Bacterial Diversity and Vertical Distribution Patterns in Sandy Sediments: A Study on the Bacterial Community Structure Based on Environmental Factors in Tributaries of the Yangtze River.

Bacterial diversity and its distribution characteristics in sediments are critical to understanding and revealing biogeochemical cycles in sediments. However, little is known about the relationship between biogeochemistry processes and vertical spatial distribution of bacterial communities in sandy sediments. In this study, we used fluorescence quantitative PCR, high-throughput sequencing technology and statistical analysis to explore the vertical distribution pattern of bacterial community diversity and its influencing factors in sandy sediments of the Yangtze River Basin. The aim is to enrich the understanding of the ecological characteristics and functions of bacteria in river ecosystems. The results showed that both sediment bacterial abundance and diversity showed a gradual decrease from surface to bottom in the vertical distribution. The main environmental factors that influenced the bacterial distribution pattern were pore water dissolved oxygen (DO), total nitrogen (TN) concentration and sediment nitrogen (N) content. The dominant bacterial species, Massilia and Flavobacterium, are suitable for growth and reproduction in high oxygen and nutrient-richer environments, while Limnobacter prefers low oxygen or anaerobic conditions. The vertical distribution pattern of bacteria and its influencing factors in river sandy sediment found in this study differ from the results in mud sediment, which may be related to the larger granular gap between sandy sediment and the lower content of organic matter. The findings of this study further our understanding of the distribution patterns and ecological preferences of microbial communities in river sediments, providing insights into how these communities may adapt to varying environmental conditions.

Sorption kinetics, isotherms and molecular dynamics simulation of 17ß-estradiol onto microplastics.

Microplastic is a new type of pollutant, which can act as a carrier for organic contaminants. It affects the migration and bioavailability of chemicals and potentially threatens the ecology. This work investigated the adsorption kinetics, isotherm and influencing factors of 17ß-estradiol (E2) on three dominate microplastics. Then, used molecular dynamics (MD) simulation to analyze the adsorption mechanism. The results showed that E2 adsorption onto microplastics conformed well to the Pseudo-second-order kinetics and Redlich-Petersen isotherm model. The adsorption capacity of E2 on microplastics was polyethylene (PE) > polypropylene (PP) > polystyrene (PS). The small particle size of microplastics was conducive to the adsorption due to its large specific surface area. The thermodynamic parameters demonstrated the adsorption of E2 was a spontaneous and exothermic process, so low temperature was benefit for the adsorption. The MD simulation results indicated the adsorption of E2 on MPs belonged to surface adsorption. The order of E2 adsorption energy by three microplastics obtained by molecular dynamics simulation is consistent with the experimental results. This work may help to understand the molecular adsorption process and provide a theoretical basis for the combined ecotoxicity of microplastics.

Mechanism of norfloxacin transformation by horseradish peroxidase and various redox mediated by humic acid and microplastics.

The catalysis of HRP coupling with redox mediator was a feasible technology for the transformation of antibiotics. This work screened three effective redox mediators syringaldehyde (SYR), acetosyringone (AS) and p-coumaric acid (PCA) for the norfloxacin (NOR) transformation in HRP/redox mediator system. Then, compared their transformation characteristics under varying conditions. The molecular docking results indicated HRP catalytic mediator was spontaneous, and the absolute value order of free energy between three redox mediators and HRP was consistent with the order of NOR removal in experiment. The presence of humic acid (HA) and polystyrene (PS) microplastics could block the removal of NOR, and the inhibition effect was proportional to the level of HA and PS particles. Seven and six possible intermediate products were identified by using SYR/AS and PCA as redox mediators, respectively, and potential NOR transformation pathways were proposed. SYR and AS treatment had the same transformation products and pathways due to their similar structure, including defluorination, oxidation, cross-coupled with mediator, demethylation and dehydrogenation. While for the PCA group, NOR not only performed the above action (except defluorination), but also underwent decarbonylation. These findings may expand our knowledge of the conversion and fate of fluoroquinolones through HRP coupled with redox mediator in the environment.

