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1.
Biomed Phys Eng Express ; 7(5)2021 08 27.
Article in English | MEDLINE | ID: mdl-34256366

ABSTRACT

This work proposes a pixel-classification approach for vessel segmentation in x-ray angiograms. The proposal uses textural features such as anisotropic diffusion, features based on the Hessian matrix, mathematical morphology and statistics. These features are extracted from the neighborhood of each pixel. The approach also uses the ELEMENT methodology, which consists of creating a pixel-classification controlled by region-growing where the result of the classification affects further classifications of pixels. The Random Forests classifier is used to predict whether the pixel belongs to the vessel structure. The approach achieved the best accuracy in the literature (95.48%) outperforming unsupervised state-of-the-art approaches.


Subject(s)
Image Processing, Computer-Assisted , Machine Learning , Heart , X-Rays
2.
Clin Exp Allergy ; 47(9): 1214-1222, 2017 Sep.
Article in English | MEDLINE | ID: mdl-28471517

ABSTRACT

BACKGROUND: The Duffy antigen receptor for chemokines (DARC) is an atypical receptor that regulates pro-inflammatory cytokines. However, the role of DARC in asthma pathophysiology is unknown. OBJECTIVE: To determine the role of DARC in allergic airways disease in mice, and the association between DARC single nucleotide polymorphisms (SNPs) and clinical outcomes in patients with asthma. METHODS: Mice with targeted disruption of the Darc gene (Darc∆E2 ) or WT mice were challenged over 3 weeks with house dust mite (HDM) antigen. Allergic airways disease was assessed 24 hours and 7 days following the final challenge. Additionally, associations between DARC SNPs and clinical outcomes were analysed in a cohort of poorly controlled asthmatics. RESULTS: Total airway inflammation following HDM did not differ between Darc∆E2 and WT mice. At 24 hours, Darc∆E2 mice had increased airway hyperresponsiveness; however, at 7 days airway hyperresponsiveness had completely resolved in Darc∆E2 but persisted in WT mice. In poorly controlled asthmatics, DARC SNPs were associated with worse asthma control at randomization and subsequent increased risk of healthcare utilization (odds ratio 3.13(1.37-7.27), P=.0062). CONCLUSIONS AND CLINICAL RELEVANCE: Our animal model and human patient data suggest a novel role for DARC in the temporal regulation in asthma pathophysiology and symptoms.


Subject(s)
Asthma , Chemokines , Duffy Blood-Group System , Receptors, Cell Surface , Animals , Female , Humans , Male , Mice , Antigens, Dermatophagoides/immunology , Asthma/diagnosis , Asthma/etiology , Asthma/metabolism , Chemokines/metabolism , Disease Models, Animal , Disease Susceptibility , Duffy Blood-Group System/genetics , Duffy Blood-Group System/metabolism , Gene Expression , Genetic Loci , Leukocytes/immunology , Leukocytes/metabolism , Leukocytes/pathology , Mice, Knockout , Neutrophils/immunology , Neutrophils/metabolism , Neutrophils/pathology , Patient Acceptance of Health Care , Patient Outcome Assessment , Phenotype , Polymorphism, Single Nucleotide , Prognosis , Receptors, Cell Surface/genetics , Receptors, Cell Surface/metabolism , Respiratory Hypersensitivity/diagnosis , Respiratory Hypersensitivity/etiology , Respiratory Hypersensitivity/metabolism , Respiratory Mucosa/immunology , Respiratory Mucosa/metabolism , Severity of Illness Index
4.
Chemosphere ; 168: 903-907, 2017 Feb.
Article in English | MEDLINE | ID: mdl-27823782

ABSTRACT

This work reports a new analytical approach for monitoring the enantiomeric ratios of styrene glycol (SG), encountered during the manufacture of plastics, by chiral liquid chromatography and the application as a biomarker for exposure to styrene. The isomers were separated using an AGP column running in the reverse phase and isocratic mode with a mobile phase consisting of 20 mM phosphate buffer saline (pH 4.15) and methanol at a flow rate of 0.8 mL/min. Photometric, polarimetric, and circular dichroism detectors were employed. The chromatographic enantioselective resolution (Rs) and selectivity index (α) values were determined to be 1.60 and 1.48 (by photometric detection), respectively. Calibration curves used for the quantification of the SG enantiomers were linear with a correlation coefficient >0.99; the detection limits were in the range of 0.03-0.16 µg, depending on the detector used. Recovery assays on synthetic samples (in triplicate) covering the full range of enantiomeric fractions (0.0-1.0) show accuracy values below 5% for the enantiomeric fraction (EF) in every case. An alternative method based on the measurement of anisotropy factors for the determination of EF, which is faster and does not require the separation of enantiomers, has also been developed. The enantiomeric excess of the toxicant biomarker styrene glycol has been determined. No previous direct enantioselective determination of styrene glycol was published.


