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1.
Sci Rep ; 12(1): 22403, 2022 12 27.
Article in English | MEDLINE | ID: mdl-36575301

ABSTRACT

Evolutionary dynamics is well captured by the replicator equations when the population is infinite and well-mixed. However, the extinction dynamics is modified with finite and structured populations. Experiments on the non-transitive ecosystem containing three populations of bacteria found that the ecological stability sensitively depends on the spatial structure of the populations. Based on the Reference-Gamble-Birth algorithm, we use agent-based Monte Carlo simulations to investigate the extinction dynamics in the rock-paper-scissors ecosystem with finite and structured populations. On the fully-connected network, the extinction time in stable and unstable regimes falls into two universal functions when plotted with the rescaled variables. On the two dimensional grid, the spatial structure changes the transition boundary between stable and unstable regimes but doesn't change its extinction trend. The finding of universal scaling in extinction dynamics is unexpected, and may provide a powerful method to classify different evolutionary dynamics into universal classes.


Subject(s)
Ecosystem , Models, Biological , Population Dynamics , Stochastic Processes , Biological Evolution , Extinction, Biological
2.
Sci Rep ; 12(1): 17629, 2022 10 21.
Article in English | MEDLINE | ID: mdl-36271115

ABSTRACT

Neurons convert external stimuli into action potentials, or spikes, and encode the contained information into the biological nervous system. Despite the complexity of neurons and the synaptic interactions in between, rate models are often adapted to describe neural encoding with modest success. However, it is not clear whether the firing rate, the reciprocal of the time interval between spikes, is sufficient to capture the essential features for the neuronal dynamics. Going beyond the usual relaxation dynamics in Ginzburg-Landau theory for statistical systems, we propose that neural activities can be captured by the U(1) dynamics, integrating the action potential and the "phase" of the neuron together. The gain function of the Hodgkin-Huxley neuron and the corresponding dynamical phase transitions can be described within the U(1) neuron framework. In addition, the phase dependence of the synaptic interactions is illustrated and the mapping to the Kinouchi-Copelli neuron is established. It suggests that the U(1) neuron is the minimal model for single-neuron activities and serves as the building block of the neuronal network for information processing.


Subject(s)
Models, Neurological , Neurons , Neurons/physiology , Action Potentials/physiology , Adaptation, Physiological , Computer Simulation
3.
Data Brief ; 32: 106233, 2020 Oct.
Article in English | MEDLINE | ID: mdl-32984455

ABSTRACT

This study demonstrates a mathematical description of a point-like nanocontact model, which is developed to simulate electron transport through a nanoconstriction between magnetic or non-magnetic contact sides. The theory represents a solution to the quasi-(semi)-classical transport equations for charge current, which takes into account second-order derivatives of the related quasi-classical Green functions along the transport direction. The theoretical approach also enables the creation of an I-V model for a heterojunction with embedded objects, where the initial condition, a conduction band minimum profile of the system, is well-defined. The presented spin-resolved current approach covers a complete range of the scales including quantum, ballistic, quasi-ballistic (intermediate), and diffusive classical transport conditions, with a smooth transition between them without residual terms or any empirical variables. The main benefit of the mathematical solution is its novel methodology, which is an alternative candidate to the well-known Boltzmann technique.

4.
Sci Rep ; 10(1): 7439, 2020 May 04.
Article in English | MEDLINE | ID: mdl-32366876

ABSTRACT

It has been a long-standing puzzle why electrons with repulsive interactions can form pairs in unconventional superconductors. Here we develop an analytic solution for renormalization group analysis in multiband superconductors, which agrees with the numerical results exceedingly well. The analytic solution allows us to construct soluble effective theory and answers the pairing puzzle: electrons form pairs resonating between different bands to compensate the energy penalty for bring them together, just like the resonating chemical bonds in benzene. The analytic solutions allow us to explain the peculiar features of critical temperatures, spin uctuations in unconventional superconductors and can be generalized to cuprates where the notion of multibands is replaced by multipatches in momentum space.

5.
Sci Rep ; 9(1): 5547, 2019 Apr 03.
Article in English | MEDLINE | ID: mdl-30944373

ABSTRACT

The role of electron-phonon interactions in iron-based superconductor is currently under debate with conflicting experimental reports on the isotope effect. To address this important issue, we employ the renormalization-group method to investigate the competition between electron-electron and electron-phonon interactions in these materials. The renormalization-group analysis shows that the ground state is a phonon-dressed unconventional superconductor: the dominant electronic interactions account for pairing mechanism while electron-phonon interactions are subdominant. Because of the phonon dressing, the isotope effect of the critical temperature can be normal or reversed, depending on whether the retarded intra- or inter-band interactions are altered upon isotope substitutions. The connection between the anomalous isotope effect and the unconventional pairing symmetry is discussed at the end.

