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1.
Adv Sci (Weinh) ; : e2402471, 2024 Jun 03.
Article in English | MEDLINE | ID: mdl-38828743

ABSTRACT

Photocatalytic solar-to-fuel conversion over metal halide perovskites (MHPs) has recently attracted much attention, while the roles of defects in MHPs are still under debate. Specifically, the mainstream viewpoint is that the defects are detrimental to photocatalytic performance, while some recent studies show that certain types of defects contribute to photoactivity enhancement. However, a systematic summary of why it is contradictory and how the defects in MHPs affect photocatalytic performance is still lacking. In this review, the innovative roles of defects in MHP photocatalysts are highlighted. First, the origins of defects in MHPs are elaborated, followed by clarifying certain benefits of defects in photocatalysts including optical absorption, charge dynamics, and surface reaction. Afterward, the recent progress on defect-related MHP photocatalysis, i.e., CO2 reduction, H2 generation, pollutant degradation, and organic synthesis is systematically discussed and critically appraised, putting emphasis on their beneficial effects. With defects offering peculiar sets of merits and demerits, the personal opinion on the ongoing challenges is concluded and outlining potentially promising opportunities for engineering defects on MHP photocatalysts. This critical review is anticipated to offer a better understanding of the MHP defects and spur some inspiration for designing efficient MHP photocatalysts.

2.
Materials (Basel) ; 17(9)2024 May 02.
Article in English | MEDLINE | ID: mdl-38730945

ABSTRACT

Environmental pollution and energy crises have garnered global attention. The substantial discharge of organic waste into water bodies has led to profound environmental contamination. Photocatalytic fuel cells (PFCs) enabling the simultaneous removal of refractory contaminants and recovery of the chemical energy contained in organic pollutants provides a potential strategy to solve environmental issues and the energy crisis. This review will discuss the fundamentals, working principle, and configuration development of PFCs and photocatalytic microbial fuel cells (PMFCs). We particularly focus on the strategies for improving the wastewater treatment performance of PFCs/PMFCs in terms of coupled advanced oxidation processes, the rational design of high-efficiency electrodes, and the strengthening of the mass transfer process. The significant potential of PFCs/PMFCs in various fields is further discussed in detail. This review is intended to provide some guidance for the better implementation and widespread adoption of PFC wastewater treatment technologies.

3.
Adv Mater ; 36(9): e2308972, 2024 Mar.
Article in English | MEDLINE | ID: mdl-37917884

ABSTRACT

Slippery liquid-infused porous surfaces (SLIPS) have received widespread attention in the antifouling field. However, the reduction in antifouling performance caused by lubricant loss limits their application in marine antifouling. Herein, inspired by the skin of a poison dart frog which contains venom glands and mucus, a porous liquid (PL) based on ZIF-8 is prepared as a lubricant and injected into a silicone polyurethane (SPU) matrix to construct a new type of SLIPS for marine antifouling applications: the slippery porous-liquid-infused porous surface (SPIPS). The SPIPS consists of a responsive antifoulant-releasing switch between "defensive" and "offensive" antifouling modes to intelligently enhance the antifouling effect after lubricant loss. The SPIPS can adjust antifouling performance to meet the antifouling requirements under different light conditions. The wastage of antifoulants is reduced, thereby effectively maintaining the durability and service life of SLIPS materials. The SPIPS exhibits efficient lubricant self-replenishment, self-cleaning, anti-protein, anti-bacterial, anti-algal, and self-healing (97.48%) properties. Furthermore, it shows satisfactory 360-day antifouling performance in actual marine fields during boom seasons, demonstrating the longest antifouling lifespan in the field tests of reported SLIPS coatings. Hence, the SPIPS can effectively promote the development of SLIPS for neritic antifouling.