Rice straw particles covered with Brevundimonas naejangsanensis DD1 cells can synergistically remove doxycycline from water using adsorption and biotransformation.

Doxycycline (DC) is a second generation tetracycline antibiotic and its occurrence in the aquatic environment due to the discharge of municipal and agricultural wastes has called for technologies to effectively remove DC from water. The objective of the study was to characterize the synergistic benefits of adsorption and biotransformation in removing DC from water using rice straw particles (RSPs) covered with DC degrading bacteria, Brevundimonas naejangsanensis strain DD1. First, optimal experimental conditions were identified for individual processes, i.e., hydrolysis, adsorption, and biotransformation, in terms of their performance of removing DC from water. Then, synergistic effects between adsorption and biotransformation were demonstrated by adding DD1-covered RSPs (DD1-RSPs) to DC-containing solution. Results suggest that DC was quickly adsorbed onto RSPs and the adsorbed DC was subsequently biotransformed by the DD1 cells on RSPs. The adsorption of DC to DD1-RSPs can be well described using the pseudo-second-order kinetics and the Langmuir isotherm. The DD1 cells on RSPs converted DC to several biotransformation products through a series of demethylation, dehydration, decarbonylation, and deamination. This study demonstrated that adsorption and biotransformation could work synergistically to remove DC from water.

Transformation of Tetracycline by Manganese Peroxidase from Phanerochaete chrysosporium.

The negative impacts on the ecosystem of antibiotic residues in the environment have become a global concern. However, little is known about the transformation mechanism of antibiotics by manganese peroxidase (MnP) from microorganisms. This work investigated the transformation characteristics, the antibacterial activity of byproducts, and the degradation mechanism of tetracycline (TC) by purified MnP from Phanerochaete chrysosporium. The results show that nitrogen-limited and high level of Mn2+ medium could obtain favorable MnP activity and inhibit the expression of lignin peroxidase by Phanerochaete chrysosporium. The purified MnP could transform 80% tetracycline in 3 h, and the threshold of reaction activator (H2O2) was about 0.045 mmol L-1. After the 3rd cyclic run, the transformation rate was almost identical at the low initial concentration of TC (77.05-88.47%), while it decreased when the initial concentration was higher (49.36-60.00%). The antimicrobial potency of the TC transformation products by MnP decreased throughout reaction time. We identified seven possible degradation products and then proposed a potential TC transformation pathway, which included demethylation, oxidation of the dimethyl amino, decarbonylation, hydroxylation, and oxidative dehydrogenation. These findings provide a novel comprehension of the role of MnP on the fate of antibiotics in nature and may develop a potential technology for tetracycline removal.

Occurrence and ecotoxicological risk assessment of perfluoroalkyl substances in water of lakes along the middle reach of Yangtze River, China.

Polyfluoroalkyl substances (PFASs) are widely distributed in aquatic environment, and the potential ecological risk of PFASs has become a new challenge in recent years. But there were few integrated studies about the distribution, source appointment and risk assessment of PFASs in water of lakes along the middle reach of Yangtze River, China. Hence, this study investigated the pollution characteristics, source apportionment, ecological risks assessment of eleven PFASs from the surface water in this region. The total concentrations of PFASs (∑PFASs) ranged from 12.43 to 77.44 ng L-1 in this region. The ∑PFASs in Hong and Poyang Lakes were higher than those in Dongting Lake and middle reach of Yangtze River (p < 0.05). The compositions of PFASs in the middle reach of Yangtze River and along three lakes were similar, being with a larger proportion of short-chain PFACs. The food packaging and metal plating sources were identified as the main sources by two models. The total risk quotients (∑RQs) showed the ecological risk for algae in the middle reach of Yangtze River, Dongting and Poyang Lakes were negligible, but the low risk in some sites of Hong Lake. The EDIs of ∑PFASs were much lower than the tolerable daily intake recommended by the European Food Safety Authority. The results of this study were significant for developing effective strategies (e.g. short-chain substitution and restriction) of controlling PFASs pollution in the middle reach of Yangtze River and along lakes.

