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1.
J Magn Reson ; 348: 107401, 2023 Mar.
Article in English | MEDLINE | ID: mdl-36774713

ABSTRACT

Temporal diffusion spectroscopy (TDS) currently uses the oscillating gradient spin echo (OGSE) experiment to measure the spectral density of translational velocity autocorrelation at single frequencies. Due to timing restrictions imposed by the transverse relaxation, the frequency selectivity and the sampling density of OGSE are limited, especially at low frequencies. We propose to overcome this problem by adopting the principles of Fourier transform spectroscopy. The new method of Fourier transform TDS (FTDS) uses two broadband gradient waveforms with different relative delays to make the spin echo attenuation sensitive to a broad range of diffusion frequencies with different harmonic modulations and calculates the spectrum by discrete Fourier transform. The method was validated by a measurement of diffusion spectra in highly restrictive tissues of a celery stalk and provided results consistent with OGSE, however, on a denser frequency grid.

2.
NMR Biomed ; 36(5): e4886, 2023 05.
Article in English | MEDLINE | ID: mdl-36517244

ABSTRACT

Recently, Ye and colleagues proposed a method for "augmented T1-weighted imaging" (aT1 W). The key operation is a complex division of gradient-echo (GRE) images obtained with different flip angles. Ye and colleagues provide an equation for the standard deviation of the obtained aT1 W signal. Here, we show that this equation leads to wrong values of the standard deviation of such an aT1 W signal. This is demonstrated by Monte Carlo simulations. The derivation of the equation provided by Ye and colleagues is shown to be erroneous. The error consists of a wrong handling of random variables and their standard deviations and of the wrong assumption of correlated noise in independently acquired GRE images. Instead, the probability distribution obtained with the aT1 W-method should have been carefully analyzed, perhaps on the basis of previous literature on ratio distributions and their normal approximations.


Subject(s)
Magnetic Resonance Imaging , Magnetic Resonance Imaging/methods
3.
Brain Struct Funct ; 227(1): 23-47, 2022 Jan.
Article in English | MEDLINE | ID: mdl-34482443

ABSTRACT

Uncertainties concerning anatomy and function of cortico-subcortical projections have arisen during the recent years. A clear distinction between cortico-subthalamic (hyperdirect) and cortico-tegmental projections (superolateral medial forebrain bundle, slMFB) so far is elusive. Deep Brain Stimulation (DBS) of the slMFB (for major depression, MD and obsessive compulsive disorders, OCD) has on the one hand been interpreted as actually involving limbic (prefrontal) hyperdirect pathways. On the other hand slMFB's stimulation region in the mesencephalic ventral tegmentum is said to impact on other structures too, going beyond the antidepressant (or anti OCD) efficacy of sole modulation of the cortico-tegmental reward-associated pathways. We have here used a normative diffusion MRT template (HCP, n = 80) for long-range tractography and augmented this dataset with ex-vivo high resolution data (n = 1) in a stochastic brain space. We compared this data with histological information and used the high resolution ex-vivo data set to scrutinize the mesencephalic tegmentum for small fiber pathways present. Our work resolves an existing ambiguity between slMFB and prefrontal hyperdirect pathways which-for the first time-are described as co-existent. DBS of the slMFB does not appear to modulate prefrontal hyperdirect cortico-subthalamic but rather cortico-tegmental projections. Smaller fiber structures in the target region-as far as they can be discerned-appear not to be involved in slMFB DBS. Our work enfeebles previous anatomical criticism and strengthens the position of the slMFB DBS target for its use in MD and OCD.