Subject(s)
Biofouling , Animals , Biofouling/prevention & control , Porosity , Lubricants , Poison Frogs , Polyurethanes
4.
Nanomaterials (Basel) ; 13(18)2023 Sep 18.
Article in English | MEDLINE | ID: mdl-37764608

ABSTRACT

Ammonia (NH3) plays a significant role in the manufacture of fertilizers, nitrogen-containing chemical production, and hydrogen storage. The electrochemical nitrogen reduction reaction (e-NRR) is an attractive prospect for achieving clean and sustainable NH3 production, under mild conditions driven by renewable energy. The sluggish cleavage of N≡N bonds and poor selectivity of e-NRR are the primary challenges for e-NRR, over the competitive hydrogen evolution reaction (HER). The rational design of e-NRR electrocatalysts is of vital significance and should be based on a thorough understanding of the structure-activity relationship and mechanism. Among the various explored e-NRR catalysts, metal-based electrocatalysts have drawn increasing attention due to their remarkable performances. This review highlighted the recent progress and developments in metal-based electrocatalysts for e-NRR. Different kinds of metal-based electrocatalysts used in NH3 synthesis (including noble-metal-based catalysts, non-noble-metal-based catalysts, and metal compound catalysts) were introduced. The theoretical screening and the experimental practice of rational metal-based electrocatalyst design with different strategies were systematically summarized. Additionally, the structure-function relationship to improve the NH3 yield was evaluated. Finally, current challenges and perspectives of this burgeoning area were provided. The objective of this review is to provide a comprehensive understanding of metal-based e-NRR electrocatalysts with a focus on enhancing their efficiency in the future.

5.
Small ; 19(35): e2300441, 2023 Aug.
Article in English | MEDLINE | ID: mdl-37118851

ABSTRACT

The reaction kinetics of hydrogen evolution reaction (HER) is largely determined by balancing the Volmer step in alkaline media. Bifunctionality as a proposed strategy can divide the work of water dissociation and intermediates (OH* and H*) adsorption/desorption. However, sluggish OH* desorption plagues water re-adsorption, which leads to poisoning effects of active sites. Some active sites may even directly act as spectators and do not participate in the reaction. Furthermore, the activity comparison under approximate nanostructure between bifunctional effect and single-exposed active sites is not fully understood. Here, a facile three-step strategy is adopted to successfully grow molybdenum disulfide (MoS2 ) on cobalt-containing nitrogen-doped carbon nanotubes (Co-NCNTs), forming obvious dual active domains. The active sites on domains of Co-NCNTs and MoS2  and the tuned electronic structure at the heterointerface trigger the bifunctional effect to balance the Volmer step and improve the catalytic activity. The HER driven by the bifunctional effect can significantly optimize the Gibbs free energy of water dissociation and hydrogen adsorption, resulting in fast reaction kinetics and superior catalytic performance. As a result, the Co-NCNTs/MoS2  catalyst outperforms other HER electrocatalysts with low overpotential (58 and 84 mV at 10 mA cm-2  in alkaline and neutral conditions, respectively), exceptional stability, and negligible degradation.

6.
ACS Nano ; 16(12): 20251-20262, 2022 Dec 27.
Article in English | MEDLINE | ID: mdl-36520674

ABSTRACT

High relative permittivity and low dielectric loss are two desired parameters of a triboelectric layer to enhance its mechanical-to-electrical energy conversion efficiency in a triboelectric nanogenerator (TENG). However, the elevated permittivity of the triboelectric layer is always accompanied by increasing dielectric loss, limiting further improvement or even reducing the electrical output. Herein, we report a method for improving the relative permittivity and suppressing the dielectric loss of the triboelectric layer via nanoscale design at the particle-polymer interface. When incorporated with 2 wt % Ag@C, the triboelectric-layer-enhanced TENG (TLE-TENG) presents a 2.6-fold increment in relative permittivity and a 302% current enhancement. An instantaneous peak power density of 1.22 W m-2, an excellent pressure sensitivity of 90.95 V kPa-1, and an optimized sheet resistance (∼0.14 Ω/sq) are attributes of this greatly enhanced device. Such improvements bode well for the implementation of these enhancing strategies to help position TLE-TENGs as pervasive and sustainable power sources and active self-powered sensors in the era of the Internet of Things.

