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1.
PeerJ ; 12: e17370, 2024.
Article in English | MEDLINE | ID: mdl-38737737

ABSTRACT

Cysteine-rich receptor-like kinases (CRKs) play many important roles during plant development, including defense responses under both biotic and abiotic stress, reactive oxygen species (ROS) homeostasis, callose deposition and programmed cell death (PCD). However, there are few studies on the involvement of the CRK family in male sterility due to heat stress in wheat (Triticum aestivum L.). In this study, a genome-wide characterization of the CRK family was performed to investigate the structural and functional attributes of the wheat CRKs in anther sterility caused by heat stress. A total of 95 CRK genes were unevenly distributed on 18 chromosomes, with the most genes distributed on chromosome 2B. Paralogous homologous genes with Ka/Ks ratios less than 1 may have undergone strong purifying selection during evolution and are more functionally conserved. The collinearity analysis results of CRK genes showed that wheat and Arabidopsis (A. thaliana), foxtail millet, Brachypodium distachyon (B. distachyon), and rice have three, 12, 15, and 11 pairs of orthologous genes, respectively. In addition, the results of the network interactions of genes and miRNAs showed that five miRNAs were in the hub of the interactions map, namely tae-miR9657b-5p, tae-miR9780, tae-miR9676-5p, tae-miR164, and tae-miR531. Furthermore, qRT-PCR validation of the six TaCRK genes showed that they play key roles in the development of the mononuclear stage anthers, as all six genes were expressed at highly significant levels in heat-stressed male sterile mononuclear stage anthers compared to normal anthers. We hypothesized that the TaCRK gene is significant in the process of high-temperature-induced sterility in wheat based on the combination of anther phenotypes, paraffin sections, and qRT-PCR data. These results improve our understanding of their relationship.


Subject(s)
Gene Expression Regulation, Plant , Plant Infertility , Triticum , Triticum/genetics , Plant Infertility/genetics , Plant Proteins/genetics , Plant Proteins/metabolism , Genome, Plant/genetics , Hot Temperature/adverse effects , Multigene Family , Chromosomes, Plant/genetics , Heat-Shock Response/genetics , Gene Expression Profiling
2.
Plant Sci ; 344: 112100, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38679393

ABSTRACT

Jatropha curcas (J. curcas) is a perennial oil-seed plant with vigorous vegetative growth but relatively poor reproductive growth and low seed yield. Gibberellins (GAs) promotes flowering in most annual plants but inhibits flowering in many woody plants, including J. curcas. However, the underlying mechanisms of GA inhibits flowering in perennial woody plants remain unclear. Here, we found that overexpression of the GA biosynthesis gene JcGA20ox1 inhibits flowering in J. curcas and in J. curcas × J. integerrima hybrids. Consistent with this finding, overexpression of the GA catabolic gene JcGA2ox6 promotes flowering in J. curcas. qRTPCR revealed that inhibits floral transition by overexpressing JcGA20ox1 resulted from a decrease in the expression of JcFT and other flowering-related genes, which was restored by overexpressing JcFT in J. curcas. Overexpression of JcGA20ox1 or JcGA2ox6 reduced seed yield, but overexpression of JcFT significantly increased seed yield. Furthermore, hybridization experiments showed that the reduction in seed yield caused by overexpression of JcGA20ox1 or JcGA2ox6 was partially restored by the overexpression of JcFT. In addition, JcGA20ox1, JcGA2ox6 and JcFT were also found to be involved in the regulation of seed oil content and endosperm development. In conclusion, our study revealed that the inhibitory effect of GA on flowering is mediated through JcFT and demonstrated the effects of JcGA20ox1, JcGA2ox6 and JcFT on agronomic traits in J. curcas. This study also indicates the potential value of GA metabolism genes and JcFT in the breeding of new varieties of woody oil-seed plants.


