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1.
Nat Plants ; 4(7): 473-484, 2018 07.
Article in English | MEDLINE | ID: mdl-29892093

ABSTRACT

Rose is the world's most important ornamental plant, with economic, cultural and symbolic value. Roses are cultivated worldwide and sold as garden roses, cut flowers and potted plants. Roses are outbred and can have various ploidy levels. Our objectives were to develop a high-quality reference genome sequence for the genus Rosa by sequencing a doubled haploid, combining long and short reads, and anchoring to a high-density genetic map, and to study the genome structure and genetic basis of major ornamental traits. We produced a doubled haploid rose line ('HapOB') from Rosa chinensis 'Old Blush' and generated a rose genome assembly anchored to seven pseudo-chromosomes (512 Mb with N50 of 3.4 Mb and 564 contigs). The length of 512 Mb represents 90.1-96.1% of the estimated haploid genome size of rose. Of the assembly, 95% is contained in only 196 contigs. The anchoring was validated using high-density diploid and tetraploid genetic maps. We delineated hallmark chromosomal features, including the pericentromeric regions, through annotation of transposable element families and positioned centromeric repeats using fluorescent in situ hybridization. The rose genome displays extensive synteny with the Fragaria vesca genome, and we delineated only two major rearrangements. Genetic diversity was analysed using resequencing data of seven diploid and one tetraploid Rosa species selected from various sections of the genus. Combining genetic and genomic approaches, we identified potential genetic regulators of key ornamental traits, including prickle density and the number of flower petals. A rose APETALA2/TOE homologue is proposed to be the major regulator of petal number in rose. This reference sequence is an important resource for studying polyploidization, meiosis and developmental processes, as we demonstrated for flower and prickle development. It will also accelerate breeding through the development of molecular markers linked to traits, the identification of the genes underlying them and the exploitation of synteny across Rosaceae.


Subject(s)
Genome, Plant/genetics , Rosa/genetics , Centromere/genetics , Chromosomes, Plant/genetics , Flowers/anatomy & histology , Flowers/genetics , Fragaria/genetics , Genetic Variation/genetics , Haploidy , In Situ Hybridization, Fluorescence , Phylogeny , Quantitative Trait Loci/genetics , Quantitative Trait, Heritable , Rosa/anatomy & histology , Sequence Analysis, DNA , Synteny/genetics
2.
Ukr Biochem J ; 88(4): 29-39, 2016.
Article in English | MEDLINE | ID: mdl-29235755

ABSTRACT

Effects of the different modes of administration of dichlorotetra-µ-isobutyratodirhenium(ІІІ) ­ І ­ (in water solution, liposomes, nanoliposomes and together with cisplatin ­ in the rhenium-platinum system) on the intensity of lipid peroxidation (LP) in blood plasma and the activity of the erythrocyte antioxidant enzymes were investigated on the model of tumor growth. A decrease in the concentration of TBA-active substances caused by dirhenium compounds was shown to be independent of the administration mode and the extent of the tumor growth inhibition. I was four-times more effective in inhibition of the LP burst than any known antioxidant. I induced the increasing activity of erythrocyte superoxide dismutase and decreasing activity of catalase. In vitro experiments with native superoxide dismutase, the interaction of І with following activation of the active center of the enzyme was confirmed and the superoxide dismutase activity of І was shown, that may contribute to the enhancement of the enzyme activity in vivo. The cluster rhenium compounds may be promising nontoxic potent antioxidants capable of deactivating superoxide radicals.


Subject(s)
Antineoplastic Agents/pharmacology , Antioxidants/pharmacology , Carcinoma/drug therapy , Coordination Complexes/pharmacology , Platinum/chemistry , Rhenium/chemistry , Animals , Antineoplastic Agents/chemical synthesis , Antioxidants/chemical synthesis , Carcinoma/blood , Carcinoma/metabolism , Carcinoma/pathology , Catalase/blood , Coordination Complexes/chemical synthesis , Enzyme Activation/drug effects , Erythrocytes/drug effects , Erythrocytes/enzymology , Glutathione Peroxidase/metabolism , Lipid Peroxidation/drug effects , Liposomes/administration & dosage , Nanoparticles/administration & dosage , Neoplasm Transplantation , Oxidative Stress/drug effects , Rats , Rats, Wistar , Superoxide Dismutase/blood , Thiobarbituric Acid Reactive Substances/metabolism
4.
Commun Agric Appl Biol Sci ; 72(2): 295-301, 2007.
Article in English | MEDLINE | ID: mdl-18399455