Subject(s)
Prefrontal Cortex , Subthalamic Nucleus , Deep Brain Stimulation , Medial Forebrain Bundle , Tegmentum Mesencephali
4.
Plants (Basel) ; 10(11)2021 Oct 27.
Article in English | MEDLINE | ID: mdl-34834679

ABSTRACT

The Opuntioideae include iconic cacti whose lateral branch-branch junctions are intriguing objects from a mechanical viewpoint. We have compared Opuntia ficus-indica, which has stable branch connections, with Cylindropuntia bigelovii, whose side branches abscise under slight mechanical stress. To determine the underlying structures and mechanical characteristics of these stable versus shedding cacti junctions, we conducted magnetic resonance imaging, morphometric and anatomical analyses of the branches and tensile tests of individual tissues. The comparison revealed differences in geometry, shape and material properties as follows: (i) a more pronounced tapering of the cross-sectional area towards the junctions supports the abscission of young branches of C. bigelovii. (ii) Older branches of O. ficus-indica form, initially around the branch-branch junctions, collar-shaped periderm tissue. This secondary coverage mechanically stiffens the dermal tissue, giving a threefold increase in strength and a tenfold increase in the elastic modulus compared with the epidermis. (iii) An approximately 200-fold higher elastic modulus of the vascular bundles of O. ficus-indica is a prerequisite for the stable junction of its young branches. Our results provide, for both biological and engineered materials systems, important insights into the geometric characteristics and mechanical properties of branching joints that are either stable or easily detachable.

5.
PLoS One ; 16(5): e0250903, 2021.
Article in English | MEDLINE | ID: mdl-33970948

ABSTRACT

We present the development of a dual-mode imaging platform that combines optical microscopy with magnetic resonance microscopy. Our microscope is designed to operate inside a 9.4T small animal scanner with the option to use a 72mm bore animal RF coil or different integrated linear micro coils. With a design that minimizes the magnetic distortions near the sample, we achieved a field inhomogeneity of 19 ppb RMS. We further integrated a waveguide in the optical layout for the electromagnetic shielding of the camera, which minimizes the noise increase in the MR and optical images below practical relevance. The optical layout uses an adaptive lens for focusing, 2 × 2 modular combinations of objectives with 0.6mm to 2.3mm field of view and 4 configurable RGBW illumination channels and achieves a plano-apochromatic optical aberration correction with 0.6µm to 2.3µm resolution. We present the design, implementation and characterization of the prototype including the general optical and MR-compatible design strategies, a knife-edge optical characterization and different concurrent imaging demonstrations.


Subject(s)
Equipment Design/instrumentation , Magnetic Resonance Imaging/methods , Microscopy/methods , Optical Imaging/methods , Animals , Magnetic Resonance Imaging/instrumentation , Microscopy/instrumentation , Optical Imaging/instrumentation , Phantoms, Imaging , Radio Waves
7.
NMR Biomed ; 33(11): e4394, 2020 11.
Article in English | MEDLINE | ID: mdl-32815236

ABSTRACT

Preclinical 4D flow MRI remains challenging and is restricted for parallel imaging acceleration due to the limited number of available receive channels. A radial acquisition with combined parallel imaging and temporal compressed sensing reconstruction was implemented to achieve accelerated preclinical 4D flow MRI. In order to increase the accuracy of the measured velocities, a quantitative evaluation of different temporal regularization weights for the compressed sensing reconstruction based on velocity instead of magnitude data is performed. A 3D radial retrospectively triggered phase contrast sequence with a combined parallel imaging and compressed sensing reconstruction with temporal regularization was developed. It was validated in a phantom and in vivo (C57BL/6 J mice), against an established fully sampled Cartesian sequence. Different undersampling factors (USFs [12, 15, 20, 30, 60]) were evaluated, and the effect of undersampling was analyzed in detail for magnitude and velocity data. Temporal regularization weights λ were evaluated for different USFs. Acceleration factors of up to 20 compared with full Nyquist sampling were achieved. The peak flow differences compared with the Cartesian measurement were the following: USF 12, 3.38%; USF 15, 4.68%; USF 20, 0.95%. The combination of 3D radial center-out trajectories and compressed sensing reconstruction is robust against motion and flow artifacts and can significantly reduce measurement time to 30 min at a resolution of 180 µm3 . Concisely, radial acquisition with combined compressed sensing and parallel imaging proved to be an excellent method for analyzing complex flow patterns in mice.