Subject(s)
Flowers , Gibberellins , Jatropha , Plant Proteins , Gibberellins/metabolism , Flowers/genetics , Flowers/growth & development , Flowers/metabolism , Jatropha/genetics , Jatropha/metabolism , Jatropha/growth & development , Jatropha/physiology , Plant Proteins/genetics , Plant Proteins/metabolism , Gene Expression Regulation, Plant , Plants, Genetically Modified/genetics , Seeds/genetics , Seeds/growth & development , Seeds/metabolism
3.
Environ Manage ; 73(3): 546-562, 2024 Mar.
Article in English | MEDLINE | ID: mdl-37934303

ABSTRACT

Grassland property rights privatization has alleviated the problem of 'the tragedy of the commons' but led to an unintended ecological consequence-traditional nomadic modes declination. However, with the grassland rental market formation in countries with property rights privatization, grassland rental has reshaped the pattern of grassland allocation and provided opportunities for herders to optimize their grazing modes. Based on the survey data of herders in northern China, we theoretically analyze and empirically test grassland rental's impact on herders' rotational grazing behavior under the household responsibility system. The results show that grassland rental promotes herders' rotational grazing, and the probability of individual rotational grazing is increased by 58.27%. By increasing the operated grazing grassland area and the number of grassland plots fenced, grassland rental promotes herders' grassland endowment match with the large-scale livestock activity space and the number of grazing blocks required for rotational grazing, reduces the input cost and operation difficulty required for rotational grazing, and increase herders rotational grazing probability. Grassland rental's impact on herder's rotational grazing is heterogeneous, showing the dependence of the number of plots fenced and the scale of grazing grassland. It has a higher promotion effect on herders with more plots fenced; It cannot promote the generation of herders' rotational grazing behavior when the rented grassland area fails to make the grassland operation scale reach the minimum threshold of rotational grazing. The study emphasizes the importance of developing a grassland rental market to promote the optimization of grazing modes in grassland privatization countries.


Subject(s)
Grassland , Livestock , Animals , China
4.
Plant Sci ; 335: 111821, 2023 Oct.
Article in English | MEDLINE | ID: mdl-37558055

ABSTRACT

The maintain of iron (Fe) homeostasis is essential for plant survival. In tomato, few transcription factors have been identified as regulators of Fe homeostasis, among which SlbHLH068 induced by iron deficiency, plays an important role. However, the upstream regulator(s) responsible for activating the expression of SlbHLH068 remain(s) unknown. In this study, the bHLH (basic helix-loop-helix) transcription factor SlbHLH152 was identified as an upstream regulator of SlbHLH068 using yeast one-hybrid screening. Deletion of SlbHLH152 led to a significant decline in Fe concentration, which was accompanied by reduced expression of Fe-deficiency-responsive genes. In contrast, SlbHLH152 overexpression plants displayed tolerance to iron deficiency, increased Fe accumulation, and elevated expression of Fe-deficiency-responsive genes. Further analysis indicated that SlbHLH152 directly activates the transcription of SlbHLH068. Taken together, our results suggest that SlbHLH152 may be involved in the regulation of iron homeostasis by directly activating the transcription of SlbHLH068 in tomato.


Subject(s)
Arabidopsis Proteins , Iron Deficiencies , Solanum lycopersicum , Basic Helix-Loop-Helix Transcription Factors/genetics , Basic Helix-Loop-Helix Transcription Factors/metabolism , Solanum lycopersicum/genetics , Iron/metabolism , Homeostasis , Gene Expression Regulation, Plant , Arabidopsis Proteins/metabolism , Plants, Genetically Modified/metabolism
5.
Environ Manage ; 72(6): 1259-1276, 2023 Dec.
Article in English | MEDLINE | ID: mdl-37402887