Biotransformation of doxycycline by Brevundimonas naejangsanensis and Sphingobacterium mizutaii strains.

The fate of doxycycline (DC), a second generation tetracycline antibiotic, in the environment has drawn increasing attention in recent years due to its wide usage. Little is known about the biodegradability of DC in the environment. The objective of this study was to characterize the biotransformation of DC by pure bacterial strains with respect to reaction kinetics under different environmental conditions and biotransformation products. Two bacterial strains, Brevundimonas naejangsanensis DD1 and Sphingobacterium mizutaii DD2, were isolated from chicken litter and characterized for their biotransformation capability of DC. Results show both strains rely on cometabolism to biotransform DC with tryptone as primary growth substrate. DD2 had higher biotransformation kinetics than DD1. The two strains prefer similar pHs (7 and 8) and temperature (30 °C), however, they exhibited opposite responses to increasing background tryptone concentration. While hydrolysis converted DC to its isomer or epimer, the two bacterial strains converted DC to various biotransformation products through a series of demethylation, dehydration, decarbonylation and deamination. Findings from the study can be used to better predict the fate of DC in the environment.

Behaviors of cadmium in rhizosphere soils and its interaction with microbiome communities in phytoremediation.

Phytoremediation of cadmium (Cd) contaminated soils by accumulators or hyperaccumulators has received considerable attention. However, there is still limited information about its migration, dynamic characteristics, and interaction with microbial communities in rhizosphere. In this study, the behaviors of Cd in rhizosphere soils in phytoremediation were carefully studied and illustrated. We find that the migration rate of Cd in rhizosphere is higher than the absorption rate of Cd by roots of plants, and Cd in near-rhizosphere moves sluggishly, and near-rhizosphere soils forms a mass pool of Cd for absorption by plants. Additionally, in tall fescue and Indian mustard treatments, shoot biomasses, total extracted Cd and migration rate of Cd in near-rhizosphere soils were comparable. It suggests that shoot biomasses of plants significantly affect their extraction of heavy metals from rhizosphere soils. Biomasses of bacteria significantly increased after phytoremediation, and structures of microbiome communities of soils after phytoremediation reassembled significantly. Furthermore, Indian mustard, even with relative lower root biomasses, could better reassembled the microbiome communities in rhizosphere than tall fescue which possesses a higher developed root system. In the end, analyses of functional microorganisms in rhizosphere soils provide new insights into biological and physiochemical roles of these populations in phytoremediation.

Transformation of sulfadiazine in humic acid and polystyrene microplastics solution by horseradish peroxidase coupled with 1-hydroxybenzotriazole.

Enzyme catalyzed coupling with redox mediators are considered as great interesting and viable technologies to transform antibiotics. This work demonstrated the horseradish peroxidase (HRP) was effective in transforming sulfadiazine (SDZ) transformation coupled with 1-hydroxybenzotriazole (HBT) at varying conditions. The removal of SDZ was independent of Na+ and its ionic strength, but Ca2+ could enhance transformation efficiency by increasing the enzyme activity of HRP. The presence of humic acid (HA) and polystyrene (PS) microplastics showed inhibition on the transformation of SDZ, and the transformation rate constants (k) decreased with the concentration of HA and PS particles increased. These primarily attributed to covalent coupling and electrostatic interaction between SDZ and HA, SDZ and PS, respectively, which reduced the concentration of free SDZ in the reaction solution. The presence of cation recovered the inhibition of SDZ transformation by HA and PS particles, which ascribed to compete between cation and SDZ. The divalent cations (Ca2+) showed more substantial competitiveness than mono (Na+) due to more carried charge. Eight possible transformation products were identified, and potential SDZ transformation pathways were proposed, which include δ-cleavage, γ-cleavage, carbonylation, hydroxylation, SO2 extrusion and SO3 extrusion. In addition, HA and PS particles couldn't affect the transformation pathways of SDZ. These findings provide novel understandings of the transformation and the fate of antibiotics in the natural environment by HRP coupled with redox mediators.