Subject(s)
Biomarkers/analysis , Ethylene Glycols/analysis , Ethylene Glycols/chemistry , Occupational Exposure/analysis , Styrene , Calibration , Chromatography, High Pressure Liquid/methods , Circular Dichroism , Limit of Detection , Stereoisomerism
5.
J Fish Dis ; 39(2): 163-74, 2016 Feb.
Article in English | MEDLINE | ID: mdl-25643807

ABSTRACT

Phagocytosis is an important function of both invertebrate and vertebrate blood cells. In this study, the phagocytic activity of haemocyte subpopulations of penaeid shrimp, Litopenaeus vannamei, (Boone), against pathogenic and non-pathogenic particles was investigated in vitro. The haemocytes of penaeid shrimp were firstly separated by centrifugation on a continuous density gradient of iodixanol into four fractions with five subpopulations (sub), of which sub 1 (hyalinocytes) and sub 4 (semi-granulocytes) have the main function in phagocytosis of both pathogenic and non-pathogenic bacteria as well as fluorescent polystyrene beads. It was found that these haemocyte subpopulations engulfed virulent Vibrio campbellii and Vibrio harveyi at a higher rate than non-virulent Escherichia coli and polystyrene beads. When these bacteria were mixed with shrimp haemocyte subpopulations and incubated for 180 min, the percentage of viable intracellular V. campbellii (25.5 ± 6.0%) recovered was significantly higher than the percentage recovered from V. harveyi (13.5 ± 1.1%). No viable intracellular E. coli was observed in this study. In contrast to V. harveyi and E. coli, V. campbellii containing endosomes did not acidify in time. Incubation of haemocyte subpopulations with the most virulent V. campbellii strain resulted in a significant drop in haemocyte viability (41.4 ± 6.3% in sub 1 and 30.2 ± 15.1% in sub 4) after 180 min post-inoculation in comparison with the less virulent V. harveyi (84.1 ± 5.6% in sub 1 and 83.4 ± 4.1% in sub 4) and non-virulent E. coli (92.7 ± 2.8% in sub 1 and 92.3 ± 5.6% in sub 4) and polystyrene beads (91.9 ± 1.6% in sub 1 and 84.4 ± 3.4% in sub 4). These findings may be a valuable tool for monitoring shrimp health and immunological studies.


Subject(s)
Escherichia coli/physiology , Penaeidae/immunology , Penaeidae/virology , Vibrio/physiology , Animals , Cell Survival , Hemocytes/immunology , Hemocytes/physiology , Hemocytes/virology , Hydrogen-Ion Concentration , Phagocytosis , Polystyrenes/metabolism , Specific Pathogen-Free Organisms
6.
Pharmacogenomics J ; 16(2): 151-7, 2016 Apr.
Article in English | MEDLINE | ID: mdl-26031901

ABSTRACT

Heterogeneous therapeutic responses to leukotriene modifiers (LTMs) are likely due to variation in patient genetics. Although prior candidate gene studies implicated multiple pharmacogenetic loci, to date, no genome-wide association study (GWAS) of LTM response was reported. In this study, DNA and phenotypic information from two placebo-controlled trials (total N=526) of zileuton response were interrogated. Using a gene-environment (G × E) GWAS model, we evaluated 12-week change in forced expiratory volume in 1 second (ΔFEV1) following LTM treatment. The top 50 single-nucleotide polymorphism associations were replicated in an independent zileuton treatment cohort, and two additional cohorts of montelukast response. In a combined analysis (discovery+replication), rs12436663 in MRPP3 achieved genome-wide significance (P=6.28 × 10(-08)); homozygous rs12436663 carriers showed a significant reduction in mean ΔFEV1 following zileuton treatment. In addition, rs517020 in GLT1D1 was associated with worsening responses to both montelukast and zileuton (combined P=1.25 × 10(-07)). These findings implicate previously unreported loci in determining therapeutic responsiveness to LTMs.