7.
Nat Commun ; 13(1): 7835, 2022 12 20.
Article in English | MEDLINE | ID: mdl-36539426

ABSTRACT

Electrostatic adsorption is an important complement to the mechanical filtration for high-efficiency air filtering. However, the electrostatic charge decays with time, especially in humid conditions. In this work, a self-charging air filter is presented to capture airborne particles in an efficient and long-lasting manner without the need of external power sources. Leveraging the triboelectric effect between the electrospun poly(vinylidene fluoride) nanofiber film and nylon fabric, the self-charging air filter-based mask excited by breathing can continuously replenish electrostatic charges. As a result, its effective lifespan is up to 60 hours (including 30 hours of wearing), with a minimum filtration efficiency of 95.8% for 0.3-µm particles. The filtration efficiency and lifespan are significantly higher than those of a commercial surgical mask. Furthermore, we uncover the quantitative relation between filtration efficiency and surface electrostatic potential. This work provides an effective strategy to significantly prolong the electrostatic adsorption efficacy for high-performance air-filtering masks.


Subject(s)
Air Filters , Masks , Static Electricity , Filtration , Textiles
8.
Environ Sci Technol ; 56(23): 16582-16601, 2022 12 06.
Article in English | MEDLINE | ID: mdl-36367480

ABSTRACT

Photocatalysis is regarded as one of the most promising technologies for indoor volatile organic compounds (VOCs) elimination due to its low cost, safe operation, energy efficiency, and high mineralization efficiency under ambient conditions. However, the practical applications of this technology are limited, despite considerable research efforts in recent decades. Until now, most of the works were carried out in the laboratory and focused on exploring new catalytic materials. Only a few works involved the immobilization of catalysts and the design of reactors for practical applications. Therefore, this review systematically summarizes the research and development on photocatalytic oxidation (PCO) of VOCs, with emphasis on recent catalyst's immobilization and reactor designs in detail. First, different types of photocatalytic materials and the mechanisms for PCO of VOCs are briefly discussed. Then, both the catalyst's immobilization techniques and reactor designs are reviewed in detail. Finally, the existing challenges and future perspectives for PCO of VOCs are proposed. This work aims to provide updated information and research inspirations for the commercialization of this technology in the future.


Subject(s)
Air Pollution, Indoor , Volatile Organic Compounds , Air Pollution, Indoor/analysis , Photochemistry/methods , Catalysis , Oxidation-Reduction
9.
J Am Chem Soc ; 144(37): 17097-17109, 2022 Sep 21.
Article in English | MEDLINE | ID: mdl-36066387

ABSTRACT

Solar carbon dioxide (CO2) conversion is an emerging solution to meet the challenges of sustainable energy systems and environmental/climate concerns. However, the construction of isolated active sites not only influences catalytic activity but also limits the understanding of the structure-catalyst relationship of CO2 reduction. Herein, we develop a universal synthetic protocol to fabricate different single-atom metal sites (e.g., Fe, Co, Ni, Zn, Cu, Mn, and Ru) anchored on the triazine-based covalent organic framework (SAS/Tr-COF) backbone with the bridging structure of metal-nitrogen-chlorine for high-performance catalytic CO2 reduction. Remarkably, the as-synthesized Fe SAS/Tr-COF as a representative catalyst achieved an impressive CO generation rate as high as 980.3 µmol g-1 h-1 and a selectivity of 96.4%, over approximately 26 times higher than that of the pristine Tr-COF under visible light irradiation. From X-ray absorption fine structure analysis and density functional theory calculations, the superior photocatalytic performance is attributed to the synergic effect of atomically dispersed metal sites and Tr-COF host, decreasing the reaction energy barriers for the formation of *COOH intermediates and promoting CO2 adsorption and activation as well as CO desorption. This work not only affords rational design of state-of-the-art catalysts at the molecular level but also provides in-depth insights for efficient CO2 conversion.

