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1.
Int J Mol Sci ; 24(20)2023 Oct 13.
Article in English | MEDLINE | ID: mdl-37894818

ABSTRACT

Essential oils (EOs) are of commercial importance for medicine, food, cosmetics, the perfume industry, and agriculture. In plants, EOs, like the wax cover, serve as protection against abiotic stresses, such as high temperatures and water deficiency. The use of spraying with exogenous hormones of aromatic plants affects the accumulation and composition of volatile compounds, as well as tolerance to abiotic stress. As a result of cytokinin treatment with 6-BAP (6-benzylaminopurine) (200 mg L-l) of Anetum graveolens L. "Uzory" and "Rusich" varieties, several responses to its action were revealed: a change in the division of leaf blades, inhibition of flowering, an increase in the content of EO and its main components α-phellandrene and p-cymene in leaves, and limonene in umbels and fruits. It was revealed that the increased accumulation of EO in dill leaves was longer with sufficient moisture. In contrast, under conditions of heat and water deficiency, the effect of 6-BAP treatment on accumulations of the EO in leaves was short-lived and did not appear on umbels and fruits. The study of the cytokinin effect on a fine structure of a wax cover on the adaxial side of leaves by scanning electron microscopy revealed a change in its elements (from amorphous layers with scales to thin tubules), which probably increased the sensitivity of leaves to water deficiency and, consequently, led to a decrease in the biosynthetic activity of leaf tissue. Thus, 6-BAP had an impact on the adaptive properties of dill plants, prolonging the "youth" of vegetative organs and the ability to EO biosynthesis under conditions of sufficient moisture.


Subject(s)
Anethum graveolens , Oils, Volatile , Anethum graveolens/chemistry , Oils, Volatile/pharmacology , Plant Leaves , Fruit , Cytokinins , Water
2.
Biochim Biophys Acta Mol Cell Res ; 1870(7): 119539, 2023 10.
Article in English | MEDLINE | ID: mdl-37479188

ABSTRACT

Previous studies have shown that cytoplasmic K+ release and the associated E2 â†’ E1 conformational change of the Na+,K+-ATPase is a major rate-determining step of the enzyme's ion pumping cycle and hence a prime site of acute regulatory intervention. From the ionic strength dependence of the enzyme's distribution between the E2 and E1 states, it has also been found that E2 is stabilized by an electrostatic attraction. Any disruption of this electrostatic attraction would, thus, have profound effects on the rate of ion pumping. The aim of this paper is to identify the location of this interaction. Using enhanced-sampling molecular dynamics simulations with a predicted N-terminal structure added to the X-ray crystal structure of the Na+,K+-ATPase, a previously postulated salt bridge between Lys32 and Glu233 (rat sequence numbering) of the enzyme's α-subunit can be excluded. The residues never approach closely enough to form a salt bridge. In contrast, strong interactions with anionic lipid head groups were seen. To investigate the possibility of a protein-lipid interaction experimentally, the surface charge density of Na+,K+-ATPase-containing membrane fragments was estimated from zeta potential measurements to be 0.019 (± 0.001) C m-2. This is in good agreement with the charge density previously determined to be responsible for stabilization of the E2 state of 0.023 (± 0.009) C m-2 and the membrane charge density estimated here from published electron-microscopic images of 0.018C m-2. The results are, therefore, consistent with an interaction of the Na+,K+-ATPase α-subunit N-terminus with negatively-charged lipid head groups of the neighbouring cytoplasmic membrane surface as the origin of the electrostatic interaction stabilising the E2 state.


Subject(s)
Molecular Dynamics Simulation , Sodium-Potassium-Exchanging ATPase , Animals , Rats , Sodium-Potassium-Exchanging ATPase/genetics , Sodium-Potassium-Exchanging ATPase/metabolism , Protein Conformation , Cell Membrane/metabolism , Sodium/metabolism , Lipids
3.
Phys Rev E ; 108(6-1): 064131, 2023 Dec.
Article in English | MEDLINE | ID: mdl-38243541