Subject(s)
Anti-Asthmatic Agents/therapeutic use , Asthma/drug therapy , Genetic Loci , Leukotrienes/metabolism , Acetates/therapeutic use , Asthma/genetics , Asthma/metabolism , Cohort Studies , Cyclopropanes , Gene-Environment Interaction , Genome-Wide Association Study , Genotype , Humans , Hydroxyurea/analogs & derivatives , Hydroxyurea/therapeutic use , Phenotype , Polymorphism, Single Nucleotide , Quinolines/therapeutic use , Sulfides
7.
J Nanosci Nanotechnol ; 15(3): 2495-500, 2015 Mar.
Article in English | MEDLINE | ID: mdl-26413695

ABSTRACT

This work investigates the modification, resulting from fs-laser irradiation (150 fs, 775 nm and 1 kHz), on the structure and surface morphology of hydrogenated amorphous silicon (a-Si:H) thin films. The sample morphology was studied by performing a statistical analyzes of atomic force microscopy images, using a specially developed software that identifies and characterizes the domains (spikes) produced by the laser irradiation. For a fluence of 3.1 MJ/m2, we observed formation of spikes with smaller average height distribution, centered at around 15 nm, while for fluencies higher than 3.7 MJ/m2 aggregation of the produced spikes dominates the sample morphology. On the other hand, Raman spectroscopy revealed that a higher crystalline fraction (73%) is obtained for higher fluences (> 3.1 MJ/m2), which is accompanied by a decrease in the size of the produced crystals. Therefore, such results indicate that there is a trade-off between the spike distribution, crystallization fraction and size of the nanocrystals attained by laser irradiation, which has to be taken into account when using such approach for the development of devices.

8.
Clin Exp Allergy ; 45(1): 192-9, 2015 Jan.
Article in English | MEDLINE | ID: mdl-25059756

ABSTRACT

BACKGROUND: Allergic rhinitis is a disease with a high global disease burden, but risk factors that contribute to this condition are not well understood. OBJECTIVE: To assess the prevalence and risk factors of allergic rhinitis in two Peruvian populations with disparate degrees of urbanization. METHODS: We conducted a population-based, cross-sectional study on 1441 children aged 13-15 years at enrollment (mean age 14.9 years, 51% boys) to investigate the prevalence of allergic disease. We used a standardized, Spanish validated questionnaire to determine the prevalence of allergic rhinitis and asked about sociodemographics and family history of allergies. Children also underwent spirometry, exhaled nitric oxide, allergy skin testing to 10 common household allergens and provided a blood sample for measurement of 25OH vitamin D and total serum IgE. RESULTS: Overall prevalence of allergic rhinitis was 18% (95% CI 16% to 20%). When stratified by site, the prevalence of allergic rhinitis was 23% Lima vs. 13% in Tumbes (P < 0.001); however, this difference was no longer significant after controlling for subject-specific factors (P = 0.95). There was a strong association with other allergic diseases: 53% of children with asthma had allergic rhinitis vs. 15% in those without asthma (P < 0.001) and 42% of children with eczema vs. 17% of those without eczema (P < 0.001). Important risk factors for allergic rhinitis were parental rhinitis (adjusted OR = 3.0, 95% CI 1.9-4.7 for 1 parent and adjusted OR = 4.4, 95% CI 1.5-13.7 for 2 parents); allergic sensitization to common household aeroallergens (1.6, 1.1-2.3); being overweight (1.5, 1.0-2.3); exhaled nitric oxide ≥ 20 ppb (1.9, 1.3-2.7); and total serum IgE ≥ 95th percentile (2.4, 1.2-4.8). Population attributable risk of important factors for allergic rhinitis were 25% for high exhaled nitric oxide, 22% for allergic sensitization to common household aeroallergens, 22% for paternal rhinitis, 10% for being overweight and 7% for an elevated total serum IgE. CONCLUSION AND CLINICAL RELEVANCE: Allergic rhinitis was prevalent in both settings, and important risk factors include elevated exhaled nitric oxide, allergic sensitization to common household aeroallergens, parental rhinitis, being overweight and high total serum IgE. When considering subject-specific factors, the difference in prevalence between the urban and rural settings became non-important.


