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1.
Syst Biol (Stevenage) ; 153(5): 332-4, 2006 Sep.
Article in English | MEDLINE | ID: mdl-16986310

ABSTRACT

Glycolytic flux may increase over 100 times in skeletal muscle during rest-to-work transition, whereas glycolytic metabolite concentrations remain relatively constant. This constancy cannot be explained by an identical direct activation of all glycolytic enzymes because the concentrations of ATP, ADP, AMP, P(i), NADH and NAD+, modulators of the activity of different glycolytic enzymes, change. It is demonstrated in the present in silico study that a perfect homeostasis of glycolytic metabolite concentrations can be achieved if glycolysis is divided into appropriate blocks of enzymes that are directly activated to a different extent in order to compensate the effect of the modulators.


Subject(s)
Adenosine Diphosphate/metabolism , Adenosine Triphosphate/metabolism , Glycolysis/physiology , Models, Biological , Muscle, Skeletal/physiology , NAD/metabolism , Algorithms , Computer Simulation , Energy Metabolism/physiology , Feedback/physiology , Glucose/metabolism , Humans , Kinetics , Muscles , Signal Transduction/physiology
2.
J Chem Phys ; 124(5): 054709, 2006 Feb 07.
Article in English | MEDLINE | ID: mdl-16468903

ABSTRACT

A cluster model is proposed to describe the excitations in solid tungsten oxide. The density-functional theory approach is used to calculate the ground-state electronic structure of the model cluster and its optimum geometry; subsequently, time-dependent density-functional theory calculations are performed to obtain the oscillator strengths and energies of the excited states. The results are reported both for the electrically neutral cluster and for the cluster with an extra electron (mimicking the effect of electron injection from the cathode). They correctly locate the electrochemically active transition. The corresponding wave functions are delocalized, suggesting that electron localization at one tungsten center is rather unlikely, thereby shedding doubt as to the validity of the polaron model. Local lattice distortions presumably created at the stage of sample preparation are found to affect the excitation energies to a considerable extent, which explains the experimentally observable large width of optical absorption responsible for electrochromism.

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