Transformation mechanisms of tetracycline by horseradish peroxidase with/without redox mediator ABTS for variable water chemistry.

The threat of antibiotics in the environment causing antibiotics resistance is a global health concern. Enzymes catalyze pollutant transformations, and how commercially available enzymes like horseradish peroxidase (HRP), with or without a redox mediator, may be used to degrade antibiotics in water treatment is of great interest. This work demonstrates tetracycline transformation by HRP, and how it is significantly enhanced by free radicals created from the mediator 2,2-Azino-bis-(3-ethylbenzothiazoline-6-sulfonic acid) (ABTS). Water temperature and pH strongly influence the tetracycline removal rate due to their correlation with the enzyme activity, abundance and stability of ABTS•+. Four transformation products were identified in the pure HRP system using a liquid chromatography tandem mass spectrometry hybrid quadrupole-orbitrap mass spectrometer system. Addition of 25 µmol L-1 ABTS not only accelerated the degradation of tetracycline, but also expanded the range of degradation pathways. Potential tetracycline transformation pathways are proposed based on these observations, which include a range of mechanisms such as hydroxylation, demethylation, dehydration, decarbonylation and secondary alcohol oxidation. Despite of decreased efficiency, the HRP/ABTS system was able to degrade tetracycline in a domestic wastewater treatment plant effluent matrix, which demonstrates the potential of the system to be utilized in wastewater treatment.

Tetracyclines, sulfonamides and quinolones and their corresponding resistance genes in coastal areas of Beibu Gulf, China.

As the rapid development of aquaculture in the Beibu Gulf, large number of antibiotics was released into marine aquatic environment. But little integrated studies concerned on the occurrence and correlation of antibiotics with their corresponding ARGs in this region. We investigated the abundance of three prevalent categories of antibiotics and corresponding antibiotic resistance genes (ARGs), analyzed the potential correlation among antibiotics, ARGs and sediment properties in eight terminal rivers, nine semi-closed sites and eight nearshore areas from Beibu Gulf. Residual concentrations of total antibiotics ranged from 51.04 to 137.64 µg/kg, TETs had higher concentrations than FQs and SAs. Conventional PCR of ARGs revealed intI1, sul2, tetB, tetC and tetG had 100% detection frequency in all samples. Quantitative analysis showed sul genes were dominant compared to tet genes. The abundance of antibiotics and ARGs were decreased from river to open sea. Significant correlations (p < .05) between intI1 and ARGs (sul2 and tetG) were revealed by Pearson analysis, indicating that intI1 gene played a significant role in the occurrence and diffusion of ARGs. Significant correlations among the ARGs, the corresponding or irrelevant residual antibiotics and sediment characteristics were observed by redundancy analysis and network. Due to the potential health risks of antibiotics with corresponding ARGs, the control and treatment measures should deserve wide attention.

Defense responses in earthworms (Eisenia fetida) exposed to low-density polyethylene microplastics in soils.

The potential threats of microplastics to global health are a new problem. However, little is known about the influence of microplastics on soil organisms. Here, we investigated the effects of low-density polyethylene (LDPE, < 400 µm) on earthworms (Eisenia fetida) under different concentrations (0.1, 0.25, 0.5, 1.0, 1.5 g/kg dry) with three replicates in artificial soil. Results showed that surface damage of earthworms was observed at the concentration of 1.5 g/kg LDPE after exposure 28 days. The microplastics were ingested in a dose-response manner. Smaller sizes of LDPE microplastics were found in the casts of E. fetida, and approximately 30% of the microplastics egested (size < 100 µm) were increased compared with initial microplastics in the soil. The catalase activity and malondialdehyde content increased significantly at the concentration of 1.0 g/kg LDPE after exposure 28 days, and acetylcholine esterase was significantly stimulated at concentrations of 1.5 and 1.0 g/kg LDPE on days 21 and 28, respectively. The results of this study demonstrate the potential risk of LDPE microplastics to E. fetida and may provide a reference for the impact of microplastics on terrestrial creatures.

