Genome-Wide Analysis of SQUAMOSA-Promoter-Binding Protein-like Family in Flowering Pleioblastus pygmaeus.

SQUAMOSA Promoter-Binding Protein-Like (SPL) family is well-known for playing an important role in plant growth and development, specifically in the reproductive process. Bamboo plants have special reproductive characteristics with a prolonged vegetative phase and uncertain flowering time. However, the underlying functions of SPL genes in reproductive growth are undisclosed in bamboo plants. In the study, a total of 28 SPLs were screened from an ornamental dwarf bamboo species, Pleioblastus pygmaeus. Phylogenetic analysis indicates that 183 SPLs from eight plant species can be classified into nine subfamilies, and the 28 PpSPLs are distributed among eight subfamilies. Homologous analysis shows that as many as 32 pairs of homologous genes were found between P. pygmaeus and rice, and 83 pairs were found between P. pygmaeus and Moso bamboo, whose Ka/Ks values are all <1. MiRNA target prediction reveals that 13 out of the 28 PpSPLs have recognition sites complementary to miRNA156. To screen the SPLs involved in the reproductive growth of bamboo plants, the mRNA abundance of the 28 PpSPLs was profiled in the different tissues of flowering P. pygmaeus and non-flowering plants by RNA-Seq. Moreover, the relative expression level of eight PpSPLs is significantly higher in flowering P. pygmaeus than that in non-flowering plants, which was also validated by RT-qPCR. Combined with phylogenetic analysis and homologous analysis, the eight significant, differentially expressed PpSPLs were identified to be associated with the reproductive process and flower organ development. Among them, there are four potential miRNA156-targeting PpSPLs involved in the flowering process. Of significant interest in the study is the identification of 28 SPLs and the exploration of four key flowering-related SPLs from P. pygmaeus, which provides a theoretic basis for revealing the underlying functions of SPLs in the reproductive growth of bamboo plants.

Optimizing organic amendment applications to enhance carbon sequestration and economic benefits in an infertile sandy soil.

A thorough understanding of the agricultural, ecological, and economic benefits of organic amendment (OA) application in infertile soils is crucial for facilitating agricultural sustainability. We conducted a three-year field study to evaluate the effects of OA application on soil organic carbon (SOC) sequestration, crop yields, and the net ecosystem economic benefit (NEEB) in a typical infertile sandy soil (with an initial SOC content of 2.56 g kg-1) of the ancient Yellow River alluvial plain. In addition to the control (CK; non-OA application), two types of OAs, namely, manure-based organic fertilizer (M) and spent mushroom residue (MR), were each applied at 12, 24, and 36 Mg ha-1 yr-1. Two scenarios of OA application practices, namely, conventional manual OA application (AMA) and mechanical OA application (AME), were considered in the economic evaluation. An increase of 1 g kg-1 SOC content could improve the crop yield by 2.25 Mg ha-1 yr-1. Compared with the CK, the application of OAs enhanced the SOC content and SOC stock by 14.6%-39.8% and 8.5%-28.2%, respectively. However, the SOC sequestration efficiency of the OAs tended to decrease under high rates of OA application. MR was observed to have greater potential than M in sequestering SOC and promoting soil aggregates. OA-induced SOC sequestration could neutralize 36.6%-97.8% of greenhouse gas emissions, which resulted in a reduction in the global warming potential and its cost by 0.62-2.68 Mg CO2-eq ha-1 yr-1 and 15.46-65.78 CNY ha-1 yr-1, respectively. Nevertheless, in terms of the NEEB, the benefits of OA application on crop yield and SOC sequestration were largely offset by the increased material and labor costs. Compared with AMA, AME could save 10%-27% of agricultural costs. The AME of MR at a rate of 24 Mg ha-1 yr-1 achieved the highest NEEB. The results of this study suggest that a strategy involving the appropriate OA, optimal application rate, and cheapest incorporation cost for a specific individual soil should be adopted to achieve a sustainable solution for promoting crop productivity, enhancing SOC sequestration, and ensuring farmer income in infertile farming regions.

Biochar and nitrogen fertilizer co-application changed SOC content and fraction composition in Huang-Huai-Hai plain, China.

Biochar can significantly enhance soil organic carbon (SOC) and crop yield, and it is therefore the preferred material for soil improvement in medium-low yield fields. In this study, a field experiment was designed to explore the impacts of biochar application on SOC content and fraction composition. Results indicated that incorporation of biochar into soil increased the SOC content by 26.9%-65.3% in the surface layer (0-10 cm) and 30.3%-63.0% in the subsurface layer (10-20 cm) of soil, while water-soluble organic carbon (WSOC) of the two layers was increased by 2.2-40.0% and 2.3-39.8%, respectively. Microbial biomass carbon decreased under conventional nitrogen treatments and increased with biochar addition under increased nitrogen application. The C:N value increased with biochar application, while the water-soluble C:N value of soil applied with 30 t ha-1 biochar was lower than that of soil applied with 15 t ha-1 biochar, both in the two tested soil layers. Wheat yield is evidently correlated with SOC, with the correlation coefficients of 0.919 and 0.952 in the surface and subsurface soil layers (P < 0.01), respectively. Particularly, increasing fulvic and humic acid-like compounds of WSOC promoted the bioavailability of nutrient elements, thereby increasing the crop yields. Therefore, biochar application is an effective means to fertilize middle-low yield soils through increasing SOC sequestration and nutrient reserves, or adjusting soil C:N value to a proper range, thereby reducing nutrient loss and increasing wheat yield.

