% Al (Al reservoir) and 4 wt% NH4Cl (activator) which were balanced with Al2O3 (inert filler). The growth kinetics of coatings were gravimetrically measured by a high precision balance. The aluminised specimens were characterised by means of scanning electron microscopy (SEM), energy dispersive spectrometer (EDS) and X-ray diffraction (XRD). At the early stages of deposition, a TiO2 (rutile) scale, other than aluminide coating, was developed on both materials at <900 °C. As the experimental temperature arose above 900 °C, the rutile layer became unstable and reduced to the low oxidation state of Ti oxides. When the temperature increased to 1000 °C, the TiO2 scale dissociated almost completely and the aluminide coating began to develop. After a triple-layered coating was generated, the coating growth was governed by the outward migration of Ti species from the substrates and obeyed the parabolic law. The coating formed consisted of an outer layer of Al3Ti, a mid-layer of Al2Ti and an inner layer of AlTi. The outer layer of Al3Ti dominated the thickness of the aluminide coating.

17.
Biomed Res Int ; 2019: 7267816, 2019.
Article in English | MEDLINE | ID: mdl-31309113

ABSTRACT

BACKGROUND: Vestibular schwannoma (VS) is benign, slow-growing brain tumor that negatively impacts patient quality of life, which may cause even death. This study aimed to explore key genes and microRNAs (miRNAs) associated with VS. METHODS: The mRNA and miRNA expression profiles of VS downloaded from Gene Expression Omnibus (GEO) database were included in this study to perform an integrated analysis. The differentially expressed mRNAs (DEmRNAs) and miRNAs (DEmiRNAs) were identified. Then, functional annotation and protein-protein interaction networks (PPI) of DEmRNAs were constructed. DEmiRNA-target DEmRNAs analysis and functional annotation of DEmiRNA-target DEmRNAs were performed. RESULTS: A total of 2627 DEmRNAs (1194 upregulated and 1433 downregulated DEmRNAs) and 21 DEmiRNAs (12 upregulated and 9 downregulated DEmiRNAs) were identified. ISG15, TLE1, and XPC were three hub proteins of VS-specific PPI network. A total of 2970 DEmiRNAs-DEmRNAs pairs were obtained. Among which, hsa-miR-181a-5p, hsa-miR-106-5p, and hsa-miR-34a-5p were the top three DEmiRNAs that covered most DEmRNAs. The functional annotation of DEmiRNA-target DEmRNAs revealed that the DEmiRNA-target DEmRNAs were significantly enriched in cGMP-PKG signaling pathway, adrenergic signaling in cardiomyocytes, and pathways in cancer. CONCLUSION: The results of this present study may provide a comprehensive understanding for the roles of DEmRNAs and DEmiRNAs in the pathogenesis of VS and developing potential biomarkers of VS.


Subject(s)
Gene Expression Regulation, Neoplastic/genetics , MicroRNAs/genetics , Neuroma, Acoustic/genetics , RNA, Messenger/genetics , Down-Regulation/genetics , Gene Expression Profiling/methods , Humans , Myocytes, Cardiac/physiology , Protein Interaction Maps/genetics , Signal Transduction/genetics , Up-Regulation/genetics
18.
BMC Infect Dis ; 19(1): 566, 2019 Jun 28.
Article in English | MEDLINE | ID: mdl-31253127

ABSTRACT

BACKGROUND: To infer transmission direction of a HIV transmission chain is helpful not only in legal jurisdiction but also in precise intervention to prevent HIV spread. Recently, the direction of transmission is inferred by whether paraphyletic-monophyletic (PM) or a combination of paraphyletic and polyphyletic (PP) topologies is observed or not between the sequences of source and recipient in the phylogenetic tree. However, paraphyly between them often declines over time and may disappear between spouses due to bidirectional transmission after primary infection. In this study, our aim is to test the reliability of inferring HIV transmission direction between epidemiologically linked HIV-1 positive couples using whether or not paraphyly is observed in phylogenetic tree. METHODS: HIV quasi-species were sequenced using PCR product clones, and then Bayesian analysis of molecular sequences with MCMC was employed to construct phylogenetic relationship of env, gag, pol gene fragments of HIV-1 positive couples using BEAST software. RESULTS: Our results showed that all sequences of seven couples except pol sequences of couple 12 and 13 form their own monophyletic cluster in phylogenetic tree including the closest control sequences from GenBank or other studies on local samples, which are supported by significant Bayesian posterior probabilities more than 0.9932. Of seven couples, paraphyly is only observed in phylogenetic tree constructed with env and pol gene sequences of three couples and gag gene sequences of four couples. Paraphyly is not observed in half of HIV positive couples. Pol sequences of couple 13 is separated by Blast selected controls; pol sequences of couple 12 in phylogenetic tree is supported by a lower Bayesian posterior value. CONCLUSION: Paraphyly relationship between sequences of donator and recipient is only observed among partial HIV-1 positive couples with epidemiological link. Phylogenetic relationship is not always the same when various gene regions of HIV are used to conduct phylogenetic analysis. The combination of phylogenetic analysis based on various gene regions of HIV and enough epidemiology investigation is essential when inferring transmission direction of HIV in a transmission chain or in one couple. However, while observed paraphyly can be used to infer transmission direction in HIV-1 positive couple, no observed paraphyly cannot deny it.