Subject(s)
Aorta/diagnostic imaging , Hemorheology , Magnetic Resonance Imaging , Acceleration , Animals , Disease Models, Animal , Image Processing, Computer-Assisted , Mice, Inbred C57BL , Mice, Knockout , Phantoms, Imaging , Pulse , Reproducibility of Results
8.
Int J Mol Sci ; 21(16)2020 Aug 11.
Article in English | MEDLINE | ID: mdl-32796721

ABSTRACT

Within the Aizoaceae, the genus Delosperma exhibits a vast diversification colonizing various ecological niches in South-Africa and showing evolutionary adaptations to dry habitats that might include rapid self-sealing. Leaves of Delosperma react to external damage by the bending or contraction of the entire leaf until wound edges are brought into contact. A study of leaf morphology and anatomy, biomechanics of entire leaves and individual tissues and self-sealing kinematics after a ring incision under low and high relative humidity (RH) was carried out comparing the closely related species Delosperma cooperi and Delosperma ecklonis, which are indigenous to semi-arid highlands and regions with an oceanic climate, respectively. For both species, the absolute contractions of the examined leaf segments ("apex", "incision", "base") were more pronounced at low RH levels. Independent of the given RH level, the absolute contractions within the incision region of D. cooperi were significantly higher than in all other segments of this species and of D. ecklonis. The more pronounced contraction of D. cooperi leaves was linked mainly to the elastic properties of the central vascular strand, which is approximately twice as flexible as that of D. ecklonis leaves.


Subject(s)
Aizoaceae/physiology , Plant Leaves/physiology , Aizoaceae/anatomy & histology , Aizoaceae/ultrastructure , Biomechanical Phenomena , Elastic Modulus , Magnetic Resonance Imaging , Plant Epidermis/anatomy & histology , Plant Epidermis/ultrastructure , Plant Leaves/anatomy & histology , Plant Leaves/ultrastructure , Species Specificity , Tensile Strength
9.
Front Neurosci ; 14: 543, 2020.
Article in English | MEDLINE | ID: mdl-32581687

ABSTRACT

Mesial temporal lobe epilepsy (MTLE) is the most common type of focal epilepsy. It is frequently associated with abnormal MRI findings, which are caused by underlying cellular, structural, and chemical changes at the micro-scale. In the current study, it is investigated to which extent these alterations correspond to imaging features detected by high resolution magnetic resonance imaging in the intrahippocampal kainate mouse model of MTLE. Fixed hippocampal and whole-brain sections of mouse brain tissue from nine animals under physiological and chronically epileptic conditions were examined using structural and diffusion-weighted MRI. Microstructural details were investigated based on a direct comparison with immunohistochemical analyses of the same specimen. Within the hippocampal formation, diffusion streamlines could be visualized corresponding to dendrites of CA1 pyramidal cells and granule cells, as well as mossy fibers and Schaffer collaterals. Statistically significant changes in diffusivities, fractional anisotropy, and diffusion orientations could be detected in tissue samples from chronically epileptic animals compared to healthy controls, corresponding to microstructural alterations (degeneration of pyramidal cells, dispersion of the granule cell layer, and sprouting of mossy fibers). The diffusion parameters were significantly correlated with histologically determined cell densities. These findings demonstrate that high-resolution diffusion-weighted MRI can resolve subtle microstructural changes in epileptic hippocampal tissue corresponding to histopathological features in MTLE.

