Absolute photodissociation cross sections of thermalized methyl vinyl ketone oxide and methacrolein oxide.

Methyl vinyl ketone oxide (MVKO) and methacrolein oxide (MACRO) are resonance-stabilized Criegee intermediates which are formed in the ozonolysis reaction of isoprene, the most abundant unsaturated hydrocarbon in the atmosphere. The absolute photodissociation cross sections of MVKO and MACRO were determined by measuring their laser depletion fraction at 352 nm, which was deduced from their time-resolved UV-visible absorption spectra. After calibrating the 352 nm laser fluence with the photodissociation of NO2, for which the absorption cross section and photodissociation quantum yield are well known, the photodissociation cross sections of thermalized (299 K) MVKO and MACRO at 352 nm were determined to be (3.02 ± 0.60) × 10-17 cm2 and (1.53 ± 0.29) × 10-17 cm2, respectively. Using their reported spectra and photodissociation quantum yields, their peak absorption cross sections were deduced to be (3.70 ± 0.74) × 10-17 cm2 (at 371 nm, MVKO) and (3.04 ± 0.58) × 10-17 cm2 (at 397 nm, MACRO). These values agree fairly with our theoretical predictions and are substantially larger than those of smaller, alkyl-substituted Criegee intermediates (CH2OO, syn-CH3CHOO, (CH3)2COO), revealing the effect of extended conjugation. With their cross sections, we also quantified the synthesis yields of MVKO and MACRO in the present experiment to be 0.22 ± 0.10 (at 299 K and 30-700 torr) and 0.043 ± 0.019 (at 299 K and 500 torr), respectively, relative to their photolyzed precursors. The lower yield of MACRO can be related to the high endothermicity of its formation channel.

Surprisingly long lifetime of methacrolein oxide, an isoprene derived Criegee intermediate, under humid conditions.

Ozonolysis of isoprene, the most abundant alkene, produces three distinct Criegee intermediates (CIs): CH2OO, methyl vinyl ketone oxide (MVKO) and methacrolein oxide (MACRO). The oxidation of SO2 by CIs is a potential source of H2SO4, an important precursor of aerosols. Here we investigated the UV-visible spectroscopy and reaction kinetics of thermalized MACRO. An extremely fast reaction of anti-MACRO with SO2 has been found, kSO2 = (1.5 ± 0.4) × 10-10 cm3 s-1 (±1σ, σ is the standard deviation of the data) at 298 K (150 - 500 Torr), which is ca. 4 times the value for syn-MVKO. However, the reaction of anti-MACRO with water vapor has been observed to be quite slow with an effective rate coefficient of (9 ± 5) × 10-17 cm3 s-1 (±1σ) at 298 K (300 to 500 Torr), which is smaller than current literature values by 1 or 2 orders of magnitude. Our results indicate that anti-MACRO has an atmospheric lifetime (best estimate ca. 18 ms at 298 K and RH = 70%) much longer than previously thought (ca. 0.3 or 3 ms), resulting in a much higher steady-state concentration. Owing to larger reaction rate coefficient, the impact of anti-MACRO on the oxidation of atmospheric SO2 would be substantial, even more than that of syn-MVKO.

Kinetics of Unimolecular Decay of Methyl Vinyl Ketone Oxide, an Isoprene-Derived Criegee Intermediate, under Atmospherically Relevant Conditions.

Isoprene is the most abundant unsaturated hydrocarbon in the atmosphere. Ozonolysis of isoprene produces methyl vinyl ketone oxide (MVKO), which may react with atmospheric SO2, formic acid, and other important species at substantial levels. In this study, we utilized ultraviolet absorption to monitor the unimolecular decay kinetics of syn-MVKO in real time at 278-319 K and 100-503 Torr. After removing the contributions of radical reactions and wall loss, the unimolecular decay rate coefficient of syn-MVKO was measured to be kuni = 70 ± 15 s-1 (1σ uncertainty) at 298 K with negligible pressure dependence. In addition, kuni increases from ca. 30 s-1 at 278 K to ca. 175 s-1 at 319 K with an effective Arrhenius activation energy of 8.3 ± 2.5 kcal mol-1, kuni(T) = (9.3 × 107)exp(-4200/T) s-1. Our results indicate that unimolecular decay is the major sink of MVKO in the troposphere. The data would improve the estimation for the steady-state concentrations of MVKO and thus its oxidizing ability.