Toxicity of soil labile aluminum fractions and aluminum species in soil water extracts on the rhizosphere bacterial community of tall fescue.

Different forms of aluminum (Al) in soil can be toxic to plants and the bacterial community. In our previous study, the distribution and toxicity to plants of soil Al species and soil labile Al fractions were examined. However, the toxicity of different forms of Al on the bacterial community has not been completely studied. In this study, five soil samples (pH: 4.92, 6.17, 6.62, 6.70, 8.51) were collected from Lichuan, China. Tall fescue was planted in rhizosphere boxes with those soils for 120 days. The toxicity of soil Al species and soil labile Al fractions on the bacterial community of near-rhizosphere (NR) soils and far-rhizosphere (FR) soils were analyzed. The effect of different forms of Al on bacterial community between NR and FR soils was small, but the difference was obvious according to the different spatial distribution of samples. An individual bacterial community has eosinophilia, and most bacterial communities are tolerant of heavy metals (e.g., Cu, Zn, Cd). The toxicity of exchangeable Al has a strong effect on the bacterial community. Meanwhile, the toxicity of Al3+ to the bacterial community is strong. In this study, the key finding was that the toxicity of the Al-F- complex toward the bacterial community and plants was different. AlF2+, AlF2+, AlF3, and AlF4- are toxic for the bacterial community, and the correlation decreases with the addition of F-. This finding is of considerable significance to the treatment of acid-contaminated soil and the study of the tolerance mechanism of plants toward Al.

Microplastic pollution in vegetable farmlands of suburb Wuhan, central China.

Microplastic pollution has become an emergency issue in the global environment. However, little is known about the occurrence and distribution of microplastics in agroecological system. In this study, we investigated the pollution of microplastics in vegetable farmlands in suburb of Wuhan, central China. Results showed that the abundance of microplastics ranged from 320 to 12,560 items/kgdw. Microplastic pollution adjacent to the suburban roads was about 1.8 times as serious as that in the residential areas. Microplastics with size less than 0.2 mm were dominated, reaching 70% in total. The main types of microplastics were fibers and microbeads. Moreover, polyamide (32.5%) and polypropylene (28.8%) were the main types of polymer. This study proclaims the occurrence and characteristics of microplastic pollution in typical farmland soils of suburb land. It may provide significant basis for subsequent research about microplastics contaminant in the terrestrial ecosystem.

Microbial Transformation of A Sulfonamide Antibiotic Under Various Background Nutrient Conditions.

Certain microbes can biotransform antibiotics. Little is known about these microbes or the biotransformation processes. The objective of this study was to determine the effects of background nutrient conditions on a sulfonamide degrading culture and on its biotransformation of sulfadiazine (SDZ) with respect to transformation kinetics and transformation products. The mixed culture capable of degrading SDZ consisted primarily of three genera, Brevibacterium, Castellaniella and Leucobacter. The maximum biotransformation rate was 4.55 mg L-1 d-1 in the absence of background nutrients. Among the three background nutrient conditions tested, diluted R2A medium lead to the highest maximum SDZ biotransformation rates, followed by humic acid and glucose. 2-aminopyrimidine was the major SDZ biotransformation product under the background nutrient conditions tested, while another previously reported biotransformation product, sulfanilic acid, was further degraded by the mixed culture. The findings from this study can help improve our estimation of the fate of antibiotics in the environment.

Antibiotics and Resistance Genes in Awash River Basin, Ethiopia.

Among contaminants of emerging concern in the environment, a growing attention has been given to antibiotics and antibiotic-resistant genes (ARGs) due to the rise in their usage and potential ecotoxicological and public health effect. However, the occurrence of these contaminants in the environment is little investigated in developing countries particularly in sub-Saharan regions. In this study, the occurrence of three groups of antimicrobials including tetracycline, sulfonamides and fluoroquinolone, and their corresponding ARGs were investigated in the sediments of Awash River Basin, Ethiopia. Out of twelve studied compounds, sulfadiazine and enrofloxacin showed the highest and lowest detection frequency, respectively. Polymerase chain reaction (PCR) analysis revealed that tetA and tetB occurred in all the samples. The relative abundance of the resistant genes was in the following order: tetA > tetB > sul2 > sul1. Redundancy analysis result indicated that some sediment characteristics were found to have influence on the distribution sul1-resistant gene.

