Draft genome sequences of biofuel production microalgae Auxenochlorella protothecoides and Chlorella sorokiniana.

Green microalgae are used in biofuel production. To contribute to the knowledge of the Chlorellaceae family, the de novo assembled draft genome sequences of Auxenochlorella protothecoides Kruger and Chlorella sorokiniana Shihira and Krauss are presented.

The Complete Genome Sequence of Bacillus thuringiensis Strain ATCC 13367 Features a cry-Containing Chromosome.

We report the high-quality closed genome sequence of Bacillus thuringiensis ATCC 13367, which is used as a bioinsecticide. The genome features a 328-kbp plasmid and a 5.8-Mbp chromosome. The genome is atypical for the species since it lacks a plasmid pesticidal crystal protein (cry) gene and instead features a chromosomal cry gene like that of B. thuringiensis HER1410.

Framework for integrated MRI average of the spinal cord white and gray matter: the MNI-Poly-AMU template.

The field of spinal cord MRI is lacking a common template, as existing for the brain, which would allow extraction of multi-parametric data (diffusion-weighted, magnetization transfer, etc.) without user bias, thereby facilitating group analysis and multi-center studies. This paper describes a framework to produce an unbiased average anatomical template of the human spinal cord. The template was created by co-registering T2-weighted images (N = 16 healthy volunteers) using a series of pre-processing steps followed by non-linear registration. A white and gray matter probabilistic template was then merged to the average anatomical template, yielding the MNI-Poly-AMU template, which currently covers vertebral levels C1 to T6. New subjects can be registered to the template using a dedicated image processing pipeline. Validation was conducted on 16 additional subjects by comparing an automatic template-based segmentation and manual segmentation, yielding a median Dice coefficient of 0.89. The registration pipeline is rapid (~15 min), automatic after one C2/C3 landmark manual identification, and robust, thereby reducing subjective variability and bias associated with manual segmentation. The template can notably be used for measurements of spinal cord cross-sectional area, voxel-based morphometry, identification of anatomical features (e.g., vertebral levels, white and gray matter location) and unbiased extraction of multi-parametric data.

Metallic nanoparticles enhanced the spontaneous emission of semiconductor nanocrystals embedded in nanoimprinted photonic crystals.

We report on a method to enhance the light-emission efficiency of printable thin films of a polymer doped with luminescent (CdSe)ZnS nanocrystals via metallic nanoparticles and nanoimprinted photonic crystals. We experimentally show a strong fluorescence enhancement of nanocrystals by coupling exciton-plasmon with the localized surface plasmon of metallic nanoparticles. The emitted light is efficiently diffracted by photonic crystals structures directly imprinted in the nanocomposite polymer. By combining the field susceptibility technique with optical Bloch equations, we examine the interaction of the quantum and plasmonic entities at small distances.

Nanodielectric mapping of a model polystyrene-poly(vinyl acetate) blend by electrostatic force microscopy.

We present a simple method to quantitatively image the dielectric permittivity of soft materials at nanoscale using electrostatic force microscopy (EFM) by means of the double pass method. The EFM experiments are based on the measurement of the frequency shifts of the oscillating tip biased at two different voltages. A numerical treatment based on the equivalent charge method allows extracting the values of the dielectric permittivity at each image point. This method can be applied with no restrictions of film thickness and tip radius. This method has been applied to image the morphology and the nanodielectric properties of a model polymer blend of polystyrene and poly(vinyl acetate).

Nanoscale dielectric properties of insulating thin films: from single point measurements to quantitative images.

Dielectric relaxation (DR) has shown to be a very useful technique to study dielectric materials like polymers and other glass formers, giving valuable information about the molecular dynamics of the system at different length and time scales. However, the standard DR techniques have a fundamental limitation: they have no spatial resolution. This is of course not a problem when homogeneous and non-structured systems are analyzed but it becomes an important limitation for studying the local properties of heterogeneous and/or nano-structured materials. To overcome this constrain we have developed a novel approach that allows quantitatively measuring the local dielectric permittivity of thin films at the nanoscale by means of Electrostatic Force Microscopy. The proposed experimental method is based on the detection of the local electric force gradient at different values of the tip-sample distance. The value of the dielectric permittivity is then calculated by fitting the experimental points using the Equivalent Charge Method. Even more interesting, we show how this approach can be extended in order to obtain quantitative dielectric images of insulating thin films with an excellent lateral resolution.

Ultrasonic properties of water/sorbitol solutions.

Ultrasonic longitudinal velocity and attenuation were measured for aqueous solutions of sorbitol at approximately 5 MHz. For pure sorbitol, the ultrasonic velocity reached 3200 m s(-1), consequently leading to a high acoustical impedance (around 5 x 10(6) Rayleigh) and good matching between the ultrasonic transducers and material samples.

Characterization of the polarization sensitivity anisotropy of a near-field probe using phase measurements.