Subject(s)
Environmental Exposure/adverse effects , Rhinitis, Allergic/epidemiology , Rural Population , Surveys and Questionnaires , Urban Population , Adolescent , Cross-Sectional Studies , Female , Humans , Male , Peru/epidemiology , Prevalence , Rhinitis, Allergic/etiology , Risk Factors
9.
Clin Exp Allergy ; 45(1): 273-82, 2015 Jan.
Article in English | MEDLINE | ID: mdl-24666565

ABSTRACT

BACKGROUND: Vitamin D deficiency may be associated with an increased risk of asthma. OBJECTIVE: We studied the association between 25-hydroxy (25-OH) vitamin D deficiency and asthma prevalence in two Peruvian populations close to the equator but with disparate degrees of urbanization. METHODS: We conducted a population-based study in 1441 children in two communities in Peru, of which 1134 (79%) provided a blood sample for 25-OH vitamin D analysis. RESULTS: In these 1134 children, mean age was 14.8 years; 52% were boys; asthma and atopy prevalence was 12% in Lima vs. 3% in Tumbes (P < 0.001) and 59% in Lima vs. 41% in Tumbes (P < 0.001), respectively; and, mean 25-OH vitamin D level was 20.8 ng/mL in Lima vs. 30.1 ng/mL in Tumbes (P < 0.001). Prevalence of 25-OH vitamin D deficiency (< 20 ng/mL) was 47% in Lima vs. 7% in Tumbes (P < 0.001). In multi-variable logistic regression, we found that lower 25-OH vitamin D levels were associated with an increased odds of asthma (OR = 1.7 per each 10 ng/mL decrease in 25-OH vitamin D levels, 95% CI 1.2-2.6; P < 0.01). In stratified analyses, the association between lower 25-OH vitamin D levels and asthma was limited to children with atopy (OR = 2.2, 95% CI 1.3-3.6) and not in those without atopy (OR = 0.9, 95% CI 0.5-2.0). We did not find associations between 25-OH vitamin D levels and other clinical biomarkers for asthma, including exhaled nitric oxide, total serum IgE and pulmonary function. CONCLUSION AND CLINICAL RELEVANCE: Both asthma and 25-OH vitamin D deficiency were common among children living in Lima (latitude = 12.0 °S) but not among those in Tumbes (3.6 °S). The relationship between 25-OH vitamin D deficiency and asthma was similar in both sites and was limited among children with atopy. Future supplementation trials may need to consider stratification by atopy at the time of design.


Subject(s)
Asthma/blood , Asthma/epidemiology , Calcifediol/blood , Vitamin D Deficiency/blood , Vitamin D Deficiency/epidemiology , Adolescent , Asthma/complications , Female , Humans , Male , Peru/epidemiology , Vitamin D Deficiency/complications
10.
Pharmacogenomics J ; 14(1): 41-7, 2014 Feb.
Article in English | MEDLINE | ID: mdl-23508266

ABSTRACT

Reversibility of airway obstruction in response to ß2-agonists is highly variable among asthmatics, which is partially attributed to genetic factors. In a genome-wide association study of acute bronchodilator response (BDR) to inhaled albuterol, 534 290 single-nucleotide polymorphisms (SNPs) were tested in 403 white trios from the Childhood Asthma Management Program using five statistical models to determine the most robust genetic associations. The primary replication phase included 1397 polymorphisms in three asthma trials (pooled n=764). The second replication phase tested 13 SNPs in three additional asthma populations (n=241, n=215 and n=592). An intergenic SNP on chromosome 10, rs11252394, proximal to several excellent biological candidates, significantly replicated (P=1.98 × 10(-7)) in the primary replication trials. An intronic SNP (rs6988229) in the collagen (COL22A1) locus also provided strong replication signals (P=8.51 × 10(-6)). This study applied a robust approach for testing the genetic basis of BDR and identified novel loci associated with this drug response in asthmatics.


Subject(s)
Adrenergic beta-2 Receptor Agonists/therapeutic use , Asthma/drug therapy , Bronchodilator Agents/therapeutic use , Polymorphism, Single Nucleotide , Quantitative Trait Loci , Adolescent , Adrenergic beta-2 Receptor Agonists/administration & dosage , Adult , Aged , Aged, 80 and over , Asthma/genetics , Bronchodilator Agents/administration & dosage , Child , Child, Preschool , Clinical Trials as Topic , Female , Genome-Wide Association Study , Humans , Male , Middle Aged , Treatment Outcome , Young Adult
11.
Clin Exp Allergy ; 43(5): 512-20, 2013 May.
Article in English | MEDLINE | ID: mdl-23600541