ABSTRACT

Under the framework of payment for transboundary watershed ecosystem services (ESs), identifying midstream and downstream residents' preference and willingness to pay (WTP) for ESs provided by the upstream is crucial for sustainable watershed management. The residents' preferences and WTP are not evenly distributed within the watershed. This study uses a choice experiment assessing the spatial impact of physical distance (including residents' watershed location and distance to waterbody) and psychological distance on residents' preference and WTP for the Wei River Basin ESs. The results showed that midstream and downstream residents' preference and WTP for the ecological attributes have a significant distance-decay effect, either the physical distance to the upstream exit or physical and psychological distance to the waterbody. However, compared with the residents in the midstream, the residents downstream have a stronger preference and WTP for upstream ecological governance. Besides, the distance-decay effect differs between urban and rural residents. There is a psychological distance-decay effect in rural residents' preference for water quality and a physical distance-decay effect in their preference for water quantity, entertainment area, and cost; there is a physical distance decay effect in urban residents' preference for entertainment areas. The above differences lead to heterogeneity in WTP and total economic value (TEV) for ESs. When calculating the TEV of the transboundary watershed ES and charging the public, policymakers should consider the location of the residents, the physical and psychological distance to the water body, and the difference between urban and rural areas.

6.
Tree Physiol ; 42(1): 189-201, 2022 01 05.
Article in English | MEDLINE | ID: mdl-34505154

ABSTRACT

FLOWERING LOCUS T (FT) promotes flowering by integrating six genetic pathways. In Arabidopsis, the FT protein is transported from leaves to shoot apices and induces flowering. However, contradictory conclusions about floral induction via graft-transmitted FT in trees were reported in previous studies. We obtained extremely early-flowering transgenic woody Jatropha curcas L. by overexpression of J. curcas FT using Arabidopsis thaliana SUCROSE TRANSPORTER 2 (SUC2) promoter (SUC2:JcFT) and non-flowering transgenic J. curcas by RNA interference (RNAi), which were used to investigate the function of graft-transmitted JcFT in floral induction in woody perennials. Scions from five wild-type species of the Jatropha genus and from JcFT-RNAi transgenic J. curcas were grafted onto SUC2:JcFT rootstocks. Most grafted plants produced flowers in 1-2 months, and the flowering percentage and frequency of various grafted plants decreased with increasing scion length. Consistently, FT protein abundance in scions also decreased with increasing distance from graft junctions to the buds. These findings suggest that FT proteins can be transmitted by grafting and can induce the floral transition in woody perennials, and the efficiency of graft-transmitted JcFT for floral induction depends on the scion length, which may help explain previous seemingly contradictory observations regarding floral induction via graft-transmitted FT in trees.


Subject(s)
Arabidopsis Proteins , Arabidopsis , Jatropha , Arabidopsis/genetics , Arabidopsis/metabolism , Arabidopsis Proteins/genetics , Flowers/genetics , Flowers/metabolism , Gene Expression Regulation, Plant , Jatropha/genetics , Jatropha/metabolism , Plants, Genetically Modified/genetics , Plants, Genetically Modified/metabolism
7.
Front Plant Sci ; 12: 727966, 2021.
Article in English | MEDLINE | ID: mdl-34759937

ABSTRACT

Global warming will have a negative effect on agricultural production as high temperature (HT) stress can seriously threaten plant growth and reproduction. Male sterility caused by HT may be exploited by the creation of a male-sterile line, which has great potential for application in crop heterosis. Therefore, it is important to understand the molecular mechanisms of anther abortion induced by HT in wheat, which remain unclear at present. In this study, we performed phenotype improve language in the abstract and comparative transcriptome analysis of the male sterile anthers induced by HT in wheat. Compared with Normal anthers, the cytological analysis indicated that HT-induced male sterile anthers were smaller and had no starch accumulation in pollen grains, which is consistent with the results observed by scanning electron microscopy (SEM). The 9601 differentially expressed genes (DEGs) identified by transcriptome sequencing compared with the Normal anthers were noticeably involved in the following pathways: starch and sucrose metabolism, phosphatidylinositol (PI) signaling system, peroxidase activity and response to oxidative stress, and heme binding. In addition, TUNEL assays were performed and the results further confirmed the excessive accumulation of reactive oxygen species (ROS) in sterile anthers. Moreover, a total of 38 hub genes were obtained from the protein-protein interaction network analysis of these pathways, including genes, for example, heat shock protein 90 (HSP90), thioredoxin-like protein 1, peroxidase (POD), calreticulin, UDP glucose pyrophosphorylase (UGPase), sucrose synthase, phosphatidylinositol-4-phosphate 5-Kinase (PIP5K), cytochrome c, and Cystathionine beta-synthase X6-like (CBSX6-like). These findings provide insights for predicting the functions of the candidate genes, and the comprehensive analysis of our results is helpful for studying the abortive interaction mechanism induced by HT in wheat.