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The aims of this study were to reveal the effects of biochar application combined with nitrogen fertilizer on soil physicochemical properties and crop yield in the typical ancient region of Yellow River, and to clarify the dynamics of carbon and nitrogen content and soil physicochemical properties with different treatments of biochar and nitrogen, which could provide scientific basis for reasonable fertilization of soil, quality improvement of cultivated land, and yield increase of winter wheat. A two-year field experiment was conducted with different biochar applications (0, 15, 30 t·hm-2) combined with different nitrogen levels (N 270, 330 kg·hm-2) to investigate their effects on soil physicochemical property in the typical ancient of Yellow River. After 2-yr biochar application, the generalized soil structure index (GSSI) was increased and three-phase structure distance index of soil (STPSD) was decreased, and three-phase ratio was significantly improved. The most ideal state of three-phase ratio was in the condition of 30 t·hm-2 biochar application. Soil compactness and bulk density was decreased, total porosity and capillary porosity was increased, water holding capacity was improved, water and gas permeability was enhanced, and soil hardening was relieved. The composition of soil aggregate was also changed. Soil aggregate >0.25 mm particle size was increased by 70.6%-94.4%, and mean weight diameter (MWD) was improved by 24.0%-48.0%. Biochar application significantly increased organic carbon content by 15.8%-67.0%, adjusted soil C/N, reduced nitrogen release intensity, improved utilization rate of nitrogen fertili-zer, and enhanced soil fertility. However, it didn't increase soil pH. Soil pH showed a significant downward in 10-20 cm layer. With the same amount of nitrogen application, biochar application significantly increased average yield of winter wheat by 9.6%-25.6% in two years. With the same amount of biochar application, average yield of winter wheat with high nitrogen application was 2.5%-4.4% higher than that with conventional nitrogen application. In summary, combined biochar and nitrogen application could improve soil micro-environment, soil fertility and crop yield. Comprehensively considering soil modification, crop yield improvement and input cost, the optimum amount of fertilization was biochar application (30 t·hm-2) combined with nitrogen fertilizer (330 kg·hm-2).

Transcriptome analysis of salt-responsive and wood-associated NACs in Populus simonii × Populus nigra.

BACKGROUND: NAC (NAM, ATAF1-2, and CUC2) family is one of the largest plant-specific transcription factor families known to play significant roles in plant development processes and stress responses. RESULTS: In the study, a total of 112 NACs were identified to be differentially expressed in the comparisons of leaves and stems, leaves and roots, roots and stems of Populus simonii×P. nigra among 289 members by RNA-Seq. And 148, 144 and 134 NACs were detected to be salt-responsive in the roots, stems and leaves under 150 mM NaCl stress, respectively. Among them, a total of 53 salt-responsive NACs were shared across the three tissues. Under salt stress, 41/37 NACs were identified to be up/down-regulated in the leaves of Populus simonii × P.nigra among 170 non-redundant NACs by RT-qPCR, which was similar with RNA-Seq results. The expression pattern analysis of 6 NACs including four randomly up-regulated genes (NAC86, NAC105, NAC139 and NAC163) and two down-regulated genes (NAC15 and NAC149) indicated a few NACs showed specific temporal and spatial expression patterns in the three tissues of Populus simonii×P.nigra. Based on transcriptome screening and phylogenic analysis of differentially expressed NACs in different tissues under salt stress, 18 potential NACs associated with wood formation and 20 involved in stress responses were identified in Populus simonii×P.nigra. CONCLUSIONS: The study further gains an understanding of the connection of tissue specificity and gene function in poplar, and lays the foundation of functional analysis of poplar NACs in stress responses.

A novel effect of glycine on the growth and starch biosynthesis of storage root in sweetpotato (Ipomoea batatas Lam.).

Sweetpotato (Ipomoea batatas Lam.) plays an indispensable role in feed, starch-based industries and ethanol biofuel production. Few studies have investigated on how external amino acids affect the growth and production of sweetpotato. In the study, we evaluated morphological, physiological and molecular effects of external glycine (Gly) on the root growth and starch metabolism of sweetpotato, Xushu16. At morphological level, the Xushu16 with Gly stimuli had larger plant biomass than that under control condition. At physiological level, the photosynthesis strength of the Xushu16 with Gly treatments showed significant differences relative to those under control condition. The relative content of plant hormone and starch in storage roots was higher under Gly conditions than that under control condition. At molecular level, a total of 4836 differentially expression genes were identified in the storage roots with different Gly treatments by RNA-Seq. Among them, as many as 1830 genes were involved in carbohydrate metabolism, which held maximum proportion among all the DEGs. Further, a few genes involved in starch biosynthesis were proved to be Gly-induced significantly by RT-qPCR. All the results indicated extrinsic Gly promotes the growth of storage roots by strengthening photosynthesis and increasing plant hormone, and enhances starch biosynthesis of storage roots by accelerating carbohydrate metabolism and regulating the expression of starch-related genes.