ABSTRACT

BACKGROUND: Identification of risk factors for reduced asthma control could improve the understanding and treatment of asthma. A promoter polymorphism in the 5-lipoxygenase gene affects gene expression and response to asthma therapy, but its impact on disease control remains unclear. OBJECTIVE: We sought to determine if the ALOX5 promoter SP1 tandem repeat polymorphism was associated with changes in cysteinyl leukotriene production, lung function, airway inflammation and asthma control score. METHODS: We analysed 270 children, 6- to 17-years old, with poorly controlled asthma enrolled in a 6-month clinical trial (NCT00604851). In secondary analysis, we associated the ALOX5 promoter SP1 tandem repeat polymorphism genotype (rs59439148) with asthma outcomes using both additive and recessive genetic models. We evaluated FEV1 percent predicted, symptom control, exhaled nitric oxide and urinary LTE4 levels. RESULTS: Of all children, 14.8% (40/270) (and 28% (38/135) of African Americans) carried two non-5-repeat variant alleles of rs59439148. Children who were homozygous for variant alleles had significantly higher urinary LTE4 levels (38 vs. 30 nmol/mol creatinine, P = 0.0134), significantly worse FEV1% predicted (84 vs. 91, P = 0.017) and a trend towards worse asthma control. FEV1% predicted values were significantly negatively correlated with urinary LTE4 (r = -0.192, P = 0.009). CONCLUSION AND CLINICAL RELEVANCE: Carrying two copies of a minor variant ALOX5 promoter SP1 tandem repeat allele contributes to increased cysLT exposure as determined by urinary LTE4 levels, reduced lung function and potentially worse asthma control. ALOX5 promoter SP1 tandem repeat genotype may be a risk factor for worse asthma outcomes.


Subject(s)
Arachidonate 5-Lipoxygenase/genetics , Asthma/genetics , Asthma/metabolism , Leukotrienes/biosynthesis , Polymorphism, Genetic , Adolescent , Alleles , Asthma/physiopathology , Binding Sites , Child , Female , Gene Frequency , Genotype , Humans , Leukotriene E4/urine , Leukotrienes/urine , Male , Promoter Regions, Genetic , Respiratory Function Tests , Sp1 Transcription Factor/metabolism
12.
J Fish Dis ; 36(10): 841-51, 2013 Oct.
Article in English | MEDLINE | ID: mdl-23384051

ABSTRACT

Up to now, only a few brief procedures for purifying white spot syndrome virus (WSSV) have been described. They were mainly based on sucrose, NaBr and CsCl density gradient centrifugation. This work describes for the first time the purification of WSSV through iodixanol density gradients, using virus isolated from infected tissues and haemolymph of Penaeus vannamei (Boone). The purification from tissues included a concentration step by centrifugation (2.5 h at 60,000 g) onto a 50% iodixanol cushion and a purification step by centrifugation (3 h at 80,000 g) through a discontinuous iodixanol gradient (phosphate-buffered saline, 5%, 10%, 15% and 20%). The purification from infected haemolymph enclosed a dialysis step with a membrane of 1,000 kDa (18 h) and a purification step through the earlier iodixanol gradient. The gradients were collected in fractions and analysed. The number of particles, infectivity titre (in vivo), total protein and viral protein content were evaluated. The purification from infected tissues gave WSSV suspensions with a very high infectivity and an acceptable purity, while virus purified from haemolymph had a high infectivity and a very high purity. Additionally, it was observed that WSSV has an unusually low buoyant density and that it is very sensitive to high external pressures.


Subject(s)
Centrifugation, Density Gradient , Penaeidae/virology , Triiodobenzoic Acids/chemistry , White spot syndrome virus 1/isolation & purification , Animals , Hemolymph/virology , Viral Load , Viral Proteins/analysis , White spot syndrome virus 1/physiology
13.
Pharmacogenomics J ; 13(4): 306-11, 2013 Aug.
Article in English | MEDLINE | ID: mdl-22641026

ABSTRACT

Inhaled corticosteroids (ICS) are the most commonly used controller medications prescribed for asthma. Two single-nucleotide polymorphisms (SNPs), rs1876828 in corticotrophin releasing hormone receptor 1 and rs37973 in GLCCI1, have previously been associated with corticosteroid efficacy. We studied data from four existing clinical trials of asthmatics, who received ICS and had lung function measured by forced expiratory volume in 1 s (FEV1) before and after the period of such treatment. We combined the two SNPs rs37973 and rs1876828 into a predictive test of FEV1 change using a Bayesian model, which identified patients with good or poor steroid response (highest or lowest quartile, respectively) with predictive performance of 65.7% (P=0.039 vs random) area under the receiver-operator characteristic curve in the training population and 65.9% (P=0.025 vs random) in the test population. These findings show that two genetic variants can be combined into a predictive test that achieves similar accuracy and superior replicability compared with single SNP predictors.