The role of the iodine-atom adduct in the synthesis and kinetics of methyl vinyl ketone oxide-a resonance-stabilized Criegee intermediate.

Isoprene is the most abundant alkene in the atmosphere. Ozonolysis of isoprene produces three very reactive carbonyl oxides (Criegee intermediates), including formaldehyde oxide, methyl vinyl ketone oxide (MVKO, CH3(C2H3)COO), and methacrolein oxide. The latter two Criegee intermediates are resonance-stabilized due to the vinyl group. Recently, the electronic spectrum of thermalized MVKO has been reported [Caravan, et al., Proc. Natl. Acad. Sci. U. S. A., 2020, 117, 9733]. In this work, we utilized this strong UV/visible absorption to investigate the reaction kinetics of MVKO with SO2 under a wide pressure range of 4 to 700 Torr. We followed a new method [Barber, et al., J. Am. Chem. Soc., 2018, 140, 10866], in which MVKO is produced through the reaction of a resonance-stabilized iodoalkene radical with O2. The experimental data are consistent with a kinetic model that the reaction goes through an adduct of CH3(C2H3)CIOO, similar to the cases of H/alkyl substituted Criegee intermediates. However, different from the H/alkyl adducts, which are stable over the time scales of typical kinetic experiments, this vinyl adduct CH3(C2H3)CIOO is less stable and decomposes to MVKO + I at a time scale of 10-3 s (faster at higher temperature), consistent with the results of quantum chemistry calculations and the fact that the resonance stabilization is disrupted at the adduct structure. The adduct decomposition is the major pathway that forms MVKO for pressures higher than 50 Torr. In addition, temperature dependence has been investigated for 278-319 K. The experimental activation energy of the adduct decomposition was measured to be 12.7 ± 0.3 kcal mol-1, consistent with the calculated dissociation energy of the adduct to MVKO + I (14 kcal mol-1). Furthermore, the temperature dependent rate coefficient of MVKO + SO2 reaction has been measured to be kSO2 = (4.0 ± 0.6) × 10-11 cm3 s-1 at 4-700 Torr and 298 K with a negative activation energy of -3.7 ± 0.4 kcal mol-1.

Direct kinetic measurements and theoretical predictions of an isoprene-derived Criegee intermediate.

Isoprene has the highest emission into Earth's atmosphere of any nonmethane hydrocarbon. Atmospheric processing of alkenes, including isoprene, via ozonolysis leads to the formation of zwitterionic reactive intermediates, known as Criegee intermediates (CIs). Direct studies have revealed that reactions involving simple CIs can significantly impact the tropospheric oxidizing capacity, enhance particulate formation, and degrade local air quality. Methyl vinyl ketone oxide (MVK-oxide) is a four-carbon, asymmetric, resonance-stabilized CI, produced with 21 to 23% yield from isoprene ozonolysis, yet its reactivity has not been directly studied. We present direct kinetic measurements of MVK-oxide reactions with key atmospheric species using absorption spectroscopy. Direct UV-Vis absorption spectra from two independent flow cell experiments overlap with the molecular beam UV-Vis-depletion spectra reported recently [M. F. Vansco, B. Marchetti, M. I. Lester, J. Chem. Phys. 149, 44309 (2018)] but suggest different conformer distributions under jet-cooled and thermal conditions. Comparison of the experimental lifetime herein with theory indicates only the syn-conformers are observed; anti-conformers are calculated to be removed much more rapidly via unimolecular decay. We observe experimentally and predict theoretically fast reaction of syn-MVK-oxide with SO2 and formic acid, similar to smaller alkyl-substituted CIs, and by contrast, slow removal in the presence of water. We determine products through complementary multiplexed photoionization mass spectrometry, observing SO3 and identifying organic hydroperoxide formation from reaction with SO2 and formic acid, respectively. The tropospheric implications of these reactions are evaluated using a global chemistry and transport model.

Temperature and isotope effects in the reaction of CH3CHOO with methanol.