10.
ACS Appl Mater Interfaces ; 14(3): 4399-4408, 2022 Jan 26.
Article in English | MEDLINE | ID: mdl-35014796

ABSTRACT

The rapid development of electrochemical power systems has prompted high demand for nonprecious trifunctional electrocatalysts with superior performance, prolonged stability, and low cost for oxygen reduction reaction (ORR), oxygen evolution reaction (OER), and hydrogen evolution reaction (HER). Here, a valence engineering strategy is devised to construct a morphology with polyvalent cobalt encapsulated in nitrogen-doped carbon nanofibers (Co/N-CNFs). The diverse cobalt valence states of the Co/N-CNF catalysts contribute to their excellent catalytic effect and high durability in multiple electrochemical processes. The optimal Co/N-CNF catalyst fabricated exhibits a high half-wave potential of ORR (0.86 V) and low overpotentials of OER (380 mV) and HER (241 mV) at 10 mA cm-2. The Co/N-CNF-based Zn-air battery possesses a high charge-discharge efficiency as well as a good cycle stability (50 h at 10 mA cm-2 and 120 h at 20 mA cm-2), much superior to the Pt/C-based batteries. Furthermore, the Co/N-CNF catalyst could perform efficient overall water splitting.

11.
ACS Nano ; 15(6): 9670-9678, 2021 06 22.
Article in English | MEDLINE | ID: mdl-34024096

ABSTRACT

The rational design of photocatalysts for efficient nitrogen (N2) fixation at ambient conditions is important for revolutionizing ammonia production and quite challenging because the great difficulty lies in the adsorption and activation of the inert N2. Inspired by a biological molecule, chlorophyll, featuring a porphyrin structure as the photosensitizer and enzyme nitrogenase featuring an iron (Fe) atom as a favorable binding site for N2via π-backbonding, here we developed a porphyrin-based metal-organic framework (PMOF) with Fe as the active center as an artificial photocatalyst for N2 reduction reaction (NRR) under ambient conditions. The PMOF features aluminum (Al) as metal node imparting high stability and Fe incorporated and atomically dispersed by residing at each porphyrin ring promoting the adsorption and the activation of N2, termed Al-PMOF(Fe). Compared with the pristine Al-PMOF, Al-PMOF(Fe) exhibits a substantial enhancement in NH3 yield (635 µg g-1cat.) and production rate (127 µg h-1 g-1cat.) of 82% and 50%, respectively, on par with the best-performing MOF-based NRR catalysts. Three cycles of photocatalytic NRR experimental results corroborate a stable photocatalytic activity of Al-PMOF(Fe). The combined experimental and theoretical results reveal that the Fe-N site in Al-PMOF(Fe) is the active photocatalytic center that can mitigate the difficulty of the rate-determining step in photocatalytic NRR. The possible reaction pathways of NRR on Al-PMOF(Fe) were established. Our study of porphyrin-based MOF for the photocatalytic NRR will provide insight into the rational design of catalysts for artificial photosynthesis.


Subject(s)
Metal-Organic Frameworks , Porphyrins , Iron , Nitrogen Fixation , Oxidation-Reduction
12.
ACS Appl Mater Interfaces ; 13(9): 11470-11479, 2021 Mar 10.
Article in English | MEDLINE | ID: mdl-33630565

ABSTRACT

Benefitting from the coalescence-induced droplet jumping on superhydrophobic surfaces, the condensing droplets on heat exchangers can be removed efficiently, significantly improving the condensation heat-transfer performance of various thermal applications. However, the enhancement of droplet jumping height and self-removal to further improve the condensation heat-transfer performance of the thermal applications remains a challenge due to considerable interfacial adhesion caused by the inevitable partial-Wenzel state condensing droplets on superhydrophobic surfaces. In this study, a biphilic nanostructure is developed to effectively improve the droplet jumping height by decreasing the interfacial adhesion with the formation of Cassie-like droplets. Under atmospheric conditions, ∼28% improvement of droplet jumping height is achieved on a biphilic surface compared to that of a superhydrophobic surface. Additionally, the droplet contact electrification on biphilic surfaces discovered in this work allows the droplets to jump ∼137% higher compared with that under atmospheric conditions. Furthermore, the droplet jumping and electrification mechanisms on the biphilic surface are revealed by building a theoretical model that can predict the experimental results well. Apart from being a milestone for the droplet jumping physics development on biphilic nanostructures, this work also provides new insights into the micro-droplet discipline.

