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1.
J Phys Condens Matter ; 25(46): 466001, 2013 Nov 20.
Article in English | MEDLINE | ID: mdl-24134877

ABSTRACT

Langevin simulations at finite temperature of two-dimensional magnetic nanodots were performed using the Landau-Lifshitz equation with exchange and dipolar interactions. In a wide range of temperatures, the dynamics of square samples with one central vortex was studied, focusing on the out-of-plane magnetic component at the vortex-core. This vortex-core undergoes polarization sign reversals in a thermally activated process. In the intervals between polarization flips, the out-of-plane spin components at the vortex-core show oscillations with identifiable frequencies connected with certain eigenfrequencies of the system associated with polarity active modes. The vortex-core positions were also monitored.

2.
Biopolymers ; 73(3): 293-300, 2004 Feb 15.
Article in English | MEDLINE | ID: mdl-14755565

ABSTRACT

A double stranded DNA molecule when pulled with a force acting on one end of the molecule can become either partially or completely unzipped depending on the magnitude of the force F. For a random DNA sequence, the number M of unzipped base pairs goes as M approximately (F - Fc)(-2) and diverges at the critical force Fc with an exponent chi = 2. We find that when excluded volume effect is taken into account for the unzipped part of the DNA, the exponent chi = 2 is not changed but the critical force Fc is changed. The force versus temperature phase diagram depends on only two parameters in the model, the persistence length and the denaturation temperature. Furthermore a scaling form of the phase diagram can be found. This scaling form is parameter independent and depends only on the spatial dimension. It applies to all DNA molecules and should provide a useful framework for comparison with experiments.


Subject(s)
DNA/chemistry , Biophysical Phenomena , Biophysics , Chemical Phenomena , Chemistry, Physical , Models, Chemical , Nucleic Acid Conformation , Nucleic Acid Denaturation , Thermodynamics
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