Carbonyl oxides, also known as Criegee intermediates, are generated from ozonolysis of unsaturated hydrocarbons in the atmosphere. Alcohols are often used as a scavenger of the Criegee intermediates in laboratory studies. In this work, the reaction kinetics of CH3CHOO with methanol vapor was investigated at various temperatures, pressures, and isotopic substitutions using time-resolved UV absorption spectroscopy. The observed rate coefficients of the reaction of anti-CH3CHOO with methanol show a linear dependence on [CH3OH]. The bimolecular rate coefficient was determined to be k1Ha = (4.8 ± 0.5) × 10-12 cm3 s-1 at 298 K and 250 Torr with a negative activation energy Ea = -2.8 ± 0.3 kcal mol-1 for T = 288-315 K [k(T) = A exp(-Ea/RT)]. For the reaction of syn-CH3CHOO with methanol vapor, the observed rate coefficients show a quadratic dependence on [CH3OH], indicating that two methanol molecules participate in the reaction. The termolecular rate coefficient was determined to be k2Hs = (8.0 ± 1.0) × 10-32 cm6 s-1 at 298 K and 250 Torr with a strong negative temperature dependence (Ea = -13.2 ± 0.3 kcal mol-1) at 273-323 K. No significant pressure effect was observed at 250-760 Torr. A kinetic isotope effect, k2Hs/k2Ds = 2.5, was observed by changing CH3OH to CH3OD. Quantum chemistry and transition state theory calculations suggest that the observed isotope effect is mainly attributed to the changes of the vibrational zero-point energies and partition functions while tunneling plays a very minor role. The reaction of syn-CH3CHOO with one CH3OH molecule was not observed in the studied concentration range.

Temperature-Dependent Rate Coefficient for the Reaction of CH3SH with the Simplest Criegee Intermediate.

The kinetics of the reaction of the simplest Criegee intermediate CH2OO with CH3SH was measured with transient IR absorption spectroscopy in a temperature-controlled flow reaction cell, and the bimolecular rate coefficients were measured from 278 to 349 K and at total pressure from 10 to 300 Torr. The measured bimolecular rate coefficient at 298 K and 300 Torr is (1.01 ± 0.17) × 10-12 cm3 s-1. The results exhibit a weak negative temperature dependence: the activation energy Ea ( k = Ae- Ea/ RT) is -1.83 ± 0.05 kcal mol-1, measured at 30 and 100 Torr. Quantum chemistry calculations of the reaction rate coefficient at the QCISD(T)/CBS//B3LYP/6-311+G(2d,2p) level (1.6 × 10-12 cm3 s-1 at 298 K; Ea = - 2.80 kcal mol-1) are in reasonable agreement with the experimental results. The experimental and theoretical results of the reaction of CH2OO with CH3SH are compared to the reactions of CH2OO with methanol and hydrogen sulfide, and the trends in reactivity are discussed. The results of the present work indicate that this reaction has a negligible influence to atmospheric CH2OO or CH3SH.

Criegee Intermediate Reaction with Alcohol Is Enhanced by a Single Water Molecule.

The role of water in gas-phase reactions has gained considerable interest. Here we report a direct kinetic measurement of the reaction of syn-CH3CHOO (a Criegee intermediate or carbonyl oxide) with methanol at various relative humidity (RH = 0-80%) under near-ambient conditions (298 K, 250-755 Torr). The data indicate that a single water molecule expedites the reaction by up to a factor of three. The rate coefficient of the corresponding reaction, syn-CH3CHOO + CH3OH + H2O → products, has been determined to be (1.95 ± 0.11) × 10-32 cm6 s-1 at 298 K, with no observable pressure dependence for 250-755 Torr. Quantum chemistry calculation shows that the dominating pathway involves a hydrogen-bonded ring structure, in which methanol is donating a hydrogen atom to water, water is donating a hydrogen atom to the terminal oxygen atom of the Criegee intermediate, and, on the product side, H2O is reformed and acts as a catalyst.

Reactivity of Criegee Intermediates toward Carbon Dioxide.

Recent theoretical work by Kumar and Francisco suggested that the high reactivity of Criegee intermediates (CIs) could be utilized for designing efficient carbon capture technologies. Because the anti-CH3CHOO + CO2 reaction has the lowest barrier in their study, we chose to investigate it experimentally. We probed anti-CH3CHOO with its strong UV absorption at 365 nm and measured the rate coefficient to be ≤2 × 10-17 cm3 molecule-1 s-1 at 298 K, which is consistent with our theoretical value of 2.1 × 10-17 cm3 molecule-1 s-1 at the QCISD(T)/CBS//B3LYP/6-311+G(2d,2p) level but inconsistent with their results obtained at the M06-2X/aug-cc-pVTZ level, which tends to underestimate the barrier heights. The experimental result indicates that the reaction of a Criegee intermediate with atmospheric CO2 (400 ppmv) would be inefficient (keff < 0.2 s-1) and cannot compete with other decay processes of Criegee intermediates like reactions with water vapor (∼103 s-1) or thermal decomposition (∼102 s-1).

