Annexin A protein family: Focusing on the occurrence, progression and treatment of cancer.

The annexin A (ANXA) protein family is a well-known tissue-specific multigene family that encodes Ca2+ phospholipid-binding proteins. A considerable amount of literature is available on the abnormal expression of ANXA proteins in various malignant diseases, including cancer, atherosclerosis and diabetes. As critical regulatory molecules in cancer, ANXA proteins play an essential role in cancer progression, proliferation, invasion and metastasis. Recent studies about their structure, biological properties and functions in different types of cancers are briefly summarised in this review. We further discuss the use of ANXA as new class of targets in the clinical diagnosis and treatment of cancer.

Profiles of antibiotic- and heavy metal-related resistance genes in animal manure revealed using a metagenomic analysis.

Farmed animals produce excrement containing excessive amounts of toxic heavy metals as a result of consuming compound feed as well as receiving medical treatments, and the presence of these heavy metals may aggravate the risk of spreading drug-resistance genes through co-selection during manure treatment and application processes. However, research on the association between heavy metals and antimicrobial resistance is still lacking. In this study, metagenomic sequencing was used to explore the effects of the co-selection of environmentally toxic heavy metals on the resistome in manure. A relevance network analysis showed that metal-resistance genes (MRGs), especially for copper (Cu) and zinc (Zn), were positively correlated with multiple types of antibiotic-resistance genes (ARGs) and formed a complex network. Most bacteria that co-occurred with both MRGs and ARGs simultaneously are members of Proteobacteria and accounted for 54.7% of the total microbial species in the relevance network. The remaining bacteria belonged to Firmicutes, Bacteroidetes and Actinobacteria. Among the four phyla, Cu- and Zn-resistance genes had more complex correlations with ARGs than other MRG types, reflecting the occurrence of ARG co-selection under the selective pressure of high Cu and Zn levels. In addition, approximately 64.8%, 59.1% and 68.4% of MRGs that correlated with the presence of plasmids, viruses and prophages, respectively, are Cu- or Zn-resistant, and they co-occurred with various ARGs, indicating that mobile genetic elements participate in mediating ARG co-selection in response to Cu and Zn pressure. The results indicated that the use of heavy-metal additives in feed induces the increases of drug resistance genes in manure through co-selection, aggravating the risk of antimicrobial resistance diffusion from animal farm to manure land applications.

Genetic suppressors of Δgrx3 Δgrx4, lacking redundant multidomain monothiol yeast glutaredoxins, rescue growth and iron homeostasis.

Saccharomyces cerevisiae Grx3 and Grx4 are multidomain monothiol glutaredoxins that are redundant with each other. They can be efficiently complemented by heterologous expression of their mammalian ortholog, PICOT, which has been linked to tumor development and embryogenesis. PICOT is now believed to act as a chaperone distributing Fe-S clusters, although the first link to iron metabolism was observed with its yeast counterparts. Like PICOT, yeast Grx3 and Grx4 reside in the cytosol and nucleus where they form unusual Fe-S clusters coordinated by two glutaredoxins with CGFS motifs and two molecules of glutathione. Depletion or deletion of Grx3/Grx4 leads to functional impairment of virtually all cellular iron-dependent processes and loss of cell viability, thus making these genes the most upstream components of the iron utilization system. Nevertheless, the Δgrx3/4 double mutant in the BY4741 genetic background is viable and exhibits slow but stable growth under hypoxic conditions. Upon exposure to air, growth of the double deletion strain ceases, and suppressor mutants appear. Adopting a high copy-number library screen approach, we discovered novel genetic interactions: overexpression of ESL1, ESL2, SOK1, SFP1 or BDF2 partially rescues growth and iron utilization defects of Δgrx3/4. This genetic escape from the requirement for Grx3/Grx4 has not been previously described. Our study shows that even a far-upstream component of the iron regulatory machinery (Grx3/4) can be bypassed, and cellular networks involving RIM101 pH sensing, cAMP signaling, mTOR nutritional signaling, or bromodomain acetylation, may confer the bypassing activities.

Mechanism of biochar on nitrification and denitrification to N2O emissions based on isotope characteristic values.