13.
Angew Chem Int Ed Engl ; 60(8): 4192-4198, 2021 Feb 19.
Article in English | MEDLINE | ID: mdl-33197100

ABSTRACT

Regulating the local environment and structure of metal center coordinated by nitrogen ligands (M-N4 ) to accelerate overall reaction dynamics of the electrochemical CO2 reduction reaction (CO2 RR) has attracted extensive attention. Herein, we develop an axial traction strategy to optimize the electronic structure of the M-N4 moiety and construct atomically dispersed nickel sites coordinated with four nitrogen atoms and one axial oxygen atom, which are embedded within the carbon matrix (Ni-N4 -O/C). The Ni-N4 -O/C electrocatalyst exhibited excellent CO2 RR performance with a maximum CO Faradic efficiency (FE) close to 100 % at -0.9 V. The CO FE could be maintained above 90 % in a wide range of potential window from -0.5 to -1.1 V. The superior CO2 RR activity is due to the Ni-N4 -O active moiety composed of a Ni-N4 site with an additional oxygen atom that induces an axial traction effect.

14.
Small ; 16(28): e2002212, 2020 Jul.
Article in English | MEDLINE | ID: mdl-32510832

ABSTRACT

Developing efficient earth-abundant MoS2 based hydrogen evolution reaction (HER) electrocatalysts is important but challenging due to the sluggish kinetics in alkaline media. Herein, a strategy to fabricate a high-performance MoS2 based HER electrocatalyst by modulating interface electronic structure via metal oxides is developed. All the heterostructure catalysts present significant improvement of HER electrocatalytic activities, demonstrating a positive role of metal oxides decoration in promoting the rate-limited water dissociation step for the HER mechanism in alkaline media. The as-obtained MoS2 /Ni2 O3 H catalyst exhibits a low overpotential of 84 mV at 10 mA cm-2 and small charge-transfer resistance of 1.5 Ω in 1 m KOH solution. The current density (217 mA cm-2 ) at the overpotential of 200 mV is about 2 and 24 times higher than that of commercial Pt/C and bare MoS2 , respectively. Additionally, these MoS2 /metal oxides heterostructure catalysts show outstanding long-term stability under a harsh chronopotentiometry test. Theoretical calculations reveal the varied sensitivity of 3d-band in different transition oxides, in which Ni-3d of Ni2 O3 H is evidently activated to achieve fast electron transfer for HER as the electron-depletion center. Both electronic properties and energetic reaction trends confirm the high electroactivity of MoS2 /Ni2 O3 H in the adsorption and dissociation of H2 O for highly efficient HER in alkaline media.

15.
Phys Chem Chem Phys ; 22(7): 4080-4085, 2020 Feb 21.
Article in English | MEDLINE | ID: mdl-32031181

ABSTRACT

Many organic molecules have unique magnetic properties and can potentially serve as excellent molecular spin devices, which is worth exploring deeply. Here, the spin transport properties of Mn, Fe, Co and Cu porphyrin dimer devices are investigated based on the first principles method. The spin filtering efficiencies of these molecular devices are maintained at 100% within certain applied voltage ranges and magnetoresistance ratios are higher than 108% which increase as the voltage increases. To explain the excellent spin-filtering and giant magnetoresistance effects, analysis of spin electron densities and transmission spectra indicates that magnetic properties are mainly contributed by the metal atoms and their neighbouring N atoms. From the transmission pathway studies, spin electrons come mainly through the π-conjugated structure of the metal porphyrin ring. Interestingly, in the Cu porphyrin dimer device, magnetic moments of the Cu-N structure in the Cu porphyrin dimer device show spin behaviors different from those of Mn, Fe and Co porphyrin dimer devices.