A room-temperature adenosine-based molecular beacon for highly sensitive detection of nucleic acids.

This study developed a simple, sensitive, and selective molecular beacon for detecting nucleic acids at room temperature based on coralyne induced conformational change of a MB through A(2)-coralyne-A(2) coordination.

Fluorescence detection of coralyne and polyadenylation reaction using an oligonucleotide-based fluorogenic probe.

This study describes the development of a simple, sensitive, and selective-detection system for coralyne and polyadenylation reaction based on the fact that coralyne induces a conformational change of the polyadenosine [poly(A)] oligonucleotide through A-coralyne-A coordination, thereby enhancing the fluorescence of SYBR Green I.

A sample preparation method for gold nanoparticle-assisted laser desorption/ionization time-of-flight mass spectrometry.

A sample preparation method to detect small molecules in laser desorption/ionization time-of-flight mass spectrometry (LDI-TOF MS) was developed using bare gold nanoparticles (AuNPs) as matrices. In this sample preparation method, the analyte is deposited first and then followed by the bare AuNPs. Neutral steroids and carbohydrates, which are difficult to ionize, using organic matrices, are cationized efficiently by combining AuNP-assisted LDI-TOF MS with this sample preparation method. As compared to the dried-droplet method (i.e., analyte and bare AuNPs are mixed and dried together), this method offers distinct advantages for improving shot-to-shot reproducibility, increasing the ionization efficiency of the analyte, and reducing sample preparation time.

Ultrasensitive sensing of Hg(2+) and CH(3)Hg(+) based on the fluorescence quenching of lysozyme type VI-stabilized gold nanoclusters.

This study presents a one-step approach to prepare lysozyme type VI-stabilized gold nanoclusters (Lys VI-AuNCs) for the ultrasensitive detection of Hg(2+) and CH(3)Hg(+) based on fluorescence quenching. The optical properties and size of Lys VI-AuNCs are highly dependent on the concentration of Lys VI, which acts as both a reducing and a stabilizing agent. With an increase in the concentration of Lys VI, we observed a systematic blue shift in the fluorescence maxima, an increase in the quantum yields, and a reduction in the particle size. When using 25 mg/mL Lys VI as a reducing agent, the formed Lys VI-AuNCs (denoted as Au-631) were found to be highly stable in a high-concentration glutathione or NaCl. Additionally, the Au-631 were capable of sensing Hg(2+) and CH(3)Hg(+) through the interaction between Hg(2+)/CH(3)Hg(+) and Au(+) on the Au surface; the limits of detection (LODs) for Hg(2+) and CH(3)Hg(+) were 3 pM and 4 nM, respectively. The selectivity of this probe is more than 500-fold for Hg(2+) over any metal ions. As compared to bovine serum albumin-stabilized AuNCs, Au-631 provided an approximately 330-fold improvement in the detection of Hg(2+). To the best of our knowledge, Au-631 not only provide the first example for detecting CH(3)Hg(+) but also have the lowest LOD value for Hg(2+) when compared to other AuNC-based Hg(2+) sensors. Importantly, this probe was successfully applied to the determination of Hg(2+) and CH(3)Hg(+) in seawater.

Colorimetric sensing of silver(I) and mercury(II) ions based on an assembly of Tween 20-stabilized gold nanoparticles.

We have developed a rapid and homogeneous method for the highly selective detection of Hg(2+) and Ag(+) using Tween 20-modified gold nanoparticles (AuNPs). Citrate ions were found to still be adsorbed on the Au surface when citrate-capped AuNPs were modified with Tween 20, which stabilizes the citrate-capped AuNPs against conditions of high ionic strength. When citrate ions had reduced Hg(2+) and Ag(+) to form Hg-Au alloys and Ag on the surface of the AuNPs, Tween 20 was removed from the NP surface. As a result, the AuNPs were unstable under a high-ionic-strength solution, resulting in NP aggregation. The formation of Hg-Au alloys or Ag on the surface of the AuNPs was demonstrated by means of inductively coupled plasma mass spectroscopy and energy-dispersive X-ray spectroscopy. Tween 20-AuNPs could selectively detect Hg(2+) and Ag(+) at concentrations as low as 0.1 and 0.1 microM in the presence of NaCl and EDTA, respectively. Moreover, the probe enables the analysis of AgNPs with a minimum detectable concentration that corresponds to 1 pM. This probe was successfully applied to detect Hg(2+) in drinking water and seawater, Ag(+) in drinking water, and AgNPs in drinking water.