ABSTRACT

The ±J Ising model is a simple frustrated spin model, where the exchange couplings independently take the discrete value -J with probability p and +J with probability 1-p. It is especially appealing due to its connection to quantum error correcting codes. Here, we investigate the nonequilibrium critical behavior of the two-dimensional ±J Ising model, after a quench from different initial conditions to a critical point T_{c}(p) on the paramagnetic-ferromagnetic (PF) transition line, especially above, below, and at the multicritical Nishimori point (NP). The dynamical critical exponent z_{c} seems to exhibit nonuniversal behavior for quenches above and below the NP, which is identified as a preasymptotic feature due to the repulsive fixed point at the NP, whereas for a quench directly to the NP, the dynamics reaches the asymptotic regime with z_{c}≃6.02(6). We also consider the geometrical spin clusters (of like spin signs) during the critical dynamics. Each universality class on the PF line is uniquely characterized by the stochastic Loewner evolution with corresponding parameter κ. Moreover, for the critical quenches from the paramagnetic phase, the model, irrespective of the frustration, exhibits an emergent critical percolation topology at the large length scales.

4.
Eur Phys J E Soft Matter ; 45(3): 23, 2022 Mar 14.
Article in English | MEDLINE | ID: mdl-35286503

ABSTRACT

We present theoretical description of dynamics of the refractive index in Langmuir monolayers subjected to continuous-wave (CW) laser radiation, using the mechanism of the local temperature fluctuations. Such mechanism can be applied to all monolayer systems that consist of rodlike molecules. The CW laser radiation induces conformational transitions of molecules in monolayer, which, after some time being in the excited state, come back into the ground state, thus renewing their initial shape and releasing energy into the medium, locally heating it. This leads to the local temperature change, which promotes new conformational transitions of molecules. Such nonlinear energy redistribution mechanism permits the conformational transition boundary to move. The existence of the transitions is seen from the change of the refractive index.


Subject(s)
Refractometry , Molecular Conformation
5.
J Cardiothorac Vasc Anesth ; 36(1): 22-29, 2022 01.
Article in English | MEDLINE | ID: mdl-34059438

ABSTRACT

Diagnostic point-of-care ultrasound (PoCUS) has emerged as a powerful tool to help anesthesiologists guide patient care in both the perioperative setting and the subspecialty arenas. Although anesthesiologists can turn to guideline statements pertaining to other aspects of ultrasound use, to date there remains little in the way of published guidance regarding diagnostic PoCUS. To this end, in 2018, the American Society of Anesthesiologists chartered an ad hoc committee consisting of 23 American Society of Anesthesiologists members to provide recommendations on this topic. The ad hoc committee convened and developed a committee work product. This work product was updated in 2021 by an expert panel of the ad hoc committee to produce the document presented herein. The document, which represents the consensus opinion of a group of practicing anesthesiologists with established expertise in diagnostic ultrasound, addresses the following issues: (1) affirms the practice of diagnostic PoCUS by adequately trained anesthesiologists, (2) identifies the scope of practice of diagnostic PoCUS relevant to anesthesiologists, (3) suggests the minimum level of training needed to achieve competence, (4) provides recommendations for how diagnostic PoCUS can be used safely and ethically, and (5) provides broad guidance about diagnostic ultrasound billing.


Subject(s)
Point-of-Care Systems , Point-of-Care Testing , Anesthesiologists , Humans , Ultrasonography
6.
PRX quantum ; 3(3)2022.
Article in English | MEDLINE | ID: mdl-36624758

ABSTRACT

We propose a quantum algorithm for inferring the molecular nuclear spin Hamiltonian from time-resolved measurements of spin-spin correlators, which can be obtained via nuclear magnetic resonance (NMR). We focus on learning the anisotropic dipolar term of the Hamiltonian, which generates dynamics that are challenging to classically simulate in some contexts. We demonstrate the ability to directly estimate the Jacobian and Hessian of the corresponding learning problem on a quantum computer, allowing us to learn the Hamiltonian parameters. We develop algorithms for performing this computation on both noisy near-term and future fault-tolerant quantum computers. We argue that the former is promising as an early beyond-classical quantum application since it only requires evolution of a local spin Hamiltonian. We investigate the example of a protein (ubiquitin) confined on a membrane as a benchmark of our method. We isolate small spin clusters, demonstrate the convergence of our learning algorithm on one such example, and then investigate the learnability of these clusters as we cross the ergodic to non-ergodic phase transition by suppressing the dipolar interaction. We see a clear correspondence between a drop in the multifractal dimension measured across many-body eigenstates of these clusters, and a transition in the structure of the Hessian of the learning cost function (from degenerate to learnable). Our hope is that such quantum computations might enable the interpretation and development of new NMR techniques for analyzing molecular structure.