Amplitude and phase measurements of the near-field generated by isolated subwavelength apertures in a gold film are presented. The near-field distribution of such a structure is complex and the measured signal strongly depends on the electric field components effectively detected by the experimental setup. By comparing this signal with 3D vectorial calculations we are able to determine which electric field components are effectively measured. The sensitivity of the phase distribution is key to this measurement. The proposed characterization technique should prove extremely useful to calibrate a Scanning near-field optical microscopy (SNOM) beforehand in order to retrieve quantitative information on the polarization of the field distribution under study.

Near-field-induced tunability of surface plasmon polaritons in composite metallic nanostructures.

We numerically study near-field-induced coupling effects in metal nanowire-based composite nanostructures. Our multi-layer system is composed of individual gold nanowires supporting localized particle plasmons at optical wavelengths, and a spatially separated homogeneous silver slab supporting delocalized surface plasmons. We show that the localized plasmon modes of the composite structure, forming so-called magnetic atoms, can be controlled over a large spectral range by changing the thickness of the nearby metal slab. The optical response of single-wire and array-based metallic structures are compared. Spectral shifts due to wire-mirror interaction as well as the coupling between localized and delocalized surface plasmon modes in a magnetic photonic crystal are demonstrated. The presented effects are important for the optimization of metal-based nanodevices and may lead to the realization of metamaterials with novel plasmonic functionalities.

Image processing for resonance frequency mapping in atomic force modulation microscopy.

It has been demonstrated that the resonance frequency of the cantilever in atomic force modulation microscopy can be used to study local mechanical properties. We developed a numerical method to achieve mapping of the resonance frequency without significant modification of the device. By making the assumption that the resonance spectrum can be approximated by a Lorentzian curve, we established analytical expressions of the resonance frequency and the width of the curve (damping) depending on the real and imaginary parts of the vibration at a single frequency. Then, resonance frequency and damping images were produced from the recording of both the real and imaginary part images of the complex amplitude. The results on a standard high-impact polystyrene sample are shown.

Elastic properties of composites: periodical homogenisation technique and experimental comparison using acoustic microscopy and resonant ultrasonic spectroscopy.

The macroscopic elastic properties of two composites (Duralumin/air and Duralumin/tungsten carbide (WC)) have been calculated using periodical homogenisation methods and the elastic properties of each phase (measured by high frequency acoustic microscopy). In order to check the validity of such an approach, acoustical resonant spectroscopy has also been applied. Thanks to the comparison between the resonant frequencies predicted and measured, two major conclusions have been obtained: the homogenisation method is very accurate for the composite Duralumin/air, but not for the Duralumin/WC sample: the experimental results are not in very good agreement with the simulation. This result can be then explained by the major role of interfacial state between Duralumin and tungsten carbide.

Complete elucidation of a minimal class I MHC natural killer cell receptor haplotype.

The BALB/c inbred mouse is widely used in models of infectious disease, transplantation, and cancer. The differences in the immune responses of BALB/c compared to C57BL/6 mice are especially valuable for the identification of immune regulation genes. One striking immune variance between these mice is in the function of natural killer (NK) cells, and there is strong evidence implicating differential expression of Ly49 genes. In this study, the complete BALB/c Ly49 gene cluster has been sequenced and found to contain six functional genes and two pseudogenes. Compared to C57BL/6 mice, there is a 200 kb region absent in the BALB/c cluster including a complete lack of Ly49h-related genes, which explains the increased susceptibility of BALB/c to cytomegalovirus infection. In addition, there is no BALB/c Ly49d allele, explaining the inability of BALB/c NK cells to kill certain tumor cells. The Ly49 region has now been sequenced in three different inbred mouse strains, and comparisons indicate that the evolution of each haplotype is not straightforward and has involved large-scale deletions/insertions, gene recombination, and unequal crossing over between divergent haplotypes. This study confirms that relatively small murine class I MHC receptor haplotypes exist, analogous to observations made of human killer cell Ig-like receptor gene haplotypes.

Effect of two candidate genes on the Salmonella carrier state in fowl.

Selection for increased resistance to Salmonella carrier-state (defined as the persistency of the bacteria 4 wk after inoculation) could reduce the risk for the consumer of food toxi-infections. The effects of two genomic regions on chromosomes 7 and 17 harboring two genes, NRAMP1 (SLC11A1) and TLR4, known to be involved in the level of chicken infection 3 d after inoculation by Salmonella were thus tested on a total of 331 hens orally inoculated at the peak of lay with 10(9) bacteria. The animals and their parents were genotyped for a total of 10 microsatellite markers mapped on chromosomes 7 and 17. Using maximum likelihood analysis and interval mapping, it was found that the SLC11A1 region was significantly involved in the control of the probability of spleen contamination 4 wk after inoculation. Single nucleotide polymorphisms (SNP) within the SLC11A1 and TLR4 gene were tested on those animals as well as on a second batch of 279 hens whose resistance was assessed in the same conditions. As the former was significantly associated with the risk of spleen contamination and the number of contaminated organs, SLC11A1 appears to be involved in the control of resistance to Salmonella carrier state. The involvement of the TLR4 gene was also highly suspected as a significant association between SNP within the gene, and the number of contaminated organs was detected.