Highly sensitive and selective detection of silver ions and silver nanoparticles in aqueous solution using an oligonucleotide-based fluorogenic probe.

We developed a new homogeneous assay-using SYBR Green I and repeats of 20 C nucleotides-for the highly selective and sensitive detection of silver ions and silver nanoparticles.

Gold nanoparticles as assisted matrices for the detection of biomolecules in a high-salt solution through laser desorption/ionization mass spectrometry.

Citrate-capped gold nanoparticles (AuNPs) serve as matrices for the determination of biomolecules in a high-salt solution through matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS). In the case of using 2,5-dihydroxybenzoic acid (2,5-DHB) as a matrix, the signal intensities of neutral steroids were severely suppressed in a high-salt solution. A high concentration of NaCl caused the formation of the sodium adduct ions during the desorption/ionization process, resulting in a decrease of the signal intensities of the protonated ions. In comparison, by applying AuNP-assisted LDI-TOF-MS, the signal intensities of neutral steroids remained almost constant when the concentration of NaCl was increased to 500 mM. Because the use of citrate-capped AuNPs as matrices primarily offers alkali metal ion adducts, AuNP matrices have a higher tolerance to high NaCl concentrations relative to that of 2,5-DHB matrices. The relevant phenomena are also discovered in the case of analysis of neutral carbohydrate, monosialoganglioside, indolamine, and angiotensin I. The quantification of small molecules in a high-salt solution has been accomplished by AuNP-assisted LDI-TOF-MS coupled to a unique sample preparation, in which samples are deposited onto the sample plate before AuNPs. The present method has been further applied to the determination of urea, creatinine, uric acid, and glucose in a urine sample.

Using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry to rapidly screen for albuminuria.

Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) is used as an alternative method for the rapid diagnosis of albuminuria. This technique requires no further sample pretreatment than simply mixing the urine sample with a MALDI matrix and drying under ambient conditions. The resulting MALDI mass spectra reveal albumin ions having charges ranging from +1 to +5. The detection of albumin is possible using any of the three most common MALDI matrices - sinapinic acid (SA), 2,5-dihydroxybenzoic acid (2,5-DHB), or 4-hydroxy-alpha-cyanocinnamic acid (alpha-CHC). Using this analytical approach, the limit of detection for albumin in urine is 10(-6) M, approximately 5 to 10 times lower than that detectable through conventional chemical testing.

Highly efficient classification and identification of human pathogenic bacteria by MALDI-TOF MS.

Accurate and rapid identification of pathogenic microorganisms is of critical importance in disease treatment and public health. Conventional work flows are time-consuming, and procedures are multifaceted. MS can be an alternative but is limited by low efficiency for amino acid sequencing as well as low reproducibility for spectrum fingerprinting. We systematically analyzed the feasibility of applying MS for rapid and accurate bacterial identification. Directly applying bacterial colonies without further protein extraction to MALDI-TOF MS analysis revealed rich peak contents and high reproducibility. The MS spectra derived from 57 isolates comprising six human pathogenic bacterial species were analyzed using both unsupervised hierarchical clustering and supervised model construction via the Genetic Algorithm. Hierarchical clustering analysis categorized the spectra into six groups precisely corresponding to the six bacterial species. Precise classification was also maintained in an independently prepared set of bacteria even when the numbers of m/z values were reduced to six. In parallel, classification models were constructed via Genetic Algorithm analysis. A model containing 18 m/z values accurately classified independently prepared bacteria and identified those species originally not used for model construction. Moreover bacteria fewer than 10(4) cells and different species in bacterial mixtures were identified using the classification model approach. In conclusion, the application of MALDI-TOF MS in combination with a suitable model construction provides a highly accurate method for bacterial classification and identification. The approach can identify bacteria with low abundance even in mixed flora, suggesting that a rapid and accurate bacterial identification using MS techniques even before culture can be attained in the near future.