7.
Phys Rev E ; 102(1-1): 012217, 2020 Jul.
Article in English | MEDLINE | ID: mdl-32794964

ABSTRACT

Anomalous behavior of a nonlinear climate-vegetation model governed by the multiplicative and additive noises is revealed on the basis of stochastic sensitivity analysis. A specific feature of this model is the bistability with the coexistence of "snowball" equilibrium and "warm" attractor in the form of equilibrium or cycle. It is found that multiplicative and additive noises shift probabilistic distribution in opposite directions. The multiplicative noise introduced into the death rate of vegetation changes the dispersion of random states and their localization in the phase diagram. This type of noise cools down the system and is responsible for its transition to the snowball state. On the contrary, the additive noise warms up the climate with increasing noise intensity. A cumulative effect of multiplicative and additive noises occurs under their simultaneous influence. This effect determining the evolutionary behavior of a climate-vegetation system depends on the ratio of intensities of these noises.

8.
Eur Phys J E Soft Matter ; 43(1): 1, 2020 Jan 20.
Article in English | MEDLINE | ID: mdl-31953594

ABSTRACT

This research proposes a general approach to determine the peculiarity of the interaction between colloidal particles in different liquid crystals. The main idea of this approach is in the definition of the colloidal particle as a source of the possible deformation of the ground state of the director field distribution. The ground state imposes restrictions on possible deformations and determines the peculiarity of the interaction between colloidal particles. Based on this approach, the Coulomb-like interaction between dipole particles in a cholesteric liquid crystal and a crucial change in the character of the interaction in a smectic liquid crystal are predicted.

9.
R Soc Open Sci ; 5(4): 171531, 2018 Apr.
Article in English | MEDLINE | ID: mdl-29765634

ABSTRACT

Motivated by the extremely important role of the Earth's vegetation dynamics in climate changes, we study the stochastic variability of a simple climate-vegetation system. In the case of deterministic dynamics, the system has one stable equilibrium and limit cycle or two stable equilibria corresponding to two opposite (cold and warm) climate-vegetation states. These states are divided by a separatrix going across a point of unstable equilibrium. Some possible stochastic scenarios caused by different externally induced natural and anthropogenic processes inherit properties of deterministic behaviour and drastically change the system dynamics. We demonstrate that the system transitions across its separatrix occur with increasing noise intensity. The climate-vegetation system therewith fluctuates, transits and localizes in the vicinity of its attractor. We show that this phenomenon occurs within some critical range of noise intensities. A noise-induced shift into the range of smaller global average temperatures corresponding to substantial oscillations of the Earth's vegetation cover is revealed. Our analysis demonstrates that the climate-vegetation interactions essentially contribute to climate dynamics and should be taken into account in more precise and complex models of climate variability.

10.
Astrobiology ; 18(1): 86-99, 2018 01.
Article in English | MEDLINE | ID: mdl-29345987

ABSTRACT

Critical thinking and scientific reasoning are central to higher education in the United States, but many courses (in-person and online) teach students information about science much more than they teach the actual process of science and its associated knowledge and skills. In the online arena specifically, the tools available for course construction exacerbate this problem by making it difficult to build the types of active learning activities that research shows to be the most effective. Here, we present a report on Habitable Worlds, offered by Arizona State University for 12 semesters over the past 6 years. This is a unique online course that uses an array of novel technologies to deliver an active, inquiry-driven learning experience. Learning outcomes and quantitative data from more than 3000 students demonstrate the success of our approach but also identify several remaining challenges. The design and development of this course offers valuable lessons for instructional designers and educators who are interested in fully capitalizing on the capabilities of 21st-century technology to achieve educational goals. Key Words: Online education-Active learning-SETI-Astrobiology-Teaching. Astrobiology 17, 86-99.