ABSTRACT

Powdery mildew (Podosphaera pannoso) is one of the most serious fungal diseases on both greenhouse and field grown roses. Improvement of disease resistance is a major selection aim for garden rose breeders. For rose cultivars, being mostly tetraptoid, it is complicated to develop molecular markers for resistance. Hence, a segregating diploid population was established from a cross between 'Yesterday', a commercial available rose variety susceptible to powdery mildew, and R. wichurana, a rose species with resistance to certain isolates of powdery mildew. A progeny of 94 seedlings was planted in the field. The segregation of powdery mildew resistance was studied in this population by means of a bioassay with two different monoconidial isolates of powdery mildew. Based on the response to these inoculations different groups were selected: a first group of genotypes was susceptible to both isolates, other groups were susceptible to one of both isolates and a last group was resistant to both tested isolates. The disease resistance inherits for both isolates in a quantitative way. A genetic map based on AFLP and SSR markers was established and will be used for QTL analysis of powdery mildew resistance.


Subject(s)
Ascomycota/physiology , Immunity, Innate/genetics , Plant Diseases/genetics , Polymorphism, Genetic , Quantitative Trait Loci , Rosa/genetics , Chromosome Mapping , Diploidy , Genetic Linkage , Genetic Markers , Genotype , Plant Diseases/microbiology , Rosa/microbiology
5.
J Evol Biol ; 19(2): 635-48, 2006 Mar.
Article in English | MEDLINE | ID: mdl-16599938

ABSTRACT

An allopolyploid complex with high genomic integrity has been studied. Dogroses transmit only seven chromosomes (from seven bivalents) through the pollen, whereas 21, 28 or 35 chromosomes (from seven bivalents and 14, 21 or 28 univalents) come from the egg cells. Seedlings derived from two interspecific crosses were analysed with flow cytometry and molecular markers to determine ploidy level, mode of reproduction and genomic constitution. Evidence was obtained for the formation of unreduced male and female gametes, which can take part in fertilization (producing seedlings with higher ploidy than the parental plants) or in apomictic reproduction. Random amplified polymorphic DNA (RAPD) and microsatellite analyses indicated that three seedlings (5%) were derived through apomixis, whereas the other 49 were hybrids. Bivalent formation appears to involve chromosomes that consistently share the same microsatellite alleles. Allele-sharing between the maternally transmitted and highly conserved univalent-forming chromosomes reflected the taxonomic distance between different genotypes. The frequently recombining bivalent-forming chromosomes were taxonomically less informative.


Subject(s)
DNA, Plant/genetics , Microsatellite Repeats/genetics , Polyploidy , Rosa/genetics , Crosses, Genetic , Flow Cytometry , Flowers/genetics , Genome, Plant , Plant Roots/genetics , Ploidies , Random Amplified Polymorphic DNA Technique , Rosa/classification , Sweden
6.
Stomatologiia (Mosk) ; 72(2): 67-8, 1993.
Article in Russian | MEDLINE | ID: mdl-8048139

ABSTRACT

Presents the data of analysis of medical files of therapeutic institutions, of questionnaires distributed among dentists, and the results of examinations of 883 children aged 3 to 6, living in 19 towns of Byelorussia. The incidence and clinical picture of a number of dental diseases were found changed in the children living in the regions contaminated with radionuclides, as well as the general well-being of these children.


Subject(s)
Accidents, Occupational , Mouth Diseases/epidemiology , Nuclear Reactors , Power Plants , Radiation Injuries/epidemiology , Air Pollution, Radioactive/adverse effects , Child , Child, Preschool , Ecology , Humans , Incidence , Mouth Diseases/etiology , Radiation Injuries/complications , Republic of Belarus/epidemiology , Ukraine
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