8.
J Environ Manage ; 296: 113233, 2021 Oct 15.
Article in English | MEDLINE | ID: mdl-34252856

ABSTRACT

Payments for watershed ecosystem services are the most important forms of global water environmental protection. Transboundary basin ecological compensation policies in China are mainly based on the central government's appropriation to local governments or transfer payments between local governments. However, watershed ecosystem services face many problems such as the lack of interprovincial horizontal compensation policies and insufficient public participation. Most of China's rivers are distributed in vast rural areas, and the livelihoods of farmers living in these areas are highly dependent on the water environment. Since a watershed usually spans multiple administrative regions, the inconsistency between the natural and administrative boundaries of the river affects the completeness of the ecosystem services' information exchange between the service providers and payers. To promote interprovincial government water management cooperation and spark the farmers' enthusiasm for participating in the payments for watershed ecosystem services, this study examines the mechanism by which social interactions can affect farmers' willingness to pay (WTP) by mitigating the information bias. The results show that information bias plays a mediating role in the effect of social interactions on WTP. Additionally, the cadres/associations' and village-level interactions can effectively reduce the information bias of farmers, thereby increasing their WTP for transboundary basin ecosystem services. Moreover, the intensity of the psychological ownership of the watershed and government credibility have a significant moderating effect on the above-mentioned mechanisms. This study suggests that it is necessary to broaden the source channels of farmers' information on upstream ecological governance, improve the completeness of farmers' information, and curb the negative impact of information bias on WTP. Simultaneously, it is necessary to improve the government credibility and cultivate the farmers' sense of belonging and responsibility toward the watershed.


Subject(s)
Ecosystem , Social Interaction , China , Conservation of Natural Resources , Farmers , Humans , Rivers
9.
PeerJ ; 9: e11371, 2021.
Article in English | MEDLINE | ID: mdl-33987032

ABSTRACT

The sugar transporter protein (STP) plays a crucial role in regulating plant growth and stress tolerance. We performed genome-wide identification and expression analysis of the STP gene family to investigate the STPSs' potential roles in the growth of wheat seedlings under stress. Here, a total of 81 TaSTP genes containing the Sugar_tr conserved motif were identified within the wheat genome. Bioinformatic studies including phylogenetic tree, chromosome position, and tandem repeat were performed to analyze the identified genes. The 81 TaSTP genes can be classified into five main groups according to their structural and phylogenetic features, with several subgroups, which were located separately on chromosomes A, B, and D. Moreover, six gene clusters were formed with more than three genes each. The results of three comparative syntenic maps of wheat associated with three representative species suggested that STP genes have strong relationships in monocots. qRT-PCR analysis confirmed that most TaSTP genes displayed different expression profiles after seedlings were subjected to six days of different stress (10% PEG6000, 150 mM NaCl, and their combination, respectively), suggesting that these genes may be involved in regulating plant growth and stress tolerance. In conclusion, 81 TaSTP genes were identified and their expressions changed under stress, indicating TaSTP's potential roles in wheat growth monosaccharide distribution is regulated.