10.
NMR Biomed ; 33(6): e4291, 2020 06.
Article in English | MEDLINE | ID: mdl-32154970

ABSTRACT

The aim of this study was to acquire the transient MRI signal of hyperpolarized tracers and their metabolites efficiently, for which specialized imaging sequences are required. In this work, a multi-echo balanced steady-state free precession (me-bSSFP) sequence with Iterative Decomposition with Echo Asymmetry and Least squares estimation (IDEAL) reconstruction was implemented on a clinical 3 T positron-emission tomography/MRI system for fast 2D and 3D metabolic imaging. Simulations were conducted to obtain signal-efficient sequence protocols for the metabolic imaging of hyperpolarized biomolecules. The sequence was applied in vitro and in vivo for probing the enzymatic exchange of hyperpolarized [1-13 C]pyruvate and [1-13 C]lactate. Chemical shift resolution was achieved using a least-square, iterative chemical species separation algorithm in the reconstruction. In vitro, metabolic conversion rate measurements from me-bSSFP were compared with NMR spectroscopy and free induction decay-chemical shift imaging (FID-CSI). In vivo, a rat MAT-B-III tumor model was imaged with me-bSSFP and FID-CSI. 2D metabolite maps of [1-13 C]pyruvate and [1-13 C]lactate acquired with me-bSSFP showed the same spatial distributions as FID-CSI. The pyruvate-lactate conversion kinetics measured with me-bSSFP and NMR corresponded well. Dynamic 2D metabolite mapping with me-bSSFP enabled the acquisition of up to 420 time frames (scan time: 180-350 ms/frame) before the hyperpolarized [1-13 C]pyruvate was relaxed below noise level. 3D metabolite mapping with a large field of view (180 × 180 × 48 mm3 ) and high spatial resolution (5.6 × 5.6 × 2 mm3 ) was conducted with me-bSSFP in a scan time of 8.2 seconds. It was concluded that Me-bSSFP improves the spatial and temporal resolution for metabolic imaging of hyperpolarized [1-13 C]pyruvate and [1-13 C]lactate compared with either of the FID-CSI or EPSI methods reported at 3 T, providing new possibilities for clinical and preclinical applications.


Subject(s)
Lactic Acid/metabolism , Magnetic Resonance Spectroscopy , Pyruvic Acid/metabolism , Animals , Carbon-13 Magnetic Resonance Spectroscopy , Computer Simulation , Proton Magnetic Resonance Spectroscopy , Rats, Inbred F344 , Signal Processing, Computer-Assisted , Time Factors
11.
J R Soc Interface ; 16(157): 20190327, 2019 08 30.
Article in English | MEDLINE | ID: mdl-31387485

ABSTRACT

The fruits of Chinese witch-hazel (Hamamelis mollis, Hamamelidaceae) act as 'drying squeeze catapults', shooting their seeds several metres away. During desiccation, the exocarp shrinks and splits open, and subsequent endocarp deformation is a complex three-dimensional shape change, including formation of dehiscence lines, opening of the apical part and formation of a constriction at the middle part. Owing to the constriction forming, mechanical pressure is increasingly applied on the seed until ejection. We describe a structural latch system consisting of connective cellular structures between endocarp and seed, which break with a distinct cracking sound upon ejection. A maximum seed velocity of 12.3 m s-1, maximum launch acceleration of 19 853 m s-2 (approx. 2000g) and maximum seed rotational velocity of 25 714 min-1 were measured. We argue that miniscule morphological differences between the inner endocarp surface and seed, which features a notable ridge, are responsible for putting spin on the seed. This hypothesis is further corroborated by the observation that there is no preferential seed rotation direction among fruits. Our findings show that H. mollis has evolved similar mechanisms for stabilizing a 'shot out' seed as humans use for stabilizing rifle bullets and are discussed in an ecological (dispersal biology), biomechanical (seed ballistics) and functional-morphological (fine-tuning and morphospace of functional endocarps) contexts, and promising additional aspects for future studies are proposed.


