Electronic Structure of de Novo Peptide ACC-Hex from First Principles.

Proteins are promising components for bioelectronic devices due in part to their biocompatibility, flexibility, and chemical diversity, which enable tuning of material properties. Indeed, an increasingly broad range of conductive protein supramolecular materials have been reported. However, due to their structural and environmental complexity, the electronic structure, and hence conductivity, of protein assemblies is not well-understood. Here we perform an all-atom simulation of the physical and electronic structure of a recently synthesized self-assembled peptide antiparallel coiled-coil hexamer, ACC-Hex. Using classical molecular dynamics and first-principles density functional theory, we examine the interactions of each peptide, containing phenylalanine residues along a hydrophobic core, to form a hexamer structure. We find that while frontier electronic orbitals are composed of phenylalanine, the peptide backbone and remaining residues, including those influenced by solvent, also contribute to the electronic density. Additionally, by studying dimers extracted from the hexamer, we show that structural distortions due to atomic fluctuations significantly impact the electronic structure of the peptide bundle. These results indicate that it is necessary to consider the full atomistic picture when using the electronic structure of supramolecular protein complexes to predict electronic properties.

Exciton-Phonon Interactions in Monolayer Germanium Selenide from First Principles.

We investigate from first principles exciton-phonon interactions in monolayer germanium selenide, a direct gap two-dimensional semiconductor. By combining the Bethe-Salpeter approach and the special displacement method, we explore the phonon-induced renormalization of the exciton wave functions, excitation energies, and oscillator strengths. We determine a renormalization of the optical gap of 0.1 eV at room temperature, which results from the coupling of the exciton with both acoustic and optical phonons, with the strongest coupling to optical phonons at ∼100 cm-1. We also find that the exciton-phonon interaction is similar between monolayer and bulk GeSe. Overall, we demonstrate that the combination of many-body perturbation theory and special displacements offers a new route to investigate electron-phonon couplings in excitonic spectra, the resulting band gap renormalization, and the nature of phonons that couple to the exciton.

Assessing the Role of Intermolecular Interactions in a Perylene-Based Nanowire Using First-Principles Many-Body Perturbation Theory.

We present a first-principles many-body perturbation theory study of the role of intermolecular coupling in the optoelectronic properties of a one-dimensional (1D) π-stacked nanowire composed of perylene-3,4,9,10-tetracarboxylic diimide molecules on a DNA-like backbone. We determine that strong intermolecular electronic coupling results in large bandwidths and low carrier effective masses, suggesting a high-electron mobility material. Additionally, by including the role of finite-temperature phonons on optical absorption via a newly presented approach, we predict that the optical absorption spectrum  is significantly altered from that at zero temperature due to allowed indirect transitions, while the exciton delocalization and binding energy, a measure of intermolecular electronic interactions, remains constant. Overall, our studies indicate that strong intermolecular coupling can dominate the optoelectronic properties of π-conjugated 1D systems even at room temperature.