10.
Genes Genomics ; 43(8): 885-896, 2021 08.
Article in English | MEDLINE | ID: mdl-33884569

ABSTRACT

BACKGROUND: Paeonia ostii seeds were identified as novel sources of edible plant oil with a high proportion of α-linolenic acid, a type of n-3 fatty acid with many health benefits. Due to the unreliability of seed oil content and quality, it is necessary to discover the mechanism underlying lipid biosynthesis in Paeonia ostii seeds. OBJECTIVES: This study aimed to identify the key genes involved in lipid biosynthesis in Paeonia ostii seeds by analyzing the relationship among the seed characteristics and the expression patterns of lipid genes in Paeonia ostii during seed development. METHODS: Preliminary research on Paeonia ostii seed development was carried out from 10 days after pollination until maturity, focusing on phenology, oil content and lipid profiles. In addition, we investigated the spatiotemporal expression of 36 lipid biosynthetic genes in Paeonia ostii by using quantitative real-time PCR. RESULTS: The results suggested that the development of Paeonia ostii seeds from pollination to maturity could be divided into three periods. The 36 lipid genes showed various spatiotemporal expression patterns and five gene groups with distinct temporal patterns during seed development were identified by clustering analysis of expression data. Furthermore, the relationships between gene expression and lipid/fatty acid accumulation and some candidate key lipid genes were discussed. CONCLUSIONS: This study provided the global patterns of fatty acid and lipid biosynthesis-related gene expression, which are critical to understanding the molecular basis of lipid biosynthesis and identifying the lipid accumulation rate-limiting genes during seed development.


Subject(s)
Fatty Acids/genetics , Lipids/biosynthesis , Paeonia/genetics , Seeds/genetics , Gene Expression Regulation, Plant/genetics , Lipids/genetics , Lipogenesis/genetics , Paeonia/growth & development , Seeds/growth & development , Transcriptome/genetics
11.
Environ Sci Pollut Res Int ; 28(29): 38535-38551, 2021 Aug.
Article in English | MEDLINE | ID: mdl-33735411

ABSTRACT

Agricultural green production (AGP) and efficiency improvement of smallholders' management are the objective requirements for the development of China's modernized agriculture and the understanding of the rural vitalization strategy. Based on field survey data of 582 rice farmers in Shaanxi Province, this study used the Logit model to analyze the determinants of smallholders' adoption of agricultural green production technology (AGPT) and used the propensity score matching (PSM) method to measure the effect of AGPT on the technical efficiency (TE) of rice production and the heterogeneity of this influence among smallholders. Results showed that the AGPT adoption rate and the mean of rice production TE were 15.1% and 0.312, both had a lot of room for improvement. Furthermore, it was found that household's characteristics, family characteristics, agricultural management characteristics, social characteristics, and cognitive characteristics significantly affect smallholders' AGPT adoption, and the AGPT adoption significantly increased the TE of rice production by 18.8 to 24.5%. Besides, farmers with older age, less education, more specialized planting, more fragmented land, and more off-farm employment adopting AGPT could significantly improve the TE; the increase proportion was 29.8%, 29.5%, 21.3%, 27.2%, and 16.8%. The study also showed that the AGPT could not significantly increase the rice output value of smallholders. In addition, considering the endogeneity problem caused by sample selection bias, the study re-estimated using the endogenous transformation regression (ESR) model which showed that the promotion of AGPT to TE was still robust. The study puts forward policy recommendations on how to further promote the adoption of AGPT and improve the TE by farmers.


Subject(s)
Agriculture , Farmers , Aged , China , Farms , Humans , Technology
12.
Plant Cell Physiol ; 61(5): 978-987, 2020 May 01.
Article in English | MEDLINE | ID: mdl-32154879

ABSTRACT

Eukaryotic chromatin is tightly packed into hierarchical structures, allowing appropriate gene transcription in response to environmental and developmental cues. Here, we provide a chromosome-scale de novo genome assembly of sesame with a total length of 292.3 Mb and a scaffold N50 of 20.5 Mb, containing estimated 28,406 coding genes using Pacific Biosciences long reads combined with a genome-wide chromosome conformation capture (Hi-C) approach. Based on this high-quality reference genome, we detected changes in chromatin architectures between normal growth and dark-treated sesame seedlings. Gene expression level was significantly higher in 'A' compartment and topologically associated domain (TAD) boundary regions than in 'B' compartment and TAD interior regions, which is coincident with the enrichment of H4K3me3 modification in these regions. Moreover, differentially expressed genes (DEGs) induced by dark treated were enriched in the changed TAD-related regions and genomic differential contact regions. Gene Ontology (GO) enrichment analysis of DEGs showed that genes related to 'response to stress' and 'photosynthesis' functional categories were enriched, which corresponds to dark treatment. These results suggested that chromatin organization is associated with gene transcription in response to dark treatment in sesame. Our results will facilitate the understanding of regulatory mechanisms in response to environmental cues in plants.