6.
Nat Mater ; 18(4): 335-341, 2019 04.
Article in English | MEDLINE | ID: mdl-30778228

ABSTRACT

Exchange bias, a shift in the hysteresis loop of a ferromagnet arising from interfacial exchange coupling between adjacent ferromagnetic and antiferromagnetic layers, is an integral part of spintronic devices. Here, we show that spin-orbit torque generated from spin current, a promising approach to switch the ferromagnetic magnetization of next-generation magnetic random access memory, can also be used to manipulate the exchange bias. Applying current pulses to a Pt/Co/IrMn trilayer causes concurrent switching of ferromagnetic magnetization and exchange bias, but with different underlying mechanisms. This implies that the ferromagnetic magnetization and exchange bias can be manipulated independently. Our work demonstrates that spin-orbit torque in ferromagnet/antiferromagnet heterostructures facilitates independent manipulations of distinct magnetic properties, motivating innovative designs for future spintronics devices.

7.
Sci Rep ; 8(1): 16366, 2018 Oct 31.
Article in English | MEDLINE | ID: mdl-30377298

ABSTRACT

A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has not been fixed in the paper.

8.
Sci Rep ; 7(1): 8357, 2017 08 21.
Article in English | MEDLINE | ID: mdl-28827591

ABSTRACT

The problem of the ballistic electron tunneling is considered in magnetic tunnel junction with embedded non-magnetic nanoparticles (NP-MTJ), which creates additional conducting middle layer. The strong temperature impact was found in the system with averaged NP diameter d av < 1.8 nm. Temperature simulation is consistent with experimental observations showing the transition between dip and classical dome-like tunneling magnetoresistance (TMR) voltage behaviors. The low temperature approach also predicts step-like TMR and quantized in-plane spin transfer torque (STT) effects. The robust asymmetric STT respond is found due to voltage sign inversion in NP-MTJs with barrier asymmetry. Furthermore, it is shown how size distribution of NPs as well as quantization rules modify the spin-current filtering properties of the nanoparticles in ballistic regime. Different quantization rules for the transverse component of the wave vector are considered to overpass the dimensional threshold (d av ≈ 1.8 nm) between quantum well and bulk-assisted states of the middle layer.

9.
Sci Rep ; 7: 43678, 2017 03 07.
Article in English | MEDLINE | ID: mdl-28266559

ABSTRACT

Edge magnetism in graphene sparks intense theoretical and experimental interests. In the previous study, we demonstrated the existence of collective excitations at the zigzag edge of the honeycomb lattice with long-ranged Néel order. By employing the Schwinger-boson approach, we show that the edge magnons remain robust even when the long-ranged order is destroyed by spin fluctuations. Furthermore, in the effective field-theory limit, the dynamics of the edge magnon is captured by the one-dimensional relativistic Klein-Gordon equation. It is intriguing that the boundary field theory for the edge magnon is tied up with its bulk counterpart. By performing density-matrix renormalization group calculations, we show that the robustness may be attributed to the closeness between the ground state and the Néel state. The existence of edge magnon is not limited to the honeycomb structure, as demonstrated in the rotated-square lattice with zigzag edges as well. The universal behavior indicates that the edge magnons may attribute to the uncompensated edges and can be detected in many two-dimensional materials.


Subject(s)
Models, Theoretical , Algorithms
10.
Adv Mater ; 29(8)2017 Feb.
Article in English | MEDLINE | ID: mdl-28097688

ABSTRACT

By engineering multidomain formation in Co/Pt multilayers, it is demonstrated how multilevel storage can be achieved by spin-orbit torque switching. It is rather remarkable that, by modulating the writing pulse conditions, the final magnetization states can be controlled, independent of the initial configurations. The initialization-free multilevel memory advances the spin-orbit-torque magnetic random access memory to higher storage density for practical applications.

11.
Sci Rep ; 5: 11904, 2015 Jul 09.
Article in English | MEDLINE | ID: mdl-26156786

ABSTRACT

Magnetic patterning, with designed spatial profile of the desired magnetic properties, has been a rising challenge for developing magnetic devices at nanoscale. Most existing methods rely on locally modifying magnetic anisotropy energy or saturation magnetization, and thus post stringent constraints on the adaptability in diverse applications. We propose an alternative route for magnetic patterning: by manipulating the local intergranular exchange coupling to tune lateral magnetic properties. As demonstration, the grain boundary structure of Co/Pt multilayers is engineered by thermal treatment, where the stress state of the multilayers and thus the intergranular exchange coupling can be modified. With Ag passivation layers on top of the Co/Pt multilayers, we can hinder the stress relaxation and grain boundary modification. Combining the pre-patterned Ag passivation layer with thermal treatment, we can design spatial variations of the magnetic properties by tuning the intergranular exchange coupling, which diversifies the magnetic patterning process and extends its feasibility for varieties of new devices.

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