[Degradation Mechanism of Tetracycline Using Fe/Cu Oxides as Heterogeneous Activators of Peroxymonosulfate].

A green, highly efficient, and porous copper-ferrite heterogeneous catalyst (Fe-Cu-400) with good magnetism was synthesized via a coprecipitation method. The catalysts were characterized using XRD, BET, FESEM, and EDS. The performance of Fe-Cu-400 as a catalyst was evaluated by activating peroxymonosulfate (PMS) for degradation of tetracycline (TC) in aqueous solution and investigating the influence of several water parameters. The Fe-Cu-400/PMS system showed a greater TC degradation ability, and the degradation rate of TC was enhanced with an increase in the PMS concentration and the initial pH of the coupled Fe-Cu-400/PMS system. Anions including H2PO4-, HCO3-, and Cl- promoted TC degradation, whereas NO3- showed a low inhibitory influence. In addition, Fe-Cu-400 exhibited excellent reusability towards activating PMS for TC degradation after five runs of tests. Possible mechanisms of the activation of PMS by Fe-Cu-400 and the main reactive species were proposed based on radical identification tests and XPS analysis. Furthermore, a potential degradation pathway was proposed that included hydrolysis and sequential removal of N-methyl, hydroxyl, and amine functional groups according to the results of LC-MS and TOC detections.

Background Nutrients Affect the Biotransformation of Tetracycline by Stenotrophomonas maltophilia as Revealed by Genomics and Proteomics.

Certain bacteria are resistant to antibiotics and can even transform antibiotics in the environment. It is unclear how the molecular mechanisms underlying the resistance and biotransformation processes vary under different environmental conditions. The objective of this study is to investigate the molecular mechanisms of tetracycline resistance and biotransformation by Stenotrophomonas maltophilia strain DT1 under various background nutrient conditions. Strain DT1 was exposed to tetracycline for 7 days with four background nutrient conditions: no background (NB), peptone (P), peptone plus citrate (PC), and peptone plus glucose (PG). The biotransformation rate follows the order of PC > P > PG > NB ≈ 0. Genomic analysis showed that strain DT1 contained tet(X1), a gene encoding an FAD-binding monooxygenase, and eight peroxidase genes that could be relevant to tetracycline biotransformation. Quantitative proteomic analyses revealed that nodulation protein transported tetracycline outside of cells; hypoxanthine-guanine phosphoribosyltransferase facilitated the activation of the ribosomal protection proteins to prevent the binding of tetracycline to the ribosome and superoxide dismutase and peroxiredoxin-modified tetracycline molecules. Comparing different nutrient conditions showed that the biotransformation rates of tetracycline were positively correlated with the expression levels of superoxide dismutase.

Biotransformation of tetracycline by a novel bacterial strain Stenotrophomonas maltophilia DT1.

Although several abiotic processes have been reported that can transform antibiotics, little is known about whether and how microbiological processes may degrade antibiotics in the environment. This work isolated one tetracycline degrading bacterial strain, Stenotrophomonas maltophilia strain DT1, and characterized the biotransformation of tetracycline by DT1 under various environmental conditions. The biotransformation rate was the highest when the initial pH was 9 and the reaction temperature was at 30°C, and can be described using the Michaelis-Menten model under different initial tetracycline concentrations. When additional substrate was present, the substrate that caused increased biomass resulted in a decreased biotransformation rate of tetracycline. According to disk diffusion tests, the biotransformation products of tetracycline had lower antibiotic potency than the parent compound. Six possible biotransformation products were identified, and a potential biotransformation pathway was proposed that included sequential removal of N-methyl, carbonyl, and amine function groups. Results from this study can lead to better estimation of the fate and transport of antibiotics in the environment and has the potential to be utilized in designing engineering processes to remove tetracycline from water and soil.