Subject(s)
Chromatin/metabolism , Darkness , Genome, Plant , Sesamum/genetics , Gene Expression Regulation, Plant , Molecular Sequence Annotation , Transcription, Genetic
13.
Mol Biol Rep ; 46(6): 6003-6011, 2019 Dec.
Article in English | MEDLINE | ID: mdl-31446531

ABSTRACT

Paeonia ostii seeds have recently been identified as a new source of α-linolenic acid in China. Studying the gene expression patterns of unsaturated fatty acid-related genes would be helpful for understanding the mechanism of α-linolenic acid accumulation. Quantitative real-time polymerase chain reaction (qRT-PCR) is a useful method for reliably evaluating gene expression, and it is necessary to select reliable reference genes for data normalization in qRT-PCR analysis. In this study, we evaluated the expression stability of 12 candidate reference genes using four mathematical algorithms (∆Ct, BestKeeper, NormFinder, and geNorm). The web-based tool RefFinder was used to integrate the results and to provide a comprehensive ranking order. The expression stability ranking orders of reference genes were different caculated by these four algorithms, and the ranking order analyzed by the RefFinder was UBQ > Tip41 > UCE > EF-1α > α-TUB > PP2A > ACT > GAPDH > SAM > CYP > ß-TUB > 18S at the different seed development stages, and UBQ > Tip41 > EF-1α > α-TUB > PP2A > UCE > GAPDH > SAM > ACT > CYP > 18S > ß-TUB in P. ostii tissues. UBQ and Tip41 are the two most stable whereas 18S and ß-TUB are the two least stable reference genes for gene expression in various tissues and seeds at different developmental stages in P. ostii.


Subject(s)
Gene Expression Profiling/standards , Paeonia/genetics , Reference Standards , Gene Expression/genetics , Gene Expression Profiling/methods , Gene Expression Regulation, Plant/genetics , Genes, Plant/genetics , Real-Time Polymerase Chain Reaction/methods , Real-Time Polymerase Chain Reaction/standards
14.
Sci Rep ; 7: 43090, 2017 02 22.
Article in English | MEDLINE | ID: mdl-28225036

ABSTRACT

Recent research revealed that TERMINAL FLOWER 1 (TFL1) homologues are involved in the critical developmental process of floral initiation in several plant species. In this study, the functions of three putative TFL1 homologues (JcTFL1a, JcTFL1b and JcTFL1c) in the biofuel plant Jatropha curcas were analysed using the transgenic approach. JcTFL1b and JcTFL1c, but not JcTFL1a, could complement the TFL1 function and rescue early flowering and determinate inflorescence phenotype in tfl1-14 Arabidopsis mutant, thus suggesting that JcTFL1b and JcTFL1c may be homologues of TFL1. Transgenic Jatropha overexpressing JcTFL1a, JcTFL1b or JcTFL1c showed late flowering, whereas only JcTFL1b and JcTFL1c overexpression delayed flowering in transgenic Arabidopsis. JcTFL1b-RNAi transgenic Jatropha consistently exhibited moderately early flowering phenotype. JcFT and JcAP1 were significantly downregulated in transgenic Jatropha overexpressing JcTFL1a, JcTFL1b or JcTFL1c, which suggested that the late flowering phenotype of these transgenic Jatropha may result from the repressed expression of JcFT and JcAP1. Our results indicate that these three JcTFL1 genes play redundant roles in repressing flowering in Jatropha.