Subject(s)
HIV Infections/transmission , HIV-1/genetics , Quasispecies , Bayes Theorem , Female , HIV Infections/epidemiology , HIV Infections/virology , HIV-1/classification , Humans , Male , Phylogeny , Polymerase Chain Reaction , RNA, Viral/genetics , RNA, Viral/isolation & purification , RNA, Viral/metabolism , Sexual Behavior , gag Gene Products, Human Immunodeficiency Virus/classification , pol Gene Products, Human Immunodeficiency Virus/classification
19.
Polymers (Basel) ; 11(5)2019 May 10.
Article in English | MEDLINE | ID: mdl-31083352

ABSTRACT

The corrosion behavior of zinc-rich epoxy primers or paints (ZRPs) with different conducting polyaniline-grafted graphene (PANI/Gr) contents was investigated. Conductivity of the formed PANI/Gr nanosheets was significantly improved by employing the Gr as the inner template to synthesize the PANI. The protective properties and electrochemical behavior of coatings with artificial defects were investigated by monitoring the free corrosion potential versus time and by using localized electrochemical impedance spectroscopy (LEIS). A synergetic enhancement of the physical barrier role of the coating and the zinc sacrificial cathodic protection was achieved in the case of ZRP including PANI/Gr nanosheets. In addition, the ZRP mixed with the PANI/Gr at a content of 0.6% exhibited the best anticorrosion performance across the range of investigated PANI/Gr contents.

20.
Mol Med Rep ; 19(5): 3855-3863, 2019 May.
Article in English | MEDLINE | ID: mdl-30864741

ABSTRACT

Chronic rhinosinusitis with nasal polyps (CRSwNP) is one of the most prevalent chronic diseases. In patients with CRSwNP, the present study performed comprehensive bioinformatics analyses to characterize the transcriptome profiles of mRNAs and long non­coding RNAs (lncRNAs). A total of 265 differentially expressed lncRNAs and 994 mRNAs were identified. The majority of up­ and downregulated differentially expressed genes were significantly enriched in the biological process of 'signal transduction'. The most significantly enriched molecular function was 'protein binding' and the most significantly enriched cellular component was 'membrane'. Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis led to identification of several significantly enriched pathways [false discovery rate (FDR)<0.05], including 'cytokine­cytokine receptor interaction' (FDR=3.94x1016) and 'cell adhesion molecules' (CAMs) (FDR=1.28x10­5). Key differentially expressed lncRNAs were identified, including lncRNA XLOC_010280, which regulates chemokine (C­C motif) ligand 18 (CCL18) and inflammation, and RP11­798M19.6, which regulates polypeptide N­acetylgalactosaminyltransferase 7 (GALNT7) and cell proliferation. Based on the results of reverse transcription­quantitative polymerase chain reaction, except for CCL8, neural precursor cell expressed developmentally downregulated gene 4­like and GALNT7, the expression of 3 other selected genes was consistent with the results of integrated analysis. The results of the present study provide a foundation for future investigations into mRNAs and lncRNAs as diagnostic and therapeutic targets in CRSwNP.


Subject(s)
Gene Expression Profiling , Genome, Human , Nasal Polyps/metabolism , RNA, Long Noncoding/genetics , RNA, Messenger/metabolism , Rhinitis/metabolism , Sinusitis/metabolism , Case-Control Studies , Chronic Disease , Computational Biology , Gene Regulatory Networks , Humans , Nasal Polyps/pathology , Protein Interaction Maps , RNA, Messenger/genetics , Rhinitis/genetics , Rhinitis/pathology , Signal Transduction , Sinusitis/genetics , Sinusitis/pathology
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