To clarify the mechanism of biochar on nitrification and denitrification to N2O emissions in farmland soil, the effects of combined application of biochar and different nitrogen sources on the contributions of nitrification and denitrification to N2O emissions were studied using isotope characteristic values. The results showed that the soil N2O emissions from ammonium nitrogen fertilizer treatments were significantly higher than that from nitrate nitrogen fertilizer treatments. The biochar combined with ammonium nitrogen fertilizer reduced soil N2O emissions by 31.0%-30.8%, and biochar combined with nitrate nitrogen fertilizer reduced soil N2O emissions by 70.6%-63.0%. The isotope model showed that the application of ammonium nitrogen fertilizer was more favorable for soil nitrification in the early stage of the experiment (0-2 d), and more favorable for denitrification in the middle and later stages of the experiment (3-17 d). Application of nitrate nitrogen fertilizer enhanced the nitrification of soil nitrifying bacteria in the early and middle stages of the experiment (0-8 d), and the denitrification of soil denitrifying bacteria in the later stage of the experiment (9-17 d). The effects of biochar on N2O emissions were mainly in the middle and later stages of the experiment by promoting the nitrification of nitrifying bacteria and inhibiting denitrification of denitrifying bacteria, so as to reduce N2O emission in soil. These results may help to understand the mitigation mechanism of biochar on N2O emission in upland soil.

Effectiveness of transverse tibial bone transport in treatment of diabetic foot ulcer: A systematic review and meta-analysis.

Background: Diabetic foot ulcerations (DFUs) are a common but highly morbid complication of long-standing diabetes, carrying high rates of associated major amputation and mortality. Transverse tibial bone transport (TTT) has recently been applied for treatment of DFUs with the aim of accelerating wound healing. This study was performed to evaluate the effectiveness and safety of TTT in patients with DFUs. Methods: Two authors independently retrieved the platforms of PubMed, Embase and CENTRAL, to identify studies associated with treatment of DFUs with TTT. Quantitative meta-analyses were performed to pool all available outcomes about the effectiveness and complications of TTT operation, with fixed- (I2<50%) or random-effect (I2>50%) model according to I2. Results: A total of 7 studies, involving 818 participants, were included, with 661 participants treated with TTT operation. The pooled healing rate and limb salvage rate were 0.96 (95%CI: 0.93~0.98) and 0.98 (95%CI: 0.95~1.00) respectively after treatment with TTT. The pooled mean healing time was 15.03 (95%CI: 9.05~21.00) months. When compared with the pre-operative baseline values, the ankle-brachial index (ABI, MD: 0.23; 95%CI: 0.03~0.44; p<0.001), skin temperature (MD: 1.56; 95%CI: 0.30~2.81; p<0.001), and visual analogue scale (VAS, MD: 3.70; 95%CI: 1.97~5.44; p<0.001) were significantly improved at the final follow-up. When compared with non-TTT group, the TTT group was associated with higher healing rate (OR: 10.43; 95%CI: 3.96~27.43; p<0.001) and limb salvage rate (OR: 9.65; 95%CI: 3.30~28.20; p<0.001). Concerning the complications of the TTT process, the pooled risks of fracture at transportation site and pin-site infection were 0.02 (95%CI: 0.00~0.04) and 0.08 (95%CI: 0.00~0.22), respectively; and the DFU recurrence rate in TTT group was significantly lowered comparing to that of the non-TTT group (RR: 0.18; 95%CI: 0.06~0.49; p=0.001). Conclusions: TTT operation was associated with high healing rate and limb salvage rate, and could significantly improve the ABI, skin temperature, and VAS after operation. When compared with the control group, TTT group provided significantly higher healing rate and limb salvage rate. However, TTT operation should be conducted with caution concerning the incidences of fracture at tibia, infection at pin channels and necrosis of skin overlying the anterior tibia.

Biogas slurry application could potentially reduce N2O emissions and increase crop yield.

The huge excrement quantity from the increasing large-scale livestock stressed the ecological, environmental deterioration. As a major benefit for handling livestock manure, the slurry of biogas (BS) is developed during the production of biogas that might increase plant productivity. However, nitrous oxide (N2O) emissions from BS are considered a significant danger to the environment due to global warming potential. Furthermore, applying different proportions of BS combined with chemical fertilizer (CF) on N2O productions in the North China Plain (NCP) remains unclear. Herein, two sequential field trials were performed by maize-wheat rotations to substitute the CF by BS and reduce N2O emissions while keeping the crop yield stable. Four treatments were conducted, including T1, T3, T6, and CK. A total of 226.5 kg N ha-1 used in the maize-wheat rotation system. Additionally, different ratios of BS (100%, 80%, and 50%) combined with CF were used in wheat season in the tillering stage. Results showed integrated applications of BS with CF have potential for reducing N2O emission. Our findings showed that the maximum grain yield of CF was 6250 kg ha-1, which might be achieved by applying 38% BS and 62% of CF. This ratio yielded 1.03 kg ha-1 N2O emissions, which was 15% lesser than the N2O emission of CK, 1.21 kg ha-1. Considering whole growing period of wheat biogas treatments significantly reduced the cumulative N2O emissions from 17% to 26% compared to CF. To achieve maximum yield and minimum N2O emissions, an optimum 38% BS ratio has been suggested. The integrated use of BS and CF provided the greatest grain yield because of necessary nutrients provided by both slurry and CF. Consequently, N2O emissions reduced based on frequency and type of fertilizer. In conclusion, 38% ratio of BS combined with 62% CF would be a suitable approach to mitigate N2O emission and simultaneously increase crop yield in NCP.