Subject(s)
Hamamelis/physiology , Seed Dispersal/physiology , Seeds/physiology , Biomechanical Phenomena , Fruit/physiology , Motion
12.
J Exp Bot ; 70(14): 3659-3678, 2019 07 23.
Article in English | MEDLINE | ID: mdl-31188449

ABSTRACT

Three- and four-dimensional imaging techniques are a prerequisite for spatially resolving the form-structure-function relationships in plants. However, choosing the right imaging method is a difficult and time-consuming process as the imaging principles, advantages and limitations, as well as the appropriate fields of application first need to be compared. The present study aims to provide an overview of three imaging methods that allow for imaging opaque, large and thick (>5 mm, up to several centimeters), hierarchically organized plant samples that can have complex geometries. We compare light microscopy of serial thin sections followed by 3D reconstruction (LMTS3D) as an optical imaging technique, micro-computed tomography (µ-CT) based on ionizing radiation, and magnetic resonance imaging (MRI) which uses the natural magnetic properties of a sample for image acquisition. We discuss the most important imaging principles, advantages, and limitations, and suggest fields of application for each imaging technique (LMTS, µ-CT, and MRI) with regard to static (at a given time; 3D) and dynamic (at different time points; quasi 4D) structural and functional plant imaging.


Subject(s)
Plants/chemistry , Biomechanical Phenomena , Imaging, Three-Dimensional , Magnetic Resonance Imaging , X-Ray Microtomography
13.
Integr Comp Biol ; 59(6): 1713-1726, 2019 12 01.
Article in English | MEDLINE | ID: mdl-31120532

ABSTRACT

In many biomimetic approaches, a deep understanding of the form-structure-function relationships in living and functionally intact organisms, which act as biological role models, is essential. This knowledge is a prerequisite for the identification of parameters that are relevant for the desired technical transfer of working principles. Hence, non-invasive and non-destructive techniques for static (3D) and dynamic (4D) high-resolution plant imaging and analysis on multiple hierarchical levels become increasingly important. In this study we demonstrate that magnetic resonance imaging (MRI) can be used to resolve the plants inner tissue structuring and functioning on the example of four plant concept generators with sizes larger than 5 mm used in current biomimetic research projects: Dragon tree (Dracaena reflexa var. angustifolia), Venus flytrap (Dionaea muscipula), Sugar pine (Pinus lambertiana) and Chinese witch hazel (Hamamelis mollis). Two different MRI sequences were applied for high-resolution 3D imaging of the differing material composition (amount, distribution, and density of various tissues) and condition (hydrated, desiccated, and mechanically stressed) of the four model organisms. Main aim is to better understand their biomechanics, development, and kinematics. The results are used as inspiration for developing novel design and fabrication concepts for bio-inspired technical fiber-reinforced branchings and smart biomimetic actuators.


Subject(s)
Biomimetics/methods , Droseraceae , Imaging, Three-Dimensional/methods , Magnetic Resonance Imaging/methods , Trees , Droseraceae/anatomy & histology , Droseraceae/physiology , Trees/anatomy & histology , Trees/physiology
14.
MAGMA ; 32(4): 437-447, 2019 Aug.
Article in English | MEDLINE | ID: mdl-30649708

ABSTRACT

OBJECTIVE: The applicability of the balanced steady-state free precession (bSSFP) sequence to the field of MR microscopy was investigated, since the potentially high SNR makes bSSFP attractive. However, particularly at ultra-high magnetic fields, a number of constraints emerge: the frequency sensitivity of the bSSFP signal, the duty cycle of the imaging gradients, and the intrinsic diffusion attenuation of the steady state due to the imaging gradients. MATERIALS AND METHODS: Optimization of the bSSFP sequence was performed on three imaging systems (7 T and 9.4 T) suited for MR microscopy. Since biological samples are often imaged in the very proximity of materials from sample containers/holder or devices such as electrodes, several microscopy phantoms representing such circumstances were fabricated and examined with 3D bSSFP. RESULTS: Artifact-free microscopic bSSFP images could be obtained with voxel sizes down to 16 µm × 16 µm × 78 µm and with an SNR gain of 25% over standard gradient echo images. CONCLUSION: With appropriate choice of phantom materials, optimization of the flip angle to the diffusion-attenuated steady state and protocols considering duty-cycle limitations, bSSFP can be a valuable tool in MR microscopy.


Subject(s)
Image Interpretation, Computer-Assisted/methods , Magnetic Resonance Imaging/methods , Microscopy/methods , Algorithms , Artifacts , Computer Simulation , Image Enhancement , Image Processing, Computer-Assisted/methods , Magnetic Fields , Phantoms, Imaging , Reproducibility of Results , Signal-To-Noise Ratio , Water
15.
Sci Rep ; 8(1): 9881, 2018 06 29.
Article in English | MEDLINE | ID: mdl-29959343

ABSTRACT

The development of the branch-stem-attachment of Dracaena marginata was analyzed to clarify how a load-adapted arrangement of mechanically relevant tissues, i.e. the vascular bundles with fiber caps, is established during ontogeny. For this purpose, 3D images of four intact and developing buds of D. marginata were repetitively acquired in vivo within the time span of 180 days using high-resolution magnetic resonance imaging, as this method allows for non-invasive and non-destructive image acquisition. This methodical approach enabled the classification of distinct ontogenetic stages revealing the complex ontogeny of the branch-stem-attachment in D. marginata and the establishment of a load-adapted tissue arrangement within the junction between branch and main stem. This further allows for a first biomimetic abstraction and the transfer into a technical implementation of the form-structure-function principles found in branchings in D. marginata.


Subject(s)
Dracaena/growth & development , Magnetic Resonance Imaging , Plant Shoots/growth & development , Imaging, Three-Dimensional , Signal-To-Noise Ratio
16.
J Neural Eng ; 15(4): 041002, 2018 08.
Article in English | MEDLINE | ID: mdl-29513262

ABSTRACT

Patients suffering from neuronal degenerative diseases are increasingly being equipped with neural implants to treat symptoms or restore functions and increase their quality of life. Magnetic resonance imaging (MRI) would be the modality of choice for the diagnosis and compulsory postoperative monitoring of such patients. However, interactions between the magnetic resonance (MR) environment and implants pose severe health risks to the patient. Nevertheless, neural implant recipients regularly undergo MRI examinations, and adverse events are rarely reported. However, this should not imply that the procedures are safe. More than 300 000 cochlear implant recipients are excluded from MRI, unless the indication outweighs the excruciating pain. For 75 000 deep brain stimulation (DBS) recipients quite the opposite holds true: MRI is considered an essential part of the implantation procedure and some medical centres deliberately exceed safety regulations, which they refer to as crucially impractical. Permanent MRI-related neurological dysfunctions in DBS recipients have occurred in the past when manufacturer recommendations were exceeded. Within the last few decades, extensive effort has been invested to identify, characterise and quantify the occurring interactions. Yet today we are still far from a satisfying solution concerning a safe and beneficial MR procedure for all implant recipients. To contribute, we intend to raise awareness of the growing concern, summon the community to stop absurdities and instead improve the situation for the increasing number of patients. Therefore, we review implant safety in the MRI literature from an engineering point of view, with a focus on cochlear and DBS implants as success stories of neural implants in clinical practice. We briefly explain fundamental phenomena which can lead to patient harm, and point out breakthroughs and errors made. Then, we end with conclusions and strategies to avoid future implants from being contraindicated in MR examinations. We believe that implant recipients should enter MRI, but before doing so, it should be made sure that the procedure is reasonable.


Subject(s)
Cochlear Implants/standards , Deep Brain Stimulation/standards , Electrodes, Implanted/standards , Magnetic Resonance Imaging/standards , Cerebral Hemorrhage/diagnosis , Cerebral Hemorrhage/etiology , Cochlear Implantation/adverse effects , Cochlear Implantation/standards , Cochlear Implantation/trends , Cochlear Implants/adverse effects , Cochlear Implants/trends , Deep Brain Stimulation/adverse effects , Deep Brain Stimulation/trends , Electrodes, Implanted/adverse effects , Electrodes, Implanted/trends , Humans , Magnetic Resonance Imaging/adverse effects , Magnetic Resonance Imaging/trends , Pain/diagnosis , Pain/etiology , Prosthesis Failure/etiology
17.
PLoS One ; 12(11): e0187596, 2017.
Article in English | MEDLINE | ID: mdl-29117252

ABSTRACT

PURPOSE: Cardiovascular diseases remain the number one death cause worldwide. Preclinical 4D flow phase contrast magnetic resonance imaging can provide substantial insights in the analysis of aortic pathophysiologies in various animal models. These insights may allow a better understanding of pathophysiologies, therapy monitoring, and can possibly be translated to humans. This study provides a framework to acquire the velocity field within the aortic arch. It analyses important flow values at different locations within the aortic arch. Imaging parameters with high temporal and spatial resolution are provided, that still allow combining this time-consuming method with other necessary imaging-protocols. METHODS: A new setup was established where a prospectively gated 4D phase contrast sequence is combined with a highly sensitive cryogenic coil on a preclinical magnetic resonance scanner. The sequence was redesigned to maintain a close to steady state condition of the longitudinal magnetization and hence to overcome steady state artifacts. Imaging parameters were optimized to provide high spatial and temporal resolution. Pathline visualizations were generated from the acquired velocity data in order to display complex flow patterns. RESULTS: Our setup allows data acquisition with at least two times the rate than that of previous publications based on Cartesian encoding, at an improved image quality. The "steady state" sequence reduces observed artifacts and provides uniform image intensity over the heart cycle. This made possible quantification of blood speed and wall shear stress (WSS) within the aorta and its branches. The highest velocities were observed in the ascending aorta with 137.5 ± 8 cm/s. Peak velocity values in the Brachiocephalic trunk were 57 ± 12 cm/s. Quantification showed that the peak flow occurs around 20 ms post R-wave in the ascending aorta. The highest mean axial wall shear stress was observed in the analysis plane between the left common carotid artery (LCCA) and the left subclavian artery. A stable image quality allows visualizing complex flow patterns by means of streamlines and for the first time, to the best of our knowledge, pathline visualizations from 4D flow MRI in mice. CONCLUSION: The described setup allows analyzing pathophysiologies in mouse models of cardiovascular diseases in the aorta and its branches with better image quality and higher spatial and temporal resolution than previous Cartesian publications. Pathlines provide an advanced analysis of complex flow patterns in the murine aorta. An imaging protocol is provided that offers the possibility to acquire the aortic arch at sufficiently high resolution in less than one hour. This allows the combination of the flow assessment with other multifunctional imaging protocols.


Subject(s)
Aorta, Thoracic/anatomy & histology , Magnetic Resonance Imaging/methods , Microscopy, Phase-Contrast/methods , Animals , Blood Flow Velocity/physiology , Image Interpretation, Computer-Assisted , Mice , Systole/physiology
18.
NMR Biomed ; 30(8)2017 Aug.
Article in English | MEDLINE | ID: mdl-28370576

ABSTRACT

In this initial work, the in vivo degradation of 17 O-labeled glucose was studied during cellular glycolysis. To monitor cellular glucose metabolism, direct 17 O-magnetic resonance spectroscopy (MRS) was used in the mouse brain at 9.4 T. Non-localized spectra were acquired with a custom-built transmit/receive (Tx/Rx) two-turn surface coil and a free induction decay (FID) sequence with a short TR of 5.4 ms. The dynamics of labeled oxygen in the anomeric 1-OH and 6-CH2 OH groups was detected using a Hankel-Lanczos singular value decomposition (HLSVD) algorithm for water suppression. Time-resolved 17 O-MRS (temporal resolution, 42/10.5 s) was performed in 10 anesthetized (1.25% isoflurane) mice after injection of a 2.2 M solution containing 2.5 mg/g body weight of differently labeled 17 O-glucose dissolved in 0.9% physiological saline. From a pharmacokinetic model fit of the H217 O concentration-time course, a mean apparent cerebral metabolic rate of 17 O-labeled glucose in mouse brain of CMRGlc  = 0.07 ± 0.02 µmol/g/min was extracted, which is of the same order of magnitude as a literature value of 0.26 ± 0.06 µmol/g/min reported by 18 F-fluorodeoxyglucose (18 F-FDG) positron emission tomography (PET). In addition, we studied the chemical exchange kinetics of aqueous solutions of 17 O-labeled glucose at the C1 and C6 positions with dynamic 17 O-MRS. In conclusion, the results of the exchange and in vivo experiments demonstrate that the C6-17 OH label in the 6-CH2 OH group is transformed only glycolytically by the enzyme enolase into the metabolic end-product H217 O, whereas C1-17 OH ends up in water via direct hydrolysis as well as glycolysis. Therefore, dynamic 17 O-MRS of highly labeled 17 O-glucose could provide a valuable non-radioactive alternative to FDG PET in order to investigate glucose metabolism.


Subject(s)
Brain/metabolism , Glucose/metabolism , Magnetic Resonance Spectroscopy , Oxygen Isotopes/metabolism , Animals , Blood Glucose/metabolism , Confidence Intervals , Glucose/chemistry , Male , Mice, Inbred C57BL , Solutions , Time Factors , Water
19.
Article in English | MEDLINE | ID: mdl-29541005

ABSTRACT

High signal-to-noise ratio (SNR) of the NMR signal has always been a key target that drives massive research effort in many fields. Among several parameters, a high filling factor of the MR coil has proven to boost the SNR. In case of small-volume samples, a high filling factor and thus a high SNR can be achieved through miniaturizing the MR coil. However, under certain circumstances, this can be impractical. In this paper, we present an extensive theoretical and experimental investigation of the inductively coupled LC resonator and the magnetic Lenz lens as two candidate approaches that can enhance the SNR in such circumstances. The results demonstrate that the narrow-band LC resonator is superior in terms of SNR, while the non-tuned nature of the Lenz lens makes it preferable in broadband applications.

20.
Magn Reson Med ; 77(4): 1544-1552, 2017 04.
Article in English | MEDLINE | ID: mdl-27271292

ABSTRACT

PURPOSE: Implementing new magnetic resonance experiments, or sequences, often involves extensive programming on vendor-specific platforms, which can be time consuming and costly. This situation is exacerbated when research sequences need to be implemented on several platforms simultaneously, for example, at different field strengths. This work presents an alternative programming environment that is hardware-independent, open-source, and promotes rapid sequence prototyping. METHODS: A novel file format is described to efficiently store the hardware events and timing information required for an MR pulse sequence. Platform-dependent interpreter modules convert the file to appropriate instructions to run the sequence on MR hardware. Sequences can be designed in high-level languages, such as MATLAB, or with a graphical interface. Spin physics simulation tools are incorporated into the framework, allowing for comparison between real and virtual experiments. RESULTS: Minimal effort is required to implement relatively advanced sequences using the tools provided. Sequences are executed on three different MR platforms, demonstrating the flexibility of the approach. CONCLUSION: A high-level, flexible and hardware-independent approach to sequence programming is ideal for the rapid development of new sequences. The framework is currently not suitable for large patient studies or routine scanning although this would be possible with deeper integration into existing workflows. Magn Reson Med 77:1544-1552, 2017. © 2016 International Society for Magnetic Resonance in Medicine.


Subject(s)
Image Interpretation, Computer-Assisted/instrumentation , Image Interpretation, Computer-Assisted/methods , Magnetic Resonance Imaging/instrumentation , Magnetic Resonance Imaging/methods , Signal Processing, Computer-Assisted/instrumentation , Software , Equipment Design , Pilot Projects
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