Cloning and characterization of the murine toll-like receptor 5 (Tlr5) gene: sequence and mRNA expression studies in Salmonella-susceptible MOLF/Ei mice.

Toll-like receptors (TLRs) are a group of evolutionarily conserved pattern recognition receptors involved in the activation of the immune system in response to various pathogens. In this paper, we describe the cloning and characterization of the mouse homologue of human TLR5. Mouse Tlr5 encodes a 859-amino-acid protein that contains an N-terminal signal sequence, a leucine-rich repeat extracellular domain, a short transmembrane domain typical of type I transmembrane proteins, and a Toll/interleukin-1R signaling domain characteristic of all TLR proteins. The mouse Tlr5 protein shows 81% homology to human TLR5 and approximately 40% similarity to other TLR family members. Northern blot analysis reveals that Tlr5 is expressed predominantly in liver and lung with low-level expression in most other tissues examined. We have mapped Tlr5 to distal chromosome 1 using the (C57BL/6J x Mus spretus) x C57BL/6J Jackson BSB panel as well as a (C57BL/6J x MOLF/Ei)F(2) panel with the following position: D1Mit112-8.0 cM-Tlr5-9.6 cM-D1Mit17. The presence of a quantitative trait locus for susceptibility to Salmonella typhimurium on distal chromosome 1 prompted the examination of Tlr5 in susceptible MOLF/Ei mice. Polymorphic sequence variants in Tlr5 allowed us to identify a unique 4-allele haplotype in MOLF/Ei. Furthermore, using both Northern blot analysis and reverse transcription-polymerase chain reaction, we have shown a reduced expression of Tlr5 during infection of MOLF/Ei mice with Salmonella. The assignment of Tlr5 to a chromosomal region known to harbor a Salmonella-susceptibility locus together with decreased expression of Tlr5 mRNA in liver of susceptible MOLF/Ei mice suggests the possibility that, as with other members of this family, Tlr5 may play a role in host response to bacterial gram-negative infections.

Endotoxin-tolerant mice have mutations in Toll-like receptor 4 (Tlr4)

Bacterial lipopolysaccharide (LPS) provokes a vigorous, generalized proinflammatory state in the infected host. Genetic regulation of this response has been localized to the Lps locus on mouse chromosome 4, through study of the C3H/HeJ and C57BL/10ScCr inbred strains. Both C3H/HeJ and C57BL/10ScCr mice are homozygous for a mutant Lps allele (Lpsd/d) that confers hyporesponsiveness to LPS challenge, and therefore exhibit natural tolerance to its lethal effects. Genetic and physical mapping of 1,345 backcross progeny segregating this mutant phenotype confined Lps to a 0.9-cM interval spanning 1.7 Mb. Three transcription units were identified within the candidate interval, including Toll-like receptor 4 (Tlr4), part of a protein family with members that have been implicated in LPS-induced cell signaling. C3H/HeJ mice have a point mutation within the coding region of the Tlr4 gene, resulting in a nonconservative substitution of a highly conserved proline by histidine at codon 712, whereas C57BL/ 10ScCr mice exhibit a deletion of Tlr4. Identification of distinct mutations involving the same gene at the Lps locus in two different hyporesponsive inbred mouse strains strongly supports the hypothesis that altered Tlr4 function is responsible for endotoxin tolerance.

Quantum efficiency of a metal-oxide-semiconductor capacitor with a semitransparent chromium electrode for an ultraviolet light detector.

We have fabricated and tested an UV radiation detector by using a metal-oxide-semiconductor capacitor in the deep depletion mode with a semitransparent chromium electrode deposited on an oxidized silicon wafer. The quantum efficiency of the device is sensitive to the metal-layer thickness, since it absorbs part of the beam energy. Efficiency values of the order of 25-40% are obtained between 2 and 6 eV with a 10-nm chromium electrode. A model of the device efficiency is given, including effects of optical multiple reflection, electron-hole creation, and collecting yield.

Determination of optical constants of thin film from reflectance spectra.

We present a method of determining optical constants n and k of a thin film using only the reflectance R(omega) curve (normal incidence reflectance spectroscopy). The method is based on the simultaneous use of Fresnel laws and dispersion relations between n and k of the film, via an iterative process. To illustrate the method, optical constants in the VUV of a film grown on InP were determined. A second example with a SnO(2) film shows how the method can reduce the effect of experimental errors when two sets of spectroscopic data are available.

[Accidental poisoning with liquid or solid caustic soda for domestic use: circumstances and cost (author's transl)]. / Bilan des circonstances et des coûts unitaire et global des intoxications accidentelles par déboucheurs d'éviers (Soude caustique liquide et solide).

524 records of patients seen in French anti-poison centers in 1978-1979 for accidental poisoning with caustic soda were reviewed. The accidents were usually due to liquid agents. The digestive lesions were particularly serious in children who were affected in more than two-thirds of the cases. The accident usually occurred while the caustic agent was being used.