16.
J Am Chem Soc ; 142(5): 2404-2412, 2020 Feb 05.
Article in English | MEDLINE | ID: mdl-31902210

ABSTRACT

Atomically dispersed transition metal active sites have emerged as one of the most important fields of study because they display promising performance in catalysis and have the potential to serve as ideal models for fundamental understanding. However, both the preparation and determination of such active sites remain a challenge. The structural engineering of carbon- and nitrogen-coordinated metal sites (M-N-C, M = Fe, Co, Ni, Mn, Cu, etc.) via employing new heteroatoms, e.g., P and S, remains challenging. In this study, carbon nanosheets embedded with nitrogen and phosphorus dual-coordinated iron active sites (denoted as Fe-N/P-C) were developed and determined using cutting edge techniques. Both experimental and theoretical results suggested that the N and P dual-coordinated iron sites were favorable for oxygen intermediate adsorption/desorption, resulting in accelerated reaction kinetics and promising catalytic oxygen reduction activity. This work not only provides efficient way to prepare well-defined single-atom active sites to boost catalytic performance but also paves the way to identify the dual-coordinated single metal atom sites.

17.
PLoS One ; 14(8): e0207137, 2019.
Article in English | MEDLINE | ID: mdl-31450234

ABSTRACT

BACKGROUND CONTEXT: Computer-assisted navigation (CAN) may guide spinal instrumentation, and requires alignment of patient anatomy to imaging. Iterative closest-point (ICP) algorithms register anatomical and imaging surface datasets, which may fail in the presence of geometric symmetry (congruence), leading to failed registration or inaccurate navigation. Here we computationally quantify geometric congruence in posterior spinal exposures, and identify predictors of potential navigation inaccuracy. METHODS: Midline posterior exposures were performed from C1-S1 in four human cadavers. An optically-based CAN generated surface maps of the posterior elements at each level. Maps were reconstructed to include bilateral hemilamina, or unilateral hemilamina with/without the base of the spinous process. Maps were fitted to symmetrical geometries (cylindrical/spherical/planar) using computational modelling, and the degree of model fit quantified based on the ratio of model inliers to total points. Geometric congruence was subsequently assessed clinically in 11 patients undergoing midline exposures in the cervical/thoracic/lumbar spine for posterior instrumented fusion. RESULTS: In cadaveric testing, increased cylindrical/spherical/planar symmetry was seen in the high-cervical and subaxial cervical spine relative to the thoracolumbar spine (p<0.001). Extension of unilateral exposures to include the ipsilateral base of the spinous process decreased symmetry independent of spinal level (p<0.001). In clinical testing, increased cylindrical/spherical/planar symmetry was seen in the subaxial cervical relative to the thoracolumbar spine (p<0.001), and in the thoracic relative to the lumbar spine (p<0.001). Symmetry in unilateral exposures was decreased by 20% with inclusion of the ipsilateral base of the spinous process. CONCLUSIONS: Geometric congruence is most evident at C1 and the subaxial cervical spine, warranting greater vigilance in navigation accuracy verification. At all levels, inclusion of the base of the spinous process in unilateral registration decreases the likelihood of geometric symmetry and navigation error. This work is important to allow the extension of line-of-sight based registration techniques to minimally-invasive unilateral approaches.


Subject(s)
Computer Simulation , Spine/anatomy & histology , Spine/surgery , Surgery, Computer-Assisted , Adult , Aged , Aged, 80 and over , Cadaver , Humans , Intraoperative Period , Middle Aged , Spinal Fusion , Spine/diagnostic imaging , Tomography, Spiral Computed
18.
Sci Rep ; 8(1): 14894, 2018 10 05.
Article in English | MEDLINE | ID: mdl-30291261

ABSTRACT

Intraoperative image-guided surgical navigation for craniospinal procedures has significantly improved accuracy by providing an avenue for the surgeon to visualize underlying internal structures corresponding to the exposed surface anatomy. Despite the obvious benefits of surgical navigation, surgeon adoption remains relatively low due to long setup and registration times, steep learning curves, and workflow disruptions. We introduce an experimental navigation system utilizing optical topographical imaging (OTI) to acquire the 3D surface anatomy of the surgical cavity, enabling visualization of internal structures relative to exposed surface anatomy from registered preoperative images. Our OTI approach includes near instantaneous and accurate optical measurement of >250,000 surface points, computed at >52,000 points-per-second for considerably faster patient registration than commercially available benchmark systems without compromising spatial accuracy. Our experience of 171 human craniospinal surgical procedures, demonstrated significant workflow improvement (41 s vs. 258 s and 794 s, p < 0.05) relative to benchmark navigation systems without compromising surgical accuracy. Our advancements provide the cornerstone for widespread adoption of image guidance technologies for faster and safer surgeries without intraoperative CT or MRI scans. This work represents a major workflow improvement for navigated craniospinal procedures with possible extension to other image-guided applications.


