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1.
Schizophr Res ; 254: 68-75, 2023 04.
Article in English | MEDLINE | ID: mdl-36801516

ABSTRACT

This study aimed to identify risk factors for involuntary referral by police to emergency room (ER) psychiatric services for community-based patients with a mental illness via a generalized estimating equation (GEE) analysis. The analysis was based on data from the Management Information System of Psychiatric Care (MISPC) system for patients with a severe mental illness in Taipei, Taiwan and registered referral records of the police. Data on 6378 patients aged ≥20 years were used in this study, including 164 patients who were involuntarily referred to the ER by the police and 6214 patients who were not during the period of January 1, 2018 to December 31, 2020. GEEs were utilized to explore possible risk factors of repeated involuntary referral to ER psychiatric services for patients with a severe mental illness. The logistic regressions indicated that patients defined as "severe" according to the Mental Health Act of Taiwan (crude odds ratio (OR): 3.840, 95 % confidence interval (CI): 2.407-6.126), with a disability (crude OR: 3.567, 95 % CI: 1.339-9.501), with two or more family members with a psychiatric disorder (crude OR: 1.598, 95 % CI: 1.002-2.548), with a history of a suicide attempt (crude OR: 25.582, 95 % CI: 17.608-37.167), and with a history of domestic violence (crude OR: 16.141, 95 % CI: 11.539-22.579) were positively associated with involuntary referral to ER psychiatric services. However, age (crude OR: 0.971, 95 % CI: 0.960-0.983) and the MISPC score (crude OR: 0.834, 95 % CI: 0.800-0.869) were inversely associated with involuntary referral to ER psychiatric services. After adjusting for demographics and potential confounders, we found that patients defined as "severe" (Exp (ß): 3.236), with a disability (Exp (ß): 3.715), with a history of a suicide attempt (Exp (ß): 8.706), and with a history of domestic violence (Exp (ß): 8.826), as well as age (Exp (ß): 0.986) and the MISPC score (Exp (ß): 0.902) remained significantly associated with repeated involuntary referral to ER psychiatric services. In conclusion, community-based mentally ill patients with a history of a suicide attempt, with a history of domestic violence, with a severe illness, and with a profound level of disability were highly associated with involuntary referral to ER psychiatric services. We suggest that community mental health case managers identify significant factors associated with involuntary referral to ER psychiatric services to accordingly arrange case management plans.


Subject(s)
Emergency Services, Psychiatric , Mental Disorders , Humans , Mental Disorders/epidemiology , Mental Disorders/therapy , Mental Disorders/psychology , Police , Referral and Consultation , Risk Factors , Adult
2.
Eur Rev Med Pharmacol Sci ; 22(17): 5531-5538, 2018 09.
Article in English | MEDLINE | ID: mdl-30229825

ABSTRACT

OBJECTIVE: To investigate the biological role of micro-ribonucleic acid (miR)-29a in non-small-cell lung cancer (NSCLC). PATIENTS AND METHODS: 55 cases of NSCLC tissue specimens and paired normal lung tissue specimens collected in the Department II of Oncology, Ruikang Hospital Affiliated to Guangxi University of Chinese Medicine from July 2012 to April 2015 were randomly included. The fluorescent quantitative polymerase chain reaction, Western blotting, and immunohistochemistry were performed to detect the expression levels of miR-29a and metastasis suppressor 1 (MTSS1). Pearson correlation analysis was utilized to investigate the relationship between miR-29a expression and MTSS1 expression in NSCLC tissues, and the Kaplan-Meier survival curves were constructed to analyze the association of miR-29a expression with the survival time of NSCLC patients. A54 proliferation and invasion abilities were measured by means of plate clone formation assay, and transwell assay after the miR-29a was suppressed by miRNA inhibitor. Luciferase assay was used to detect the target gene of miR-29a. RESULTS: In NSCLC tissues, the miR-29a expression level was higher than that in normal lung tissues (p<0.05), while the expression level of MTSS1 protein was remarkably lower than that in normal lung tissues (p<0.05). The median survival time of the patients was 15.1 months in high miR-29a expression group and 18.3 months in low miR-29a expression group (p<0.05). The miR-29a expression was negatively correlated with the expression level of MTSS1 protein in NSCLC tissues (r=-0.762, p<0.05). Luciferase results suggest that miR-29a binds to the promoter region of MTSS1 and inhibits its transcription level. The expression of MTSS1 protein was up-regulated notably after miR-29a knockdown by an inhibitor. It was revealed in the results of transwell assay and plate clone formation assay that the proliferative and invasive capacity of A549 cells was significantly decreased after knockdown of miR-29a. CONCLUSIONS: The transcribed miR-29a down-regulates the protein level of MTSS1, suppressor of tumor proliferation and invasion, thereby promoting the proliferative and invasive capacity of NSCLC cells. Both miR-29a and MTSS1 are expected to become potential therapeutic targets for NSCLC.


Subject(s)
Carcinoma, Non-Small-Cell Lung/metabolism , Cell Proliferation/physiology , Lung Neoplasms/metabolism , MicroRNAs/biosynthesis , Microfilament Proteins/biosynthesis , Neoplasm Proteins/biosynthesis , A549 Cells , Adult , Aged , Carcinoma, Non-Small-Cell Lung/genetics , Carcinoma, Non-Small-Cell Lung/pathology , Cell Movement/physiology , Female , Humans , Lung Neoplasms/genetics , Lung Neoplasms/pathology , Male , MicroRNAs/genetics , Microfilament Proteins/antagonists & inhibitors , Microfilament Proteins/genetics , Middle Aged , Neoplasm Invasiveness/genetics , Neoplasm Invasiveness/pathology , Neoplasm Proteins/antagonists & inhibitors , Neoplasm Proteins/genetics
3.
Biochem J ; 346 Pt 3: 799-804, 2000 Mar 15.
Article in English | MEDLINE | ID: mdl-10698709

ABSTRACT

Approximately 95% of the amino acid sequence of a shrimp (Penaeus japonicus) nuclease was derived from protease-digested peptides. A 1461-base cDNA for the nuclease was amplified and sequenced with degenerate primers based on the amino acid sequence and then specific primers by 3' and 5' RACE (rapid amplification of cDNA ends). It contains an open reading frame encoding a putative 21-residue signal peptide and a 381-residue mature protein. The N-terminus of the enzyme is pyroglutamate, deduced from composition and matrix-assisted laser desorption ionization-time-of-flight MS analyses, and confirmed by a glutamine residue in the cDNA sequence. The enzyme has 11 Cys residues, forming five intramolecular disulphides. The eleventh Cys residue was linked to a thiol compound with an estimated molecular mass of between 500 and 700 Da. A sequence similarity search revealed no homologous proteins but residues 205-255 shared a conserved active-site motif within a distinct group of nucleases. His(211) in this conserved motif was shown to be very important in catalysis by site-specific modification with (14)C-labelled iodoacetate. The shrimp nuclease, previously designated DNase I, does indeed possess a low level of hydrolytic activity towards RNA in the presence of Mg(2+) and Ca(2+). The conservation of functionally important residues during distant evolution might imply that the catalytic mechanisms are similar in these nucleases, which should be classified in one subfamily. Finally, an active-site structure for shrimp nuclease was proposed on the basis of published structural data and the results of mutational and biochemical analyses of Serratia nuclease.


Subject(s)
Digestive System/enzymology , Endonucleases/genetics , Amino Acid Sequence , Animals , Arthropod Proteins , Base Sequence , Binding Sites , Cloning, Molecular , DNA, Complementary , Decapoda , Disulfides/chemistry , Endonucleases/chemistry , Endonucleases/metabolism , Models, Molecular , Molecular Sequence Data , Sequence Homology, Amino Acid
4.
Biochem J ; 339 ( Pt 2): 261-7, 1999 Apr 15.
Article in English | MEDLINE | ID: mdl-10191256

ABSTRACT

The complete amino acid sequence of the fungus Syncephalastrum racemosum (Sr-) nuclease has been delineated on the basis of protein sequencing of the intact protein and its protease-digested peptides. The resulting 250-residue sequence shows a carbohydrate side chain attached at Asn134 and two half-cystine residues (Cys242 and Cys247) cross-linked to form a small disulphide loop. On the basis of the sequence of Sr-nuclease, a computer search in the sequence database yielded 60% and 48% positional identities with the sequences of Cunninghamella echinulata nuclease C1 and yeast mitochondria nuclease respectively, and very little similarity to those of several known mammalian DNases I. Sequence alignment of the three similar nucleases reveals that the single small disulphide loop is unchanged but the carbohydrate attachment in Sr-nuclease is absent from the other two nucleases. Alignment also shows a highly conserved region harbouring Sr-nuclease His85, which is assigned as one of the essential residues in the active site. The cDNA encoding Sr-nuclease was amplified by using reverse transcriptase-mediated PCR with degenerate primers based on its amino acid sequence. Subsequently, specific primers were synthesized for use in the 3' and 5' rapid amplification of cDNA ends (RACE). Direct sequencing of the RACE products led to the deduction of a 1.1 kb cDNA sequence for Sr-nuclease. The cDNA contains an open reading frame of 320 amino acid residues including a 70-residue putative signal peptide and the 250-residue mature protein. Finally, the recombinant Sr-nuclease was expressed in Escherichia coli strain BL21(DE3) in which the recombinant protein, after solubilization with detergent and renaturation, showed both DNase and RNase activities. The assignment of His85 to the active site was further supported by evidence that the mutant protein Sr-nuclease (H85A), in which His85 was replaced by Ala, was not able to degrade DNA or RNA.


Subject(s)
Endonucleases/chemistry , Mucorales/enzymology , Amino Acid Sequence , Base Sequence , Cloning, Molecular , DNA, Complementary , Endonucleases/genetics , Endonucleases/metabolism , Molecular Sequence Data , Protein Conformation , Ribonucleases/metabolism , Sequence Homology, Amino Acid
5.
J Biol Chem ; 273(27): 17192-8, 1998 Jul 03.
Article in English | MEDLINE | ID: mdl-9642288

ABSTRACT

Porcine spleen DNase II, a lysosomal acid hydrolase, is a noncovalently linked alpha.beta heterodimer (Liao, T.-H. (1985) J. Biol. Chem. 260, 10708-10713). The alpha subunit, after disulfide cleavage, yields two chains, alpha1 and alpha2. The complete amino acid sequences of the alpha1, beta, and alpha2 chains were elucidated by protein sequencing, and the pairings of one interchain disulfide between alpha1 and alpha2 and of three intrachain disulfides in alpha2 were assigned. Six carbohydrate attachment sites, two in beta and four in alpha2, were detected by sugar analyses. The cDNA of DNase II was amplified using primers synthesized on the basis of the amino acid sequences determined. The amplified fragments shown to be a cDNA sequence of 1,292 bases. This cDNA sequence has an open reading frame encoding a 364-amino acid polypeptide containing a putative transmembrane peptide at the NH2-end, two small connecting peptides in the middle, and a peptide at the COOH terminus. These are evidently removed to form mature DNase II. Thus, all three chains in the sequence alpha1, beta, and alpha2 are coded by the same cDNA. When Chinese hamster ovary cells were transfected with a cloned plasmid with an inserted cDNA fragment encoding the entire reading frame, the expressed protein was released into the growth medium as an active form of DNase II.


Subject(s)
Endodeoxyribonucleases/genetics , Spleen/enzymology , Amino Acid Sequence , Animals , Apoptosis , Base Sequence , Binding Sites , CHO Cells , Carbohydrate Metabolism , Chromatography, Gel , Chromatography, High Pressure Liquid , Chromatography, Ion Exchange , Cloning, Molecular , Cricetinae , DNA, Complementary , Endodeoxyribonucleases/chemistry , Endodeoxyribonucleases/metabolism , Molecular Sequence Data , Protein Conformation , Swine
6.
J Biochem ; 123(4): 701-6, 1998 Apr.
Article in English | MEDLINE | ID: mdl-9538264

ABSTRACT

Cathepsin A was purified approximately 550-fold with an overall yield of 4% from bovine spleen crude extracts by successive chromatographies on DEAE-Sephadex A-50, phenyl-Toyopearl 650C, and Con A-agarose. PAGE of the purified enzyme without 2-mercaptoethanol revealed an apparent molecular size of 110 kDa, and SDS-PAGE with 2-mercaptoethanol gave two polypeptide bands corresponding to 32 and 25 kDa and without 2-mercaptoethanol a single polypeptide 52 kDa band. These results indicate that the enzyme has an (alpha beta)2 tetrameric structure in which the alpha (32 kDa) and beta (25 kDa) subunits are linked by disulfide bond(s). The enzyme exhibited peptidase activities, hydrolyzing various Z-dipeptides with optimum pHs between 5.0 and 5.8. The hydrolytic rate for Z-Phe-Ala was 15 times higher than that for Z-Glu-Tyr, the traditional cathepsin A substrate. The enzyme also catalyzed the hydrolysis of the C-terminal amino acids of RCM-RNase A and showed esterase activity toward BTEE at pH around 7.5. DFP and TPCK completely inhibited both peptidase and esterase activities, and [1,3-3H]DFP was bound to the alpha subunit. All these results support the fact that the enzyme is a serine carboxypeptidase. The N-terminal amino acid sequences of the alpha and beta subunits are highly homologous to those of the human protective protein in galactosialidosis, strongly supporting the identity between cathepsin A and the protective protein.


Subject(s)
Carboxypeptidases/metabolism , Spleen/enzymology , Amino Acid Sequence , Animals , Carboxypeptidases/antagonists & inhibitors , Carboxypeptidases/isolation & purification , Cathepsin A , Cattle , Chromatography, Affinity , Chromatography, Ion Exchange , Electrophoresis, Polyacrylamide Gel , Enzyme Inhibitors/pharmacology , Substrate Specificity
7.
Gene ; 206(2): 181-4, 1998 Jan 12.
Article in English | MEDLINE | ID: mdl-9469931

ABSTRACT

The bovine pancreatic (bp-) DNase I gene has been cloned from bp-cDNA and expressed in E. coli. A polynucleotide sequence of 1295 base pairs was deduced from clones of the cDNA. The sequence showed an open reading frame which can be translated as a 282-amino acid polypeptide, including a hydrophobic signal peptide and the polypeptide of bp-DNase I. An expression plasmid was constructed by inserting into the vector pET-15b, a cDNA fragment coding for bp-DNase I ligated with a hexanucleotide coding for Met-Ala at the 5'-end. The plasmid was transformed into E. coli strain DH5alpha and the active recombinant bovine (rb-) DNase I was produced after induction of protein synthesis. From the induced culture medium, rb-DNase I was purified by chromatography on a Mono Q column. The purified rb-DNase I showed a molecular mass of 29 kDa and had the same specific activity as bp-DNase I. The NH2-terminus of rb-DNase I was Ala, not Met, and at position 19, corresponding to the carbohydrate attachment site of bp-DNase I, Asn was not glycosylated.


Subject(s)
Cloning, Molecular , DNA, Complementary/biosynthesis , Deoxyribonuclease I/genetics , Deoxyribonuclease I/isolation & purification , Recombinant Proteins/isolation & purification , Sequence Analysis, DNA , Amino Acid Sequence , Animals , Base Sequence , Cattle , Deoxyribonuclease I/chemistry , Enzyme Activation , Escherichia coli/genetics , Molecular Sequence Data , Plasmids/chemical synthesis , Recombinant Proteins/chemistry
8.
Eur J Biochem ; 249(3): 786-91, 1997 Nov 01.
Article in English | MEDLINE | ID: mdl-9395327

ABSTRACT

DNase I of tilapia (Oreochromis mossambicus) was purified to homogeneity. Tilapia DNase I is most active at pH 8.5 with Mg2+ as activator. The Ca2+/Mg2+ pair has a synergistic effect on activation. The enzyme is readily inactivated by heating above 55 degrees C, but is not inactivated by trypsin or 2-mercaptoethanol under alkaline conditions, with or without CaCl2. Its isoelectric point is 6.0. The 258-amino-acid sequence of tilapia DNase I was derived from overlapping sequences of tryptic, chymotryptic and CNBr peptides. The purified enzyme has two variants differing by a single Lys-->Arg mutation at position 125. The polypeptide chain has one disulfide bridge and one carbohydrate side chain. By mass spectrometry, the purified enzyme shows many molecular mass forms differing by Lys/Arg substitution and sugar-chain length. The major form has a molecular mass of 30,914 Da. A 1061-bp nucleotide sequence for the cDNA of tilapia DNase I, obtained by gene cloning and DNA sequencing, contains an ORF coding for a putative 26-residue transmembrane peptide and the mature DNase I polypeptide.


Subject(s)
Deoxyribonuclease I/chemistry , Deoxyribonuclease I/isolation & purification , Tilapia/metabolism , Amino Acid Sequence , Animals , Base Sequence , Binding Sites , Cloning, Molecular , Conserved Sequence , Deoxyribonuclease I/genetics , Deoxyribonuclease I/metabolism , Electrophoresis, Polyacrylamide Gel , Enzyme Activation , Enzyme Stability , Glycosylation , Hydrogen-Ion Concentration , Kinetics , Molecular Sequence Data , Molecular Weight , Sequence Alignment , Sequence Analysis , Temperature
9.
J Formos Med Assoc ; 96(7): 481-7, 1997 Jul.
Article in English | MEDLINE | ID: mdl-9262051

ABSTRACT

DNases are DNA hydrolyzing enzymes. The well-characterized bovine pancreatic DNase I, the first DNase discovered, is a model DNase for studying the structure-function relationships of the DNase I type enzymes. The Epstein-Barr virus produces a DNase with an unknown biologic function other than degrading DNA, and this viral DNase has been used as an Epstein-Barr viral marker. Human DNase I exhibits polymorphism that can be used for forensic identification and for correlation with certain diseases. Variations in serum DNase activities have been implicated as the result of disease states and measurements of DNase activities are often used for diagnosis and prognosis. Recombinant human DNase I has been administered in cystic fibrosis patients to improve mucociliary clearance and pulmonary function. Thus, although the primary function of DNase is to degrade DNA, there are many reports of its clinical applications.


Subject(s)
Deoxyribonuclease I , Animals , Base Sequence , Deoxyribonuclease I/chemistry , Deoxyribonuclease I/physiology , Deoxyribonuclease I/therapeutic use , Humans
10.
J Protein Chem ; 16(2): 75-82, 1997 Feb.
Article in English | MEDLINE | ID: mdl-9112601

ABSTRACT

The activity of bovine DNase, but not that of porcine DNase, is inhibited by antisera against bovine DNase, and vice versa. Inhibition of DNase is found in the immunoglobulin G-containing fractions, as shown by ion exchange chromatography. Inactive DNase, carboxymethylated specifically at the active site His134, competes with active DNase and reverses the antisera inhibition of DNase, suggesting that the epitode responsible for inhibition does not contain the active site His134. Alignment of the sequences of DNase of these two species shows that the greatest variation occurs between residues 153 and 163, within which are three consecutive peptide bonds, Lys-Trp-His-Leu, that are readily cleaved by trypsin, chymotrypsin, or thermolysin. The 8-hr digest of DNase by each of these three proteases has lost the ability to reverse antisera inhibition. The degree of antisera inhibition varies with the metal ion used as the activator for DNase-catalyzed reactions. When Mn2+, Co2+, or Mg2+ plus Ca2+ are used as activators, inhibition is approximately 50%. When pBR322 plasmid is used as substrate, gel electrophoresis shows that the DNase-catalyzed DNA hydrolysis produces a significant amount of double-strand cuts with Mn2+, Co2+, or Mg2+ plus Ca2+ as activators and antisera inhibit DNase action only on double-strand cuts. With only Mg2+ as the activator no double-strand cuts are observed, either in the presence or absence of antisera, and the DNase activity is not significantly inhibited. We conclude that antisera inhibition is due to antibody binding of the DNase polypeptide chain within residues 153 and 163. These residues are not crucial for catalysis, but are required for DNA binding, which results in double-strand cuts.


Subject(s)
Deoxyribonucleases/antagonists & inhibitors , Immune Sera/pharmacology , Animals , Antibody Specificity , Binding Sites , Binding Sites, Antibody , Calcium/pharmacology , Cattle , Cobalt/pharmacology , DNA, Superhelical/metabolism , Deoxyribonucleases/chemistry , Deoxyribonucleases/metabolism , Enzyme-Linked Immunosorbent Assay , Epitopes/immunology , Histidine , Magnesium/pharmacology , Manganese/pharmacology , Metals/pharmacology , Models, Molecular , Swine
11.
Arch Biochem Biophys ; 334(1): 97-103, 1996 Oct 01.
Article in English | MEDLINE | ID: mdl-8837744

ABSTRACT

During purification of fungal deoxyribonuclease (DNase) from Syncephalastrum racemosum, a protein which was functionally unknown and persistently existed in the DNase-containing fractions through chromatography over DEAE-cellulose, hydroxylapatite, and phenyl-Sepharose was identified. The protein was finally separated from DNase after affinity chromatography on a cibacron blue-Sepharose column and purified to apparent homogeneity after gel chromatography on a Superdex 200 HR column. Ten tryptic peptides of this protein were isolated and sequenced. Searching in the sequence data bank with the aid of the computer program PC/Gene, we found that this protein was highly homologous to aspartic proteinases, such as pepsin and rhizopuspepsin. Because of its fungal origin and because the protein indeed showed catalytic cleavage on peptide bonds of bovine serum albumin, RNase, and carbonic anhydrase, we termed this protein syncephapepsin. The molecular weight of syncephapepsin is 38,000 daltons, based on gel filtration and sodium dodecyl sulfate-polyacrylamide electrophoresis.


Subject(s)
Aspartic Acid Endopeptidases/isolation & purification , Fungal Proteins/isolation & purification , Mucorales/chemistry , Mucorales/enzymology , Amino Acid Sequence , Animals , Aspartic Acid Endopeptidases/chemistry , Aspartic Acid Endopeptidases/genetics , Binding Sites/genetics , Carbonic Anhydrases/chemistry , Carbonic Anhydrases/genetics , Carbonic Anhydrases/metabolism , Cattle , Enzyme Stability , Fungal Proteins/chemistry , Fungal Proteins/genetics , In Vitro Techniques , Molecular Sequence Data , Molecular Weight , Mucorales/genetics , Peptide Fragments/chemistry , Peptide Fragments/genetics , Peptide Fragments/isolation & purification , Peptide Mapping , Sequence Homology, Amino Acid , Substrate Specificity
12.
Protein Sci ; 4(11): 2433-5, 1995 Nov.
Article in English | MEDLINE | ID: mdl-8563642

ABSTRACT

The essential histidine residue of carboxypeptidase Y (CPY) was modified by a site-specific reagent, a chloromethylketone derivative of benzyloxycarbonyl-L-phenylalanine. The single modified histidine residue was converted to N tau-carboxy-methyl histidine (cmHis) upon performic acid oxidation. A peptide containing cmHis was isolated from the tryptic-thermolytic digest. Based on the amino acid composition and sequence analysis, the peptide is shown to be Val-Phe-Asp-Gly-Gly-cmHis-MetO2-Val-Pro, which was derived from CPY cleaved by trypsin at Arg 391 and thermolysin at Phe 401, and thus His 397 was modified. This histidine residue has been implicated previously by X-ray analysis to participate in the charge-relay system of CPY.


Subject(s)
Carboxypeptidases/chemistry , Histidine/chemistry , Amino Acid Chloromethyl Ketones/chemistry , Amino Acid Sequence , Amino Acids/analysis , Binding Sites , Carboxypeptidases/metabolism , Cathepsin A , Chromatography, High Pressure Liquid , Formates , Histidine/metabolism , Indicators and Reagents , Molecular Sequence Data , Oxidation-Reduction , Peptide Fragments/analysis , Peptide Fragments/chemistry , Peptide Fragments/metabolism , Structure-Activity Relationship , Thermolysin/metabolism , Trypsin/metabolism
13.
Biochim Biophys Acta ; 1209(2): 209-14, 1994 Dec 14.
Article in English | MEDLINE | ID: mdl-7811692

ABSTRACT

Due to the differences in sample treatment, purified shrimp DNase migrates to different positions in sodium dodecyl sulfate (NaDod-SO4) polyacrylamide gel electrophoresis. DNase molecules migrating to some of these positions are enzymatically active as revealed by the DNase activity stain in situ. When the sample is not heated, DNase molecules (Form I) migrate to a position corresponding to an apparent Mr of 22 000 and are stain DNase-active. When the sample is heated with NaDod-SO4, DNase molecules (Form II) migrate to the apparent Mr of 39 000 position and are also DNase-active. In contrast, when the sample is heated without NaDod-SO4, DNase molecules (Form II') migrate to the same position as Form II but are DNase-inactive. When the sample is heated in the presence of beta-mercaptoethanol (with or without NaDod-SO4), the inactive Form III is generated. Form III must be the fully extended polypeptide because its apparent Mr is very close to the true Mr of DNase. These treated samples were also analyzed for DNase activity by diluting DNase-NaDod-SO4 into the DNase (hyperchromicity) assay solution. The results are consistent in that only Forms I and II are DNase-active. However, Form I differs from Form II in the time required for expression of DNase activity. After dilution of NaDod-SO4. Form II requires approx. 60 min to attain full activity while Form I is active immediately. Form II itself is inactive. The activity found at the Mr 39 000 position is due to conversion of Form II to the active Form I, as revealed by two-dimensional NaDod-SO4 gel electrophoresis. The sample heated without NaDod-SO4 soon contains active Form II, indicating that Form II is an intermediate during the production of Form II'. When Form II' is heated with NaDod-SO4, it does not refold back to the native state through Form II, suggesting that Form II' is irreversibly denatured. Thus, the anomalous behaviors of shrimp DNase in NaDod-SO4 gel electrophoresis have been utilized to study, in the presence and absence of NaDod-SO4, the thermal unfolding, as well as the refolding to the active enzyme during cooling and NaDod-SO4 removal.


Subject(s)
Deoxyribonucleases/antagonists & inhibitors , Hot Temperature , Sodium Dodecyl Sulfate , Animals , Decapoda , Deoxyribonucleases/chemistry , Electrophoresis, Polyacrylamide Gel , Enzyme Activation , Protein Conformation
14.
J Biomed Sci ; 1(2): 105-118, 1994 Mar.
Article in English | MEDLINE | ID: mdl-11725013

ABSTRACT

T cell clones specific for hepatitis B core (HBcAg) and e (HBeAg) antigens of hepatitis B virus (HBV) were generated from liver infiltrates of HBeAg-positive patients. Analyzed with a panel of overlapping synthetic peptides spanning the complete sequences of HBcAg and HBeAg, eight clones responded specifically to the e2 peptide (PAYRPPNAPIL; amino acid residues 130-140 of HBcAg and HBeAg), which was doubly restricted by class I and II molecules. A preferential usage of the T cell receptor (TCR) alpha chain variable (V(alpha)) gene was found: V(alpha)12.1 for five HLA-Cw9(3)-restricted cytotoxic T lymphocyte (CTL) clones, and V(alpha)7.1 for three other HLA-DRw52-restricted type 1 helper T cell (Th1) clones. Although heterogeneous in the usage of TCR alpha chain joining region (J(alpha)) segments, their junctional-region sequences revealed conserved hydrophilic serine residues in seven of the eight e2-specific T cell clones. Single alanine substitution of the centrally located and the only hydrophilic asparagine residue of e2 peptide abrogated T cell responsiveness. The nonstimulatory e2 analogue could competitively inhibit e2-specific responses. These results demonstrate that both CTL and Th1 clones recognizing a determinant of HBcAg and HBeAg are present in the liver of chronic hepatitis B patients. The preferential V(alpha) gene usage and the expression of conserved residues in junctional-region sequences of TCRalpha chains by viral-peptide-specific, intrahepatic T cells may provide a T cell mechanism of HBV immunopathogenesis. Copyright 1994 S. Karger AG, Basel

15.
Biotechnol Appl Biochem ; 19(1): 129-40, 1994 02.
Article in English | MEDLINE | ID: mdl-8136077

ABSTRACT

DNAase F is a minor isoform of bovine pancreatic DNAase which can be separated from the other isoforms (DNAases A, B, C and D) present in a commercial preparation by a preparative isoelectric-focusing cell (Rotofor; Bio-Rad). The ampholytes and other contaminating proteins present in DNAase F preparations can be removed by chromatography on an affinity column (Cibacron Blue 3GA-agarose) and a hydrophobic-interaction column (phenyl-Sepharose CL-4B). The complete separation of DNAase F from the other isoforms is demonstrated on a thin-layer isoelectric-focusing gel, DNAase F being the most basic (pI 5.68). A procedure is described for tryptic peptide mapping by h.p.l.c. requiring only picomolar amounts of DNAase F protein. The DNAase F map shows two peptide peaks not present in the DNAase A map, and the DNAase F map does not have a peak at the position where a C-terminal peptide of DNAase A is normally eluted. The amino acid compositions and sequences for the two new peptides suggest that Gly240 in DNAase A is changed to Arg240 in DNAase F.


Subject(s)
Deoxyribonucleases/chemistry , Pancreas/enzymology , Amino Acid Sequence , Animals , Arginine/chemistry , Cattle , Chromatography, High Pressure Liquid , Deoxyribonucleases/isolation & purification , Deoxyribonucleases/metabolism , Glycine/chemistry , Isoelectric Focusing , Isoenzymes , Molecular Sequence Data , Restriction Mapping
16.
Arch Biochem Biophys ; 303(1): 51-6, 1993 May 15.
Article in English | MEDLINE | ID: mdl-8489265

ABSTRACT

Among the isolated fungal species of soil, one filamentous fungus, Syncephalastrum racemosum, produces a relatively large amount of DNase. This enzyme has been purified to apparent homogeneity by column chromatography on DEAE-cellulose, hydroxylapatite, phenyl-Sepharose CL-4B, and Sephadex G-100. The active enzyme requires divalent metal ions and has an optimum pH of 7.0 with Mg2+ and 7.2 with Mn2+. This enzyme is an acidic glycoprotein with a pI 5.0 and is relatively unstable at low concentrations. The M(r) of the enzyme is 56,000 during gel filtration under nondenaturing conditions but is 28,000 during polyacrylamide gel electrophoresis in sodium dodecyl sulfate. These results suggest a structure consisting of two subunits. The subunits of the holoenzyme can be cross-linked with glutaraldehyde. The yield of N-terminal phenylthiohydantoin-alanine from the holoenzyme is 140% and that of one peptide (D-Y-V-S-S-G-Y-D-R), obtained from the tryptic digest is 160%, indicating that the native enzyme is composed of two identical subunits and probably has two active domains. Fungal DNase can be inactivated by Cu(2+)-iodoacetate under conditions that inactivate bovine pancreatic DNase. The specific activity (units/mg of protein) of fungal DNase is 6.5 times that of bovine DNase. The amino acid content of fungal DNase, relative to bovine DNase, is higher in Gly and lower in Ser and Val. The fungal N-terminal 40-residue sequence shows a high degree of homology with a consensus sequence derived from DNase of three mammalian species.


Subject(s)
Deoxyribonucleases/metabolism , Fungi/enzymology , Amino Acid Sequence , Amino Acids/analysis , Chromatography , Deoxyribonucleases/antagonists & inhibitors , Deoxyribonucleases/chemistry , Fungal Proteins/chemistry , Glutaral , Glycoproteins/chemistry , Iodoacetates/pharmacology , Iodoacetic Acid , Molecular Sequence Data , Molecular Structure , Soil Microbiology , Spectrum Analysis
18.
Biochim Biophys Acta ; 1079(3): 335-42, 1991 Sep 20.
Article in English | MEDLINE | ID: mdl-1911859

ABSTRACT

The inactivation of bovine pancreatic DNase by phenylglyoxal exhibits pseudo-first-order and pH-dependent kinetics. At 13.2 mM phenylglyoxal and 25 degrees C, the half-life of DNase is 8 min at pH 8.0 and 2 h at pH 6.7. Calcium, which binds to DNase, does not protect against or facilitate the reaction of DNase with the reagent. However, due to DNA-DNase interaction the half-life of DNase is approx. doubled in the presence of 0.2% (w/v) DNA. Modified DNase has apparently lost its ability to interact with DNA since it elutes behind native DNase on a Sepharose 4B column developed with buffer containing DNA. Complete inactivation of the enzyme is achieved when approx. 4 of the 12 arginines in DNase are modified at pH 6.7. The identification of the radioactive peptides, isolated from the proteolytic digest of [7-14C]phenylglyoxal-treated DNase, showed the four modified arginines to be Arg-9, -27, -30 and -41. Based on the data from dual labeling experiments using a mixture of DNase modified (without DNA protection) by radioactive phenylglyoxal and DNase modified (with DNA protection) by cold phenylglyoxal, it is concluded that Arg-27 and Arg-30 are essentially un-protected by DNA while Arg-9 and Arg-41 are protected part of the time. This conclusion agrees with the proposed substrate binding site in the three-dimensional structure of DNase (Suck, D., Lahm, A. and Oefner, C. (1988) Nature 332, 464-468) where Arg-9 and Arg-41 are among the residues responsible for interaction with DNA.


Subject(s)
Arginine , Deoxyribonucleases/antagonists & inhibitors , Pancreas/enzymology , Phenylglyoxal/pharmacology , Amino Acid Sequence , Animals , Binding Sites , Cattle , Hydrogen-Ion Concentration , Kinetics , Molecular Sequence Data , Phenylglyoxal/metabolism
19.
Biochim Biophys Acta ; 1036(2): 95-100, 1990 Nov 09.
Article in English | MEDLINE | ID: mdl-2171660

ABSTRACT

Deoxyribonuclease (DNase), isolated from shrimp hepatopancreas by chromatography on DEAE-cellulose, Sephadex G-100, phenyl-Sepharose and hydroxyapatite, is homogeneous as shown by sodium dodecyl sulfate polyacrylamide gel electrophoresis. The metal ion requirements and the pH-activity optima of shrimp DNase are very similar to those of bovine DNase. Both shrimp and bovine DNases are sensitive to iodoacetate inactivation under the same condition. The active shrimp DNase molecule is a monomer of Mr 44,000, approx. 13,000 larger than the Mr of bovine DNase. Shrimp DNase is rich in glutamic acid, glycine and half-cystine. The single polypeptide chain of shrimp DNase is highly cross-linked by 18 disulfides as compared to only two disulfides in bovine DNase. In contrast to bovine DNase, shrimp DNase is not a glycoprotein, is devoid of the activity against p-nitrophenyl phenylphosphonate (a synthetic substrate for bovine DNase), and resists to inactivation by beta-mercaptoethanol or trypsin under the Ca2(+)-free condition at pH 8. Shrimp DNase shows an isoelectric point of 4.06 on the thin-layer isoelectric focusing and rapidly loses its activity at pH below 5.


Subject(s)
Decapoda/enzymology , Deoxyribonucleases/isolation & purification , Pancreas/enzymology , Amino Acids/analysis , Animals , Cations, Divalent , Cattle , Chromatography , Chromatography, Gel , Chromatography, Ion Exchange , Deoxyribonucleases/metabolism , Digestive System/enzymology , Durapatite , Hydroxyapatites , Kinetics
20.
Arch Biochem Biophys ; 280(2): 320-4, 1990 Aug 01.
Article in English | MEDLINE | ID: mdl-2369124

ABSTRACT

DNase II, bound to the lysosomal membrane of porcine spleen, can be extracted from the membrane with 0.4 M NaCl. Reassociation of DNase II with the salt-extracted lysosomal membrane is readily accomplished in 0.01 M sodium acetate (pH 4.5). The reassociable amount of DNase II is approximately equal to the extractable amount. The capacity of the lysosomal membrane to bind DNase II is unaffected by the subtilisin treatment of the membrane. Phosphatidyl serine can bind DNase II as well, but with a much higher capacity. The erythrocyte plasma membrane on the other hand binds only about 20% of DNase II bound to the lysosomal membrane. The DNase II activity can be eluted from a column of the lysosomal membrane entrapped in 2% agarose and the elution pattern is very similar to that of CM-cellulose chromatography of DNase II, suggesting that electrostatic interactions may play an important role in the binding. The pH-reassociation profile is bell-shaped and is similar to the pH-activity profile of DNase II, having a maximum near pH 5. Under the nondenaturing condition, the dissociated alpha and beta subunits of DNase II cannot be reassociated to regain the enzymatic activity with or without the lysosomal membrane.


Subject(s)
Endodeoxyribonucleases/isolation & purification , Intracellular Membranes/metabolism , Lysosomes/metabolism , Spleen/enzymology , Animals , Binding Sites , Endodeoxyribonucleases/metabolism , Macromolecular Substances , Protein Denaturation , Spleen/ultrastructure , Swine
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