Subject(s)
Curriculum , Ecosystem , Education, Distance/methods , Exobiology/education , Extraterrestrial Environment , Internet , United States , Universities/organization & administration
11.
Philos Trans A Math Phys Eng Sci ; 376(2113)2018 Feb 28.
Article in English | MEDLINE | ID: mdl-29311213

ABSTRACT

The time-dependent process of directional crystallization in the presence of a mushy layer is considered with allowance for arbitrary fluctuations in the atmospheric temperature and friction velocity. A nonlinear set of mushy layer equations and boundary conditions is solved analytically when the heat and mass fluxes at the boundary between the mushy layer and liquid phase are induced by turbulent motion in the liquid and, as a result, have the corresponding convective form. Namely, the 'solid phase-mushy layer' and 'mushy layer-liquid phase' phase transition boundaries as well as the solid fraction, temperature and concentration (salinity) distributions are found. If the atmospheric temperature and friction velocity are constant, the analytical solution takes a parametric form. In the more common case when they represent arbitrary functions of time, the analytical solution is given by means of the standard Cauchy problem. The deterministic and stochastic behaviour of the phase transition process is analysed on the basis of the obtained analytical solutions. In the case of stochastic fluctuations in the atmospheric temperature and friction velocity, the phase transition interfaces (mushy layer boundaries) move faster than in the deterministic case. A cumulative effect of these noise contributions is revealed as well. In other words, when the atmospheric temperature and friction velocity fluctuate simultaneously due to the influence of different external processes and phenomena, the phase transition boundaries move even faster. This article is part of the theme issue 'From atomistic interfaces to dendritic patterns'.This article is part of the theme issue 'From atomistic interfaces to dendritic patterns'.

12.
Phys Rev Lett ; 117(15): 155301, 2016 Oct 07.
Article in English | MEDLINE | ID: mdl-27768342

ABSTRACT

We report on the anisotropic expansion of ultracold bosonic dysprosium gases at temperatures above quantum degeneracy and develop a quantitative theory to describe this behavior. The theory expresses the postexpansion aspect ratio in terms of temperature and microscopic collisional properties by incorporating Hartree-Fock mean-field interactions, hydrodynamic effects, and Bose-enhancement factors. Our results extend the utility of expansion imaging by providing accurate thermometry for dipolar thermal Bose gases. Furthermore, we present a simple method to determine scattering lengths in dipolar gases, including near a Feshbach resonance, through observation of thermal gas expansion.

13.
Proc Natl Acad Sci U S A ; 113(3): 536-41, 2016 Jan 19.
Article in English | MEDLINE | ID: mdl-26719416

ABSTRACT

Strictly speaking, the laws of the conventional statistical physics, based on the equipartition postulate [Gibbs J W (1902) Elementary Principles in Statistical Mechanics, developed with especial reference to the rational foundation of thermodynamics] and ergodicity hypothesis [Boltzmann L (1964) Lectures on Gas Theory], apply only in the presence of a heat bath. Until recently this restriction was believed to be not important for real physical systems because a weak coupling to the bath was assumed to be sufficient. However, this belief was not examined seriously until recently when the progress in both quantum gases and solid-state coherent quantum devices allowed one to study the systems with dramatically reduced coupling to the bath. To describe such systems properly one should revisit the very foundations of statistical mechanics. We examine this general problem for the case of the Josephson junction chain that can be implemented in the laboratory and show that it displays a novel high-temperature nonergodic phase with finite resistance. With further increase of the temperature the system undergoes a transition to the fully localized state characterized by infinite resistance and exponentially long relaxation.

14.
Article in English | MEDLINE | ID: mdl-26651819

ABSTRACT

This corrects the article DOI: 10.1103/PhysRevE.92.042505.

15.
Article in English | MEDLINE | ID: mdl-26565263

ABSTRACT

We propose a theoretical description of the interaction mediated by a nematic-liquid-crystal host with different Frank elastic constants. A general expression for the energy of such an interaction between colloidal particles of arbitrary size and shape suspended in a homeotropic cell is obtained. In the cells of large thickness, the presented potential converges to that found previously for small particles in the nematic bulk. In general, our results confirm the validity of the one-constant approximation for weakly elastically anisotropic nematic liquid crystals. For nematics with a high splay-to-bend ratio we predict a larger range of the interaction. Using the dependence of this range on the elastic constants, we show that there exists a qualitative similarity between the interactions in a nematic and in a smectic-A phase. It manifests itself, in particular, in a decrease of the angle between a chain of quadrupole particles and the uniform far-field director across a nematic-smectic-A phase transition. We also demonstrate that the anisotropy of the elastic constants can lead to the formation of thermodynamically stable linear superstructures of asymmetric particles (elastic monopoles) with large, compared to usual dipole chains, interparticle distances.