Subject(s)
Flowers/growth & development , Gene Expression Regulation, Plant , Jatropha/growth & development , Plant Proteins/metabolism , Arabidopsis/genetics , Arabidopsis/growth & development , Flowers/genetics , Genetic Complementation Test , Inflorescence , Jatropha/genetics , Phenotype , Plants, Genetically Modified/genetics , Plants, Genetically Modified/growth & development
15.
Plant Biotechnol Rep ; 9(6): 405-416, 2015.
Article in English | MEDLINE | ID: mdl-26640597

ABSTRACT

Jatropha curcas is considered a potential biodiesel feedstock crop. Currently, the value of J. curcas is limited because its seed yield is generally low. Transgenic modification is a promising approach to improve the seed yield of J. curcas. Although Agrobacterium-mediated genetic transformation of J. curcas has been pursued for several years, the transformation efficiency remains unsatisfying. Therefore, a highly efficient and simple Agrobacterium-mediated genetic transformation method for J. curcas should be developed. We examined and optimized several key factors that affect genetic transformation of J. curcas in this study. The results showed that the EHA105 strain was superior to the other three Agrobacterium tumefaciens strains for infecting J. curcas cotyledons, and the supplementation of 100 mM acetosyringone slightly increased the transient transformation frequency. Use of the appropriate inoculation method, optimal kanamycin concentration and appropriate duration of delayed selection also improved the efficiency of stable genetic transformation of J. curcas. The percentage of ß-glucuronidase positive J. curcas shoots reached as high as 56.0 %, and 1.70 transformants per explant were obtained with this protocol. Furthermore, we optimized the root-inducing medium to achieve a rooting rate of 84.9 %. Stable integration of the T-DNA into the genomes of putative transgenic lines was confirmed by PCR and Southern blot analysis. Using this improved protocol, a large number of transgenic J. curcas plantlets can be routinely obtained within approximately 4 months. The detailed information provided here for each step of J. curcas transformation should enable successful implementation of this transgenic technology in other laboratories.

16.
Int J Mol Sci ; 16(6): 12513-30, 2015 Jun 03.
Article in English | MEDLINE | ID: mdl-26047338

ABSTRACT

Real-time quantitative PCR (RT-qPCR) is a reliable and widely used method for gene expression analysis. The accuracy of the determination of a target gene expression level by RT-qPCR demands the use of appropriate reference genes to normalize the mRNA levels among different samples. However, suitable reference genes for RT-qPCR have not been identified in Sacha inchi (Plukenetia volubilis), a promising oilseed crop known for its polyunsaturated fatty acid (PUFA)-rich seeds. In this study, using RT-qPCR, twelve candidate reference genes were examined in seedlings and adult plants, during flower and seed development and for the entire growth cycle of Sacha inchi. Four statistical algorithms (delta cycle threshold (ΔCt), BestKeeper, geNorm, and NormFinder) were used to assess the expression stabilities of the candidate genes. The results showed that ubiquitin-conjugating enzyme (UCE), actin (ACT) and phospholipase A22 (PLA) were the most stable genes in Sacha inchi seedlings. For roots, stems, leaves, flowers, and seeds from adult plants, 30S ribosomal protein S13 (RPS13), cyclophilin (CYC) and elongation factor-1alpha (EF1α) were recommended as reference genes for RT-qPCR. During the development of reproductive organs, PLA, ACT and UCE were the optimal reference genes for flower development, whereas UCE, RPS13 and RNA polymerase II subunit (RPII) were optimal for seed development. Considering the entire growth cycle of Sacha inchi, UCE, ACT and EF1α were sufficient for the purpose of normalization. Our results provide useful guidelines for the selection of reliable reference genes for the normalization of RT-qPCR data for seedlings and adult plants, for reproductive organs, and for the entire growth cycle of Sacha inchi.