Subject(s)
Brain , Image Interpretation, Computer-Assisted/methods , Imaging, Three-Dimensional , Magnetic Resonance Imaging/methods , Spinal Cord , Surgery, Computer-Assisted , Animals , Brain/diagnostic imaging , Brain/surgery , Humans , Imaging, Three-Dimensional/instrumentation , Imaging, Three-Dimensional/methods , Learning Curve , Neurosurgeons/education , Spinal Cord/diagnostic imaging , Spinal Cord/surgery , Surgery, Computer-Assisted/instrumentation , Surgery, Computer-Assisted/methods , Swine
19.
Bioinformatics ; 34(17): 2889-2898, 2018 09 01.
Article in English | MEDLINE | ID: mdl-29648582

ABSTRACT

Motivation: Processing of transcripts at the 3'-end involves cleavage at a polyadenylation site followed by the addition of a poly(A)-tail. By selecting which site is cleaved, the process of alternative polyadenylation enables genes to produce transcript isoforms with different 3'-ends. To facilitate the identification and treatment of disease-causing mutations that affect polyadenylation and to understand the sequence determinants underlying this regulatory process, a computational model that can accurately predict polyadenylation patterns from genomic features is desirable. Results: Previous works have focused on identifying candidate polyadenylation sites and classifying tissue-specific sites. By training on how multiple sites in genes are competitively selected for polyadenylation from 3'-end sequencing data, we developed a deep learning model that can predict the tissue-specific strength of a polyadenylation site in the 3' untranslated region of the human genome given only its genomic sequence. We demonstrate the model's broad utility on multiple tasks, without any application-specific training. The model can be used to predict which polyadenylation site is more likely to be selected in genes with multiple sites. It can be used to scan the 3' untranslated region to find candidate polyadenylation sites. It can be used to classify the pathogenicity of variants near annotated polyadenylation sites in ClinVar. It can also be used to anticipate the effect of antisense oligonucleotide experiments to redirect polyadenylation. We provide analysis on how different features affect the model's predictive performance and a method to identify sensitive regions of the genome at the single-based resolution that can affect polyadenylation regulation. Supplementary information: Supplementary data are available at Bioinformatics online.


Subject(s)
Polyadenylation , 3' Untranslated Regions , Gene Expression Regulation , Genome, Human , Genomics , Humans , Poly A
20.
Bioresour Technol ; 217: 113-20, 2016 Oct.
Article in English | MEDLINE | ID: mdl-26970695

ABSTRACT

This study explores the use of materials such as chitosan (chit), polyaniline (PANI) and titanium carbide (TC) as anode materials for microbial fuel cells. Nickel foam (NF) was used as the base anode substrate. Four different types of anodes (NF, NF/PANI, NF/PANI/TC, NF/PANI/TC/Chit) are thus prepared and used in batch type microbial fuel cells operated with a mixed consortium of Acetobacter aceti and Gluconobacter roseus as the biocatalysts and bad wine as a feedstock. A maximum power density of 18.8Wm(-3) (≈2.3 times higher than NF) was obtained in the case of the anode modified with a composite of PANI/TC/Chit. The MFCs running under a constant external resistance of (50Ω) yielded 14.7% coulombic efficiency with a maximum chemical oxygen demand (COD) removal of 87-93%. The overall results suggest that the catalytic materials embedded in the chitosan matrix show the best performance and have potentials for further development.


Subject(s)
Acetobacter/metabolism , Biocatalysis/drug effects , Bioelectric Energy Sources/microbiology , Carbon/pharmacology , Gluconobacter/metabolism , Nickel/pharmacology , Acetobacter/drug effects , Aniline Compounds/pharmacology , Biocompatible Materials/pharmacology , Chitosan/pharmacology , Electric Impedance , Electrodes , Gluconobacter/drug effects , Titanium/pharmacology
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