[Effects of Biochar and Straw on Soil N2O Emission from a Wheat Maize Rotation System].

The effects of biochar and straw return on soil N2O emissions were studied in the winter wheat-summer maize rotation system of intensively farmed land in North China to provide a theoretical basis for N2O emission reduction and the efficient straw utilization. The experiment included the following four treatments:① Control (CK); ② Biochar application at a rate of 9.0 t·(hm2·a)-1 (C); ③ Straw return (SR); and ④ Straw return plus biochar application at a rate of 9.0 t·(hm2·a)-1 (C+SR). The results showed that in the wheat season, the CK treatment showed a slight decrease in soil N2O emission while the SR and C+SR treatments promoted soil N2O emission by 47.4% and 71.8%, respectively. In the maize-growing season, the CK treatment reduced soil N2O emission by 29.8% while the SR and C+SR treatments increased soil N2O emission by 13.4% and 35.8%, respectively. During the wheat-growing season, the soil water, NH4+-N, and MBN content were the main environmental factors affecting N2O emissions; during the maize-growing season, NO3--N, NH4+-N, and MBC content were the main environmental factors affecting emissions. Based on our results, the application of biochar to cropland is an effective option for mitigating greenhouse gas emissions, whereas direct straw return to fields might not be an effective strategy. More research is now needed to examine the effect of the return of straw of different maturity on N2O emissions.

Effects of biochar on nitrification and denitrification-mediated N2O emissions and the associated microbial community in an agricultural soil.

Nitrous oxide (N2O) is a strong greenhouse gas, and it is of great significance for N2O reduction to study the effects of biochar on its production pathway. In this research, the contributions and mechanisms of biochar on autotrophic nitrification (ANF), heterotrophic nitrification (HNF), and denitrification (DF) to N2O emissions were studied by using 15N stable isotopes and high-throughput sequencing after laboratory incubation. The results showed that biochar addition at 2% (B2) significantly reduced the N2O emissions from the ANF by an average of 20.6%, while adding 5% biochar (B5) had no significant effect on the ANF. Both B2 and B5 significantly reduced the N2O emissions from the HNF by 15.7% and 13.2%, respectively, and reduced the N2O emissions from the DF by 40.9% and 11.7%, respectively. B2 enhanced the relative contribution rate of the ANF to N2O emissions by 6.3%, while B5 had little effect on it. Biochar addition significantly changed the copy numbers of the AOA and AOB, as well as the nirK, nirS, and nosZ genes, but it had no significant effect on the community composition of the AOA and had minimal effect on the AOB community. B2 significantly increased the abundance of the genus Rhodococcus of nirK type denitrifiers and had a significant effect on the relative abundance of Cupriavidus and Pseudomonas of the nosZ type denitrifiers. These results revealed that the inhibitory effects of biochar on N2O emissions from nitrification might be attributed to the direct immobilization and adsorption of inorganic N by biochar and to its promotion of the genus Rhodococcus of nirK-type denitrifiers and the genera Cupriavidus and Pseudomonas of the nosZ-type denitrifiers. The soil exchangeable NH4+-N and NO3--N concentrations were the primary factors affecting the N2O emission rates. These results help to elucidate the effects and mechanisms of biochar on N2O production pathways in agricultural soil.

Conservation tillage for 17 years alters the molecular composition of organic matter in soil profile.

Conservation tillage is considered as a potential measure to mitigate climate change by sequestering soil organic matter (SOM), however its stabilization mechanisms remain elusive. In this study, we revealed the molecular composition of SOM in soil profile (~50 cm depth) from a 17-yr tillage experiment in North China. The soils were collected from 0-10, 10-20, 20-30 and 30-50 cm layers under conventional tillage (CT), and conservation tillage such as rotary tillage (RT) and no-tillage (NT). The sequential solvent extraction and CuO oxidation methods were used to quantify free lipids and lignin-derived phenols. The results showed that NT (cf. CT) increased labile compounds (i.e., carbohydrates) and plant-derived SOM (i.e., long-chain (≥C20) aliphatic lipids and steroids) in the 0-10 and 30-50 cm layers. The RT (cf. CT) increased the total free lipids by 72-133% in the sublayers (>10 cm). The RT (cf. CT and NT) resulted in higher preservation of plant-derived (≥C20 aliphatic lipids and steroids) and microbial-derived compounds (

Community diversity, structure and carbon footprint of nematode food web following reforestation on degraded Karst soil.