17.
Article in English | MEDLINE | ID: mdl-25215675

ABSTRACT

We predict theoretically the existence of a class of colloidal structures in nematic liquid crystal (NLC) cells, which are induced by surface patterns on the plates of the cell (like cells with UV-irradiated polyamide surfaces using micron sized masks in front of the cell). These bulk structures arise from nonuniform boundary conditions for the director distortions at the confining surfaces. In particular, we demonstrate that quadrupole spherical particles (like spheres with boojums or Saturn-ring director configurations) form a square lattice inside a planar NLC cell, which has checkerboard patterns on both its plates.


Subject(s)
Colloids/chemistry , Liquid Crystals/chemistry , Models, Chemical , Elasticity , Surface Properties
18.
Phys Rev Lett ; 112(16): 167001, 2014 Apr 25.
Article in English | MEDLINE | ID: mdl-24815663

ABSTRACT

We have studied the low-energy excitations in a minimalistic protected Josephson circuit which contains two basic elements (rhombi) characterized by the π periodicity of the Josephson energy. Novel design of these elements, which reduces their sensitivity to the offset charge fluctuations, has been employed. We have observed that the lifetime T1 of the first excited state of this quantum circuit in the protected regime is increased up to 70 µs, a factor of ∼100 longer than that in the unprotected state. The quality factor ω01T1 of this qubit exceeds 106. Our results are in agreement with theoretical expectations; they demonstrate the feasibility of symmetry protection in the rhombus-based qubits fabricated with existing technology.

19.
Article in English | MEDLINE | ID: mdl-24730862

ABSTRACT

We propose a simple theoretical model which explains the formation of dipolar two- (2D) and three-dimensional (3D) colloidal structures in nematic liquid crystals. The colloidal particles are treated as effective hard spheres interacting via their elastic dipole, quadrupole, and octopole moments. It is shown that the octopole moment plays an important role in the formation of 2D and 3D nematic colloidal crystals. We generalize this assumption to the case of an external electric field and theoretically explain a giant electrostriction effect in 3D crystals observed recently.

20.
Euro Surveill ; 19(7): 20708, 2014 Feb 20.
Article in English | MEDLINE | ID: mdl-24576473

ABSTRACT

An emergency response was triggered by recovery of wild poliovirus type 1 (WPV1) of the South Asia (SOAS) lineage from sewage in southern Israel in April 2013 during routine environmental surveillance. Public health risk assessment necessitated intensification of environmental surveillance in order to facilitate countrywide monitoring of WPV1-SOAS circulation. This involved increasing sampling frequency and broadening the geographical area, for better coverage of the population at risk, as well as modifying sewage testing algorithms to accommodate a newly developed WPV1-SOAS-specific quantitative real-time RT-PCR assay for screening of RNA extracted directly from sewage concentrates, in addition to standard virus isolation. Intensified surveillance in 74 sites across Israel between 1 February and 31 August 2013 documented a sustained high viral load of WPV1-SOAS in sewage samples from six Bedouin settlements and two cities with Jewish and Arab populations in the South district. Lower viral loads and intermittent detection were documented in sampling sites representing 14 mixed communities in three of the five health districts in central and northern Israel. Environmental surveillance plays a fundamental role in routine monitoring of WPV circulation in polio-free countries. The rapid assay specific for the circulating strain facilitated implementation of intensified surveillance and informed the public health response and decision-making.


Subject(s)
Environmental Monitoring , Poliomyelitis/epidemiology , Poliovirus/isolation & purification , Sewage/virology , Humans , Israel/epidemiology , Poliomyelitis/diagnosis , Poliomyelitis/virology , Poliovirus/genetics , Population Surveillance , Public Health , Real-Time Polymerase Chain Reaction , Risk Assessment
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