Subject(s)
Adrenal Cortex Hormones/administration & dosage , Asthma/drug therapy , Asthma/genetics , Receptors, Glucocorticoid/genetics , Adult , Asthma/pathology , Female , Forced Expiratory Volume/drug effects , Genetic Association Studies , Humans , Male , Middle Aged , Polymorphism, Single Nucleotide , Respiratory Therapy
14.
Pharmacogenomics J ; 13(2): 130-6, 2013 Apr.
Article in English | MEDLINE | ID: mdl-22212731

ABSTRACT

A pro-asthmatic culture milieu and ß2-agonist (isoproterenol) were previously shown to regulate the expression of select transcription factors (TFs) within human airway epithelial and smooth muscle cells. This study tests 1116 single-nucleotide polymorphisms (SNPs) across 98 of these TF genes for association with bronchodilator response (BDR) in asthma patients. Genotyping was conducted using the Illumina HumanHap550v3 Beadchip in 403 non-Hispanic White asthmatic children and their parents. SNPs were evaluated for association with BDR using family and population-based analyses. Forty-two SNPs providing P-values <0.1 in both analyses were then genotyped in three adult asthma trials. One SNP 5' of the thyroid hormone receptor-ß gene was associated with BDR in the childhood population and two adult populations (P-value=0.0012). This investigation identified a novel locus for inter-individual variability in BDR and represents a translation of a cellular drug-response study to potential personalization of clinical asthma management.


Subject(s)
Asthma/genetics , Epithelial Cells/metabolism , Myocytes, Smooth Muscle/metabolism , Thyroid Hormone Receptors beta/genetics , Adolescent , Adult , Aged , Aged, 80 and over , Asthma/drug therapy , Asthma/pathology , Biomarkers, Pharmacological/metabolism , Bronchodilator Agents/administration & dosage , Bronchodilator Agents/adverse effects , Child , Child, Preschool , Epithelial Cells/pathology , Female , Gene Expression Regulation/drug effects , Genetic Association Studies , Haplotypes , Humans , Male , Middle Aged , Myocytes, Smooth Muscle/pathology , Polymorphism, Single Nucleotide , Transcription Factors/genetics , Transcription Factors/metabolism
15.
Pharmacogenomics J ; 13(3): 242-50, 2013 Jun.
Article in English | MEDLINE | ID: mdl-22370858

ABSTRACT

The interpatient variability in response to asthma controllers is significant and associates with pharmacogenomic variability. The goal of the present study was to identify novel variants that associate with response to common asthma controllers: fluticasone, combination of fluticasone + salmeterol and montelukast with single nucleotide polymorphisms (SNPs) in ß2-adrenergic receptor, corticosteroid and leukotriene pathway candidate genes. Participants in a large clinical trial of step-down strategies volunteered for this pharmacogenetic study. A total of 169 SNPs in 26 candidate genes were genotyped in 189 Caucasian participants with asthma who took either fluticasone (100 µg bid), fluticasone propionate (100 µg) + salmeterol (50 µg) (FP/Salm) or montelukast (5 or 10 mg) each night for 16 weeks. Primary outcomes were the slopes of plots of Asthma Control Questionnaire (ACQ) scores versus time following randomization; and the percent change in percent predicted FEV1 (ΔFEV1%pred) from enrollment to the end of the study. Associations between SNPs and outcomes were analyzed using general linear models. False discovery rate and Bonferroni corrections were used to correct for multiple comparisons. In all, 16 SNPs in seven genes were significantly associated with outcomes. For FP/Salm, three SNPs in CHRM2 associated with ACQ slope (P=2.8 × 10⁻5), and rs1461496 in HSPA8 associated with ΔFEV1%pred. For fluticasone, five SNPs in CRHR1 (P=1.9 × 10⁻4), and three SNPs in COL2A1 associated with ACQ slope and ΔFEV1%pred, respectively. For montelukast, four SNPs in CHRM2 associated with ΔFEV1%pred and predicted an opposite effect compared with fluticasone (P=9 × 10⁻³). The present study indentified several novel SNPs that associate with response to common asthma controllers, and support further pharmacogenomic study and the use of genetic variants to personalize asthma treatment.


