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1.
Brain Inform ; 11(1): 1, 2024 Jan 08.
Article in English | MEDLINE | ID: mdl-38190053

ABSTRACT

Functional magnetic resonance imaging (fMRI) provides insights into complex patterns of brain functional changes, making it a valuable tool for exploring addiction-related brain connectivity. However, effectively extracting addiction-related brain connectivity from fMRI data remains challenging due to the intricate and non-linear nature of brain connections. Therefore, this paper proposed the Graph Diffusion Reconstruction Network (GDRN), a novel framework designed to capture addiction-related brain connectivity from fMRI data acquired from addicted rats. The proposed GDRN incorporates a diffusion reconstruction module that effectively maintains the unity of data distribution by reconstructing the training samples, thereby enhancing the model's ability to reconstruct nicotine addiction-related brain networks. Experimental evaluations conducted on a nicotine addiction rat dataset demonstrate that the proposed GDRN effectively explores nicotine addiction-related brain connectivity. The findings suggest that the GDRN holds promise for uncovering and understanding the complex neural mechanisms underlying addiction using fMRI data.

2.
Comput Math Methods Med ; 2022: 8501828, 2022.
Article in English | MEDLINE | ID: mdl-35186116

ABSTRACT

Computed tomography (CT) is a common modality for liver diagnosis, treatment, and follow-up process. Providing accurate liver segmentation using CT images is a crucial step towards those tasks. In this paper, we propose a stacked 2-U-Nets model with three different types of skip connections. The proposed connections work to recover the loss of high-level features on the convolutional path of the first U-Net due to the pooling and the loss of low-level features during the upsampling path of the first U-Net. The skip connections concatenate all the features that are generated at the same level from the previous paths to the inputs of the convolutional layers in both paths of the second U-Net in a densely connected manner. We implement two versions of the model with different number of filters at each level of each U-Net by maximising the Dice similarity between the predicted liver region and that of the ground truth. The proposed models were trained with 3Dircadb public dataset that were released for Sliver and 3D liver and tumour segmentation challenges during MICCAI 2007-2008 challenge. The experimental results show that the proposed model outperformed the original U-Net and 2-U-Nets variants, and is comparable to the state-of-the-art mU-Net, DC U-Net, and Cascaded UNET.


Subject(s)
Liver/diagnostic imaging , Neural Networks, Computer , Tomography, X-Ray Computed/statistics & numerical data , Computational Biology , Humans , Imaging, Three-Dimensional/statistics & numerical data , Liver Neoplasms/diagnostic imaging , Machine Learning , Radiographic Image Interpretation, Computer-Assisted/statistics & numerical data
3.
Clin Ter ; 169(5): e217-e223, 2018.
Article in English | MEDLINE | ID: mdl-30393808

ABSTRACT

INTRODUCTION: The first step in the forensic identification is sex determination followed by age and stature estimation, as both are sex-dependent. The mandible is the largest, strongest and most durable bone in the face. Mandible is important for sex confirmation in absence of a complete pelvis and skull. AIM: The aim of the present study was to determine sex of human mandible from morphology, morphometric measurements as well as discriminant function analysis from the CT scan. MATERIALS AND METHODS: The present retrospective study comprised 79 subjects (48 males, 31 females), with age group between 18 and 74 years, and were obtained from the post mortem computed tomography data in the Hospital Kuala Lumpur. The parameters were divided into three morphologic and nine morphometric parameters, which were measured by using Osirix MD Software 3D Volume Rendering. RESULTS: The Chi-square test showed that men were significantly association with square-shaped chin (92%), prominent muscle marking (85%) and everted gonial glare, whereas women had pointed chin (84%), less prominent muscle marking (90%) and inverted gonial glare (80%). All parameter measurements showed significantly greater values in males than in females by independent t-test (p< 0.01). By discriminant analysis, the classification accuracy was 78.5%, the sensitivity was 79.2% and the specificity was 77.4%. The discriminant function equation was formulated based on bigonial breath and condylar height, which were the best predictors. CONCLUSION: In conclusion, the mandible could be distinguished according to the sex. The results of the study can be used for identification of damaged and/or unknown mandible in the Malaysian population.


Subject(s)
Mandible/anatomy & histology , Mandible/diagnostic imaging , Sex Determination by Skeleton/methods , Adolescent , Adult , Aged , Discriminant Analysis , Female , Forensic Anthropology , Humans , Imaging, Three-Dimensional , Malaysia , Male , Middle Aged , Retrospective Studies , Tomography, X-Ray Computed , Young Adult
4.
PLoS One ; 12(11): e0187558, 2017.
Article in English | MEDLINE | ID: mdl-29121077

ABSTRACT

Landmarks, also known as feature points, are one of the important geometry primitives that describe the predominant characteristics of a surface. In this study we proposed a self-contained framework to generate landmarks on surfaces extracted from volumetric data. The framework is designed to be a three-fold pipeline structure. The pipeline comprises three phases which are surface construction, crest line extraction and landmark identification. With input as a volumetric data and output as landmarks, the pipeline takes in 3D raw data and produces a 0D geometry feature. In each phase we investigate existing methods, extend and tailor the methods to fit the pipeline design. The pipeline is designed to be functional as it is modularised to have a dedicated function in each phase. We extended the implicit surface polygonizer for surface construction in first phase, developed an alternative way to compute the gradient of maximal curvature for crest line extraction in second phase and finally we combine curvature information and K-means clustering method to identify the landmarks in the third phase. The implementations are firstly carried on a controlled environment, i.e. synthetic data, for proof of concept. Then the method is tested on a small scale data set and subsequently on huge data set. Issues and justifications are addressed accordingly for each phase.


Subject(s)
Imaging, Three-Dimensional , Models, Theoretical
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