Subject(s)
Crops, Agricultural/genetics , Euphorbiaceae/growth & development , Euphorbiaceae/genetics , Plant Proteins/genetics , Real-Time Polymerase Chain Reaction/standards , Algorithms , Crops, Agricultural/chemistry , Crops, Agricultural/growth & development , Euphorbiaceae/chemistry , Flowers/genetics , Gene Expression Regulation, Developmental , Gene Expression Regulation, Plant , Organ Specificity , Plant Oils , Real-Time Polymerase Chain Reaction/methods , Reference Standards , Seeds/genetics
17.
BMC Plant Biol ; 14: 125, 2014 May 08.
Article in English | MEDLINE | ID: mdl-24886195

ABSTRACT

BACKGROUND: Physic nut (Jatropha curcas L.) is a potential feedstock for biofuel production because Jatropha oil is highly suitable for the production of the biodiesel and bio-jet fuels. However, Jatropha exhibits low seed yield as a result of unreliable and poor flowering. FLOWERING LOCUS T (FT) -like genes are important flowering regulators in higher plants. To date, the flowering genes in Jatropha have not yet been identified or characterized. RESULTS: To better understand the genetic control of flowering in Jatropha, an FT homolog was isolated from Jatropha and designated as JcFT. Sequence analysis and phylogenetic relationship of JcFT revealed a high sequence similarity with the FT genes of Litchi chinensis, Populus nigra and other perennial plants. JcFT was expressed in all tissues of adult plants except young leaves, with the highest expression level in female flowers. Overexpression of JcFT in Arabidopsis and Jatropha using the constitutive promoter cauliflower mosaic virus 35S or the phloem-specific promoter Arabidopsis SUCROSE TRANSPORTER 2 promoter resulted in an extremely early flowering phenotype. Furthermore, several flowering genes downstream of JcFT were up-regulated in the JcFT-overexpression transgenic plant lines. CONCLUSIONS: JcFT may encode a florigen that acts as a key regulator in flowering pathway. This study is the first to functionally characterize a flowering gene, namely, JcFT, in the biofuel plant Jatropha.


Subject(s)
Biofuels , Genes, Plant , Jatropha/genetics , Plant Proteins/genetics , Sequence Homology, Nucleic Acid , Amino Acid Sequence , Arabidopsis/genetics , Cloning, Molecular , Flowers/genetics , Flowers/physiology , Gene Expression Regulation, Plant , Genetic Complementation Test , Molecular Sequence Data , Mutation/genetics , Organ Specificity/genetics , Phenotype , Phloem/genetics , Phylogeny , Plant Proteins/chemistry , Plant Proteins/metabolism , Plants, Genetically Modified , Sequence Analysis, DNA
18.
J Biotechnol ; 155(2): 164-72, 2011 Sep 10.
Article in English | MEDLINE | ID: mdl-21762733

ABSTRACT

Most human serum albumin (HSA) for medical applications is derived from human plasma due to the lack of suitable heterologous expression systems for recombinant HSA (rHSA). To determine whether plant cell cultures could provide an alternative source, we employed the hyper-translatable cowpea mosaic virus protein expression system (CPMV-HT) to stably express rHSA in tobacco Bright Yellow-2 (BY-2) cells. rHSA was stably produced with yield up to 11.88µg/ml in the culture medium, accounting for 0.7% of total soluble protein, in a 25-ml flask. Cultivation of transgenic cells in modified Murashige and Skoog medium with a pH of 8.0 improved the yield of rHSA two-fold, which may be the result of reduced proteolytic activity in the modified medium. A simple purification scheme was developed to purify the rHSA from culture medium, resulting in a recovery of 48.41% of the secreted rHSA. Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and N-terminal sequence analysis of the purified rHSA revealed that plant cell-derived rHSA is identical to that of the plasma-derived HSA. Our results show that the CPMV-HT system, which was originally developed as a transient expression system for use in whole plants, can also be used for high-level expression of rHSA, a protein highly susceptible to proteolysis, in transgenic tobacco cells.


Subject(s)
Biotechnology/methods , Cell Culture Techniques/methods , Nicotiana/metabolism , Plants, Genetically Modified/metabolism , Recombinant Proteins/metabolism , Serum Albumin/metabolism , Blotting, Western , Cells, Cultured , Comovirus , Electrophoresis, Polyacrylamide Gel , Genetic Vectors , Humans , Mass Spectrometry , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Serum Albumin/genetics , Serum Albumin/isolation & purification
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