Subject(s)
Asthma/drug therapy , Asthma/genetics , Genetic Association Studies , Receptors, Adrenergic, beta-2/genetics , Acetates/administration & dosage , Administration, Inhalation , Adolescent , Albuterol/administration & dosage , Albuterol/analogs & derivatives , Androstadienes/administration & dosage , Anti-Asthmatic Agents/administration & dosage , Asthma/pathology , Clinical Trials as Topic , Cyclopropanes , Drug Combinations , Female , Fluticasone , Forced Expiratory Volume , Humans , Male , Middle Aged , Polymorphism, Single Nucleotide , Precision Medicine , Quinolines/administration & dosage , Salmeterol Xinafoate , Sulfides
16.
Clin Exp Allergy ; 42(12): 1724-33, 2012 Dec.
Article in English | MEDLINE | ID: mdl-23181788

ABSTRACT

BACKGROUND: Asthma is a common chronic respiratory disease in children and adults. An important genetic component to asthma susceptibility has long been recognized, most recently through the identification of several genes (e.g., ORMDL3, PDE4D, HLA-DQ, and TLE4) via genome-wide association studies. OBJECTIVE: To identify genetic variants associated with asthma affection status using genome-wide association data. METHODS: We describe results from a genome-wide association study on asthma performed in 3855 subjects using a panel of 455 089 single nucleotide polymorphisms (SNPs). RESULT: The genome-wide association study resulted in the prioritization of 33 variants for immediate follow-up in a multi-staged replication effort. Of these, a common polymorphism (rs9272346) localizing to within 1 Kb of HLA-DQA1 (chromosome 6p21.3) was associated with asthma in adults (P-value = 2.2E-08) with consistent evidence in the more heterogeneous group of adults and children (P-value = 1.0E-04). Moreover, some genes identified in prior asthma GWAS were nominally associated with asthma in our populations. CONCLUSION: Overall, our findings further replicate the HLA-DQ region in the pathogenesis of asthma. HLA-DQA1 is the fourth member of the HLA family found to be associated with asthma, in addition to the previously identified HLA-DRA, HLA-DQB1 and HLA-DQA2.


Subject(s)
Asthma/genetics , Genetic Predisposition to Disease , HLA-DQ Antigens/genetics , HLA-DQ alpha-Chains/genetics , Polymorphism, Single Nucleotide , Adolescent , Adult , Aged , Asthma/epidemiology , Asthma/physiopathology , Child , Child, Preschool , Clinical Trials as Topic , Female , Genome-Wide Association Study , Humans , Male , Middle Aged , Young Adult
17.
Rev Port Pneumol ; 17(3): 124-30, 2011.
Article in Portuguese | MEDLINE | ID: mdl-21549671

ABSTRACT

Deep lymphatic drainage plays an important role in the lung, as it removes foreign materials laying on the airways surface, such as pathogenic microorganisms. This drainage is also associated with lung tumour dissemination route. Liposomes with a specially tailored membrane were used as foreign particles to be removed by the lung lymphatics. We aim to obtain images of deep lung lymphatics in baboons using liposomes encapsulating (99m)Tc-HMPAO, as aerosols. Axillary lymph nodes were visualized 30 min post-inhalation, becoming more evident 1 hour after, when abdominal aortic and inguinal lymph nodes were also observed. Late images added no additional information. ROI's and their time-activity curves were drawn to obtain biokinetic information. In conclusion, we can say that the proposed technique enables visualization of the deep lymphatic lung network and lymph nodes. This methodology may be an important tool for targeted lung delivery of cytotoxic drugs.


Subject(s)
Lung/diagnostic imaging , Lymphoscintigraphy , Radiopharmaceuticals/administration & dosage , Technetium Tc 99m Exametazime/administration & dosage , Animals , Liposomes , Papio ursinus
18.
J Clin Pharmacol ; 51(5): 751-60, 2011 May.
Article in English | MEDLINE | ID: mdl-20974993

ABSTRACT

Previously the authors found that a common polymorphism, rs12422149 (SLCO2B1{NM_007256.2}:c.935G>A), in the gene coding for OATP2B1, was associated with absorption of and response to montelukast in humans. In vitro studies showed that citrus juice could reduce the permeability of montelukast consistent with known inhibition of organic anion-transporting polypeptides. To study the clinical significance of c.935G>A, the authors conducted a single-dose, pharmacokinetic study of montelukast co-ingested with citrus juice. On average, co-ingestion with either orange juice or 4× concentrated grapefruit juice had a minimal effect on the area under the plasma concentration-time curve from time zero extrapolated to infinite time (AUC(0→∞)) of montelukast relative to co-ingestion with Gatorade control (n = 24). However when the data were stratified by genotype at c.935 (G/G n = 21, A/G n = 5), a significant reduction in AUC(0→∞) was detected with orange juice in G/G homozygotes (AUC(0→∞), G/G, Gatorade = 2560 ± 900 ng·h·mL(-1) vs AUC(0→∞), G/G, orange juice = 2010 ± 650 ng·h·mL(-1), P = .032). Significantly, A/G heterozygotes showed reduced AUC(0→∞) relative to G/G homozygotes, independent of treatment (AUC(0→∞), G/G, combined treatments = 2310 ± 820 ng·h·mL(-1) vs AUC(0→∞), A/G, combined treatments = 1460 ± 340 ng·h·mL(-1), P = 2.0 × 10(-5)) replicating previous observations.


Subject(s)
Acetates/pharmacokinetics , Anti-Asthmatic Agents/pharmacokinetics , Asthma/drug therapy , Beverages , Citrus paradisi , Citrus sinensis , Food-Drug Interactions , Leukotriene Antagonists/pharmacokinetics , Organic Anion Transporters/metabolism , Quinolines/pharmacokinetics , Acetates/administration & dosage , Acetates/blood , Adolescent , Anti-Asthmatic Agents/administration & dosage , Anti-Asthmatic Agents/blood , Area Under Curve , Asthma/metabolism , Asthma/physiopathology , Cross-Over Studies , Cyclopropanes , Female , Florida , Fruit , Heterozygote , Homozygote , Humans , Isotonic Solutions , Leukotriene Antagonists/administration & dosage , Leukotriene Antagonists/blood , Male , Models, Biological , Organic Anion Transporters/genetics , Phenotype , Polymorphism, Genetic , Quinolines/administration & dosage , Quinolines/blood , Sulfides
20.
Clin Exp Allergy ; 38(7): 1117-23, 2008 Jul.
Article in English | MEDLINE | ID: mdl-18294255

ABSTRACT

BACKGROUND: Atrial natriuretic peptide (ANP) plays an important role in the lung and in augmenting allergic inflammation in asthma. The gene encoding ANP, NPPA, is located on chromosome 1p36, a region that has been linked to asthma. OBJECTIVES: Determine associations between asthma and four common SNPs on the NPPA gene: C/G (rs13305986) in the promoter; G/A (rs5063) in Exon 1 resulting in NPPAMet32-->Val substitution; T/C (rs5065) in Exon 3 resulting in an Arg152-->Ter substitution; and T/C in the 3'UT region (rs5067). Methods A case-control design was used in White participants. The screening cohort consisted of 336 asthmatic cases who participated in a large clinical trial and 154, non-asthmatic controls. The replicate cohort consisted of 172 asthmatic cases from a second clinical trial and 115 healthy controls. Demographic characteristics were well matched for cases and controls in the screening cohort. Adjusted (age, gender, body mass index) odds ratio (OR) were calculated by chi(2) and logistic regression; a P-value of 0.0167 defined the threshold of significance. RESULTS: The C allele of rs5067 was associated with asthma in the screening and replicate cohorts: adjusted ORs (95% confidence intervals) 0.5 (0.29-0.84; P=0.009) and 0.24 (0.11-0.53; P<0.0001), respectively. The C allele of rs5065 was associated with asthma in the screening cohort but not in the replicate. The population-attributable risk for asthma in carriers of the C allele for rs5067 was 23.3%. CONCLUSIONS: For rs5067, the risks of asthma in carriers of the C allele in the screening and replicate cohorts were reduced by 50% and 76%, respectively. NPPA may be an important susceptibility gene for asthma.


Subject(s)
Asthma/genetics , Atrial Natriuretic Factor/genetics , Genetic Predisposition to Disease , Polymorphism, Single Nucleotide , Adult , Alleles , Case-Control Studies , Cohort Studies , Female , Gene Frequency , Genotype , Haplotypes , Humans , Male
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