We examined community diversity, structure and carbon footprint of nematode food web along a chronosequence of T. Sinensis reforestation on degraded Karst. In general, after the reforestation: a serious of diversity parameters and community indices (Shannon-Weinier index (H'), structure index (SI), etc.) were elevated; biomass ratio of fungivores to bacterivores (FFC/BFC), and fungi to bacteria (F/B) were increased, and nematode channel ratio (NCR) were decreased; carbon footprints of all nematode trophic groups, and biomass of bacteria and fungi were increased. Our results indicate that the Karst aboveground vegetation restoration was accompanied with belowground nematode food web development: increasing community complexity, function and fungal dominance in decomposition pathway, and the driving forces included the bottom-up effect (resource control), connectedness of functional groups, as well as soil environments.

[Nitrogen uptake rate and use efficiency by rice under different levels of the controlled-release N fertilizers (CRF) in the Nansi Lake basin].

The nitrogen (N) fertilizers overused or misused are the main contributors for water eutrophication of the Nansi Lake in eastern China. A field experiment with different application levels of controlled-release N fertilizer (CRF) was carried out at a rice field in the Nansi lake basin to provide information on the nitrogen uptake rate and use efficiency by rice with CRF application at different growth stages of rice. The fertilization levels for the controlled fertilizer in this study were 0, 300, 337.5 and 375 kg/hm2, respectively, and 375 kg/hm2 for conventional urea (CU). We estimated the N uptake rate in different growing season and apparent recovery of fertilizer in root, stover and grain of rice. The result showed that grain yield increased by higher N rate. However, the N uptake rate did not increase linearly with the nitrogen application amount. The highest N uptake rate was 22.48 mg/(plant x d) under the fertilization amount of 337.5 kg/hm2 during the young panicle differentiation stage. Apparent N recovery efficiency for CU with traditional application amount of 375 kg/hm2 was 21.86%. Apparent N recovery efficiency for CRF with application amount of 337.5 kg/hm2 was highest with 37.17%. Based on the statistical data, with CU of traditional urea application amount of 375 kg/hm2, nitrogen loss and soil N residue at one growing season are 130.07 x 10(3) t for Jining city and 11.4 x 10(3) t for Yutai county of the Nansi Lake basin. If using CRF with the optimized application amount of 337.5 kg/hm2, nitrogen loss and soil residual at one growing season is 10.46 x 10(4) t for Jining city. It could reduce losses of 2.55 x 10(4) t N for Jining city and 2 235.26 t N for Yutai county per year. Because of releasing patterns more closely matched to crop N uptake patterns, controlled release N fertilizer could be a good way to prevent water eutrophication due to nitrogen fertilizer overused or misused in the Nansi Lake.

[Unspecified peripheral T cell lymphoma with distinct lymphoid follicules].

OBJECTIVE: To investigate the morphological features and immunophenotype of unspecified peripheral T cell lymphoma with distinct lymphoid follicular growth pattern. METHODS: Three cases of peripheral T cell lymphoma with special pathohistological features were collected. Morphologic analysis and immunohistochemical staining for CD3, CD45RO, CD43, CD20, CD79a, cyclinD1, bcl-2, CD4, CD8 and S-100 were performed. PCR was used to study TCR gamma gene rearrangements. RESULTS: The main symptoms of all the three patients with the primary sites of cervix and lower jaw. There were intermittent fever and skin rashes in the course of the disease. Morphological study showed lymphoid follicular reactive hyperplasia, mantle zone disappear, prominent infiltration of marginal zones by medium-sized tumor cells with clear cytoplasm and significant nuclear atypia. The immunophenotypic profile confirmed that they were T cell lymphomas. TCR gamma gene rearrangements were found in all the three patients. CONCLUSION: In some unspecified peripheral T cell lymphomas, the distinct follicular growth pattern and incomplete effacement of the lymph node architecture make it necessary to differentiate them from reactive hyperplasia, marginal zone B cell lymphoma, follicular B cell